Wall clock time and date at job start Mon Mar 30 2020 18:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00160 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99812 * 3 2 1 7 7 C 1.38811 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36915 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.38834 * 120.00338 * 179.72824 * 9 7 2 11 11 C 1.39232 * 119.70654 * 359.72283 * 10 9 7 12 12 C 1.38321 * 119.08433 * 179.73325 * 11 10 9 13 13 C 1.38880 * 118.50460 * 0.53313 * 12 11 10 14 14 C 1.50699 * 120.32629 * 179.74643 * 13 12 11 15 15 O 1.42902 * 109.47558 * 269.98249 * 14 13 12 16 16 C 1.42903 * 113.99940 * 180.02562 * 15 14 13 17 17 C 1.53774 * 113.61435 * 249.13151 * 16 15 14 18 18 C 1.53956 * 87.02116 * 220.05242 * 17 16 15 19 19 C 1.53783 * 87.11161 * 25.36273 * 18 17 16 20 20 C 1.38121 * 119.34281 * 359.73038 * 13 12 11 21 21 N 1.31898 * 120.86558 * 359.97438 * 20 13 12 22 22 H 0.97004 * 119.99382 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99808 * 359.97438 * 9 7 2 24 24 H 1.07991 * 120.45745 * 0.02562 * 11 10 9 25 25 H 1.08001 * 120.74164 * 180.25672 * 12 11 10 26 26 H 1.09007 * 109.47218 * 29.98165 * 14 13 12 27 27 H 1.08996 * 109.47020 * 149.97847 * 14 13 12 28 28 H 1.09002 * 112.85087 * 20.33164 * 16 15 14 29 29 H 1.09003 * 113.61302 * 334.57489 * 17 16 15 30 30 H 1.09005 * 113.61629 * 105.47007 * 17 16 15 31 31 H 1.09007 * 113.53350 * 270.81101 * 18 17 16 32 32 H 1.09000 * 113.66358 * 139.93506 * 18 17 16 33 33 H 1.08999 * 113.61200 * 220.09217 * 19 18 17 34 34 H 1.09002 * 113.68853 * 89.19522 * 19 18 17 35 35 H 1.08002 * 119.56716 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1035 1.6963 1.2126 7 6 2.0097 -1.2022 -0.0005 8 1 3.0897 -1.2023 -0.0010 9 7 1.3251 -2.3879 -0.0005 10 6 2.0192 -3.5902 -0.0068 11 6 3.4115 -3.5832 -0.0189 12 6 4.0900 -4.7885 -0.0193 13 6 3.3516 -5.9648 -0.0190 14 6 4.0487 -7.3008 -0.0253 15 8 4.2629 -7.7201 -1.3745 16 6 4.9209 -8.9831 -1.4931 17 6 6.3514 -8.8827 -2.0482 18 6 6.0394 -10.1528 -2.8605 19 6 4.5580 -9.7485 -2.7767 20 6 1.9720 -5.8979 -0.0126 21 7 1.3510 -4.7342 -0.0063 22 1 -0.4849 0.8401 0.0004 23 1 0.3551 -2.3878 0.0002 24 1 3.9541 -2.6495 -0.0230 25 1 5.1697 -4.8143 -0.0244 26 1 5.0082 -7.2124 0.4844 27 1 3.4301 -8.0357 0.4897 28 1 4.8448 -9.5866 -0.5886 29 1 6.5194 -8.0000 -2.6653 30 1 7.1240 -9.0253 -1.2926 31 1 6.2706 -11.0765 -2.3299 32 1 6.4406 -10.1336 -3.8737 33 1 3.8849 -10.5891 -2.6084 34 1 4.2334 -9.1030 -3.5929 35 1 1.3942 -6.8103 -0.0128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:37 Heat of formation + Delta-G solvation = 9.238865 kcal Electronic energy + Delta-G solvation = -17009.395333 eV Core-core repulsion = 14200.971519 eV Total energy + Delta-G solvation = -2808.423814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35245 -38.85814 -36.09314 -35.06471 -32.18912 -31.34424 -29.39530 -25.98496 -25.67520 -24.65163 -23.72688 -22.58680 -20.67489 -19.64314 -17.88403 -16.98286 -16.77422 -15.70170 -15.57444 -14.73499 -14.59486 -14.37448 -13.82899 -13.44525 -13.17790 -13.07463 -12.48975 -12.09445 -12.02490 -11.89653 -11.67526 -11.46733 -11.31533 -10.82554 -10.68586 -10.50793 -10.46714 -10.28488 -10.18365 -9.21423 -8.90849 -8.69650 -8.31752 -6.97024 -6.66393 -3.87004 2.27996 2.45622 3.11715 3.12120 3.13932 3.95141 4.07403 4.54475 4.59008 4.72346 4.82190 4.87028 4.93241 5.24487 5.30069 5.51489 5.55485 5.60428 5.69650 5.72594 5.76493 5.81498 5.87537 5.96213 6.13711 6.25871 6.40186 6.61152 6.81048 7.08667 7.15502 7.37004 7.56891 7.58496 7.89821 8.56773 8.92891 9.27293 9.66199 10.49802 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.046032 B = 0.003812 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.128788 B = 7343.757365 C = 7645.612419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.024 3.976 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.528 5.528 10 C 0.366 3.634 11 C -0.261 4.261 12 C -0.011 4.011 13 C -0.287 4.287 14 C 0.133 3.867 15 O -0.370 6.370 16 C 0.060 3.940 17 C -0.158 4.158 18 C -0.143 4.143 19 C -0.138 4.138 20 C 0.184 3.816 21 N -0.579 5.579 22 H 0.278 0.722 23 H 0.404 0.596 24 H 0.123 0.877 25 H 0.110 0.890 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -13.937 -1.675 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.133 5.133 10 C 0.122 3.878 11 C -0.288 4.288 12 C -0.036 4.036 13 C -0.296 4.296 14 C 0.057 3.943 15 O -0.289 6.289 16 C 0.001 3.999 17 C -0.196 4.196 18 C -0.180 4.180 19 C -0.175 4.175 20 C 0.020 3.980 21 N -0.300 5.300 22 H 0.088 0.912 23 H 0.239 0.761 24 H 0.140 0.860 25 H 0.128 0.872 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.547 -13.196 -1.817 15.827 hybrid contribution 0.968 0.665 0.194 1.190 sum 9.515 -12.531 -1.623 15.818 Atomic orbital electron populations 1.69698 1.06104 1.28987 1.47055 1.25377 0.95785 1.00089 0.96829 0.85816 0.78829 0.79867 0.79232 1.19538 1.20572 1.19562 1.19738 0.93111 0.82190 1.48360 0.87726 1.40861 1.08802 1.01227 1.62402 1.18343 0.88679 0.86020 0.94778 1.21097 0.93609 0.98179 1.15961 1.20827 0.98221 0.91649 0.92878 1.19568 0.94675 0.93389 1.21974 1.20953 0.97314 0.93299 0.82743 1.88138 1.78310 1.34951 1.27520 1.23629 0.92488 0.86386 0.97377 1.23515 0.97526 0.98569 1.00016 1.22687 0.96844 0.97742 1.00752 1.23188 0.96423 0.99450 0.98481 1.21837 0.90851 0.94105 0.91227 1.67111 1.40335 0.97407 1.25108 0.91186 0.76059 0.85961 0.87225 0.93989 0.93797 0.90085 0.89303 0.91667 0.90294 0.91054 0.91332 0.89205 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 13.05 55.49 0.72 -22.99 16 2 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 3 Si 0.94 19.60 29.55 -169.99 -5.02 14.58 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.30 -7.88 9.54 -15.07 -0.14 -8.03 16 8 H 0.11 2.57 5.65 -52.49 -0.30 2.27 16 9 N -0.53 -13.76 5.44 -11.15 -0.06 -13.82 16 10 C 0.37 8.94 7.62 -155.07 -1.18 7.76 16 11 C -0.26 -5.81 9.33 -39.18 -0.37 -6.17 16 12 C -0.01 -0.21 9.85 -39.31 -0.39 -0.59 16 13 C -0.29 -5.37 5.53 -104.43 -0.58 -5.95 16 14 C 0.13 2.01 5.93 36.01 0.21 2.22 16 15 O -0.37 -5.79 10.34 -35.23 -0.36 -6.15 16 16 C 0.06 0.70 4.29 -25.92 -0.11 0.59 16 17 C -0.16 -1.64 7.93 -25.83 -0.20 -1.85 16 18 C -0.14 -1.24 8.09 -25.83 -0.21 -1.45 16 19 C -0.14 -1.42 7.92 -25.91 -0.21 -1.63 16 20 C 0.18 3.70 10.85 -17.57 -0.19 3.51 16 21 N -0.58 -13.57 10.39 -12.43 -0.13 -13.69 16 22 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 23 H 0.40 10.90 8.01 -40.82 -0.33 10.58 16 24 H 0.12 2.65 5.94 -52.49 -0.31 2.34 16 25 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.04 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.08 0.82 7.88 -51.93 -0.41 0.41 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -28.16 299.42 -8.50 -36.66 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -4.70 Total: 11.97 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.46 Total: -11.06 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.53 Total: -50.50 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.36 Total: -6.15 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.16 -8.50 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.897 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds