Wall clock time and date at job start Mon Mar 30 2020 18:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86800 * 120.00248 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00160 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99812 * 3 2 1 7 7 C 1.38811 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36915 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.38834 * 120.00338 * 179.72824 * 9 7 2 11 11 C 1.39232 * 119.70654 * 359.72283 * 10 9 7 12 12 C 1.38321 * 119.08433 * 179.73325 * 11 10 9 13 13 C 1.38880 * 118.50460 * 0.53313 * 12 11 10 14 14 C 1.50699 * 120.32629 * 179.74643 * 13 12 11 15 15 O 1.42902 * 109.47558 * 269.98249 * 14 13 12 16 16 C 1.42903 * 113.99940 * 180.02562 * 15 14 13 17 17 C 1.53774 * 113.61435 * 249.13151 * 16 15 14 18 18 C 1.53956 * 87.02116 * 220.05242 * 17 16 15 19 19 C 1.53783 * 87.11161 * 25.36273 * 18 17 16 20 20 C 1.38121 * 119.34281 * 359.73038 * 13 12 11 21 21 N 1.31898 * 120.86558 * 359.97438 * 20 13 12 22 22 H 0.97004 * 119.99382 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99808 * 359.97438 * 9 7 2 24 24 H 1.07991 * 120.45745 * 0.02562 * 11 10 9 25 25 H 1.08001 * 120.74164 * 180.25672 * 12 11 10 26 26 H 1.09007 * 109.47218 * 29.98165 * 14 13 12 27 27 H 1.08996 * 109.47020 * 149.97847 * 14 13 12 28 28 H 1.09002 * 112.85087 * 20.33164 * 16 15 14 29 29 H 1.09003 * 113.61302 * 334.57489 * 17 16 15 30 30 H 1.09005 * 113.61629 * 105.47007 * 17 16 15 31 31 H 1.09007 * 113.53350 * 270.81101 * 18 17 16 32 32 H 1.09000 * 113.66358 * 139.93506 * 18 17 16 33 33 H 1.08999 * 113.61200 * 220.09217 * 19 18 17 34 34 H 1.09002 * 113.68853 * 89.19522 * 19 18 17 35 35 H 1.08002 * 119.56716 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1035 1.6963 1.2126 7 6 2.0097 -1.2022 -0.0005 8 1 3.0897 -1.2023 -0.0010 9 7 1.3251 -2.3879 -0.0005 10 6 2.0192 -3.5902 -0.0068 11 6 3.4115 -3.5832 -0.0189 12 6 4.0900 -4.7885 -0.0193 13 6 3.3516 -5.9648 -0.0190 14 6 4.0487 -7.3008 -0.0253 15 8 4.2629 -7.7201 -1.3745 16 6 4.9209 -8.9831 -1.4931 17 6 6.3514 -8.8827 -2.0482 18 6 6.0394 -10.1528 -2.8605 19 6 4.5580 -9.7485 -2.7767 20 6 1.9720 -5.8979 -0.0126 21 7 1.3510 -4.7342 -0.0063 22 1 -0.4849 0.8401 0.0004 23 1 0.3551 -2.3878 0.0002 24 1 3.9541 -2.6495 -0.0230 25 1 5.1697 -4.8143 -0.0244 26 1 5.0082 -7.2124 0.4844 27 1 3.4301 -8.0357 0.4897 28 1 4.8448 -9.5866 -0.5886 29 1 6.5194 -8.0000 -2.6653 30 1 7.1240 -9.0253 -1.2926 31 1 6.2706 -11.0765 -2.3299 32 1 6.4406 -10.1336 -3.8737 33 1 3.8849 -10.5891 -2.6084 34 1 4.2334 -9.1030 -3.5929 35 1 1.3942 -6.8103 -0.0128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:37 Heat of formation + Delta-G solvation = -7.081474 kcal Electronic energy + Delta-G solvation = -17010.103036 eV Core-core repulsion = 14200.971519 eV Total energy + Delta-G solvation = -2809.131517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88115 -39.95474 -37.47379 -36.54149 -33.94570 -33.06529 -31.00453 -27.57840 -26.49566 -25.91134 -24.97780 -24.27552 -22.29583 -20.47712 -19.72069 -18.56784 -17.92489 -17.25704 -16.69967 -16.38293 -15.76986 -15.66378 -15.20744 -15.07172 -14.90216 -14.53398 -13.66079 -13.53626 -13.31048 -13.06565 -12.98365 -12.96316 -12.52525 -12.30164 -12.13183 -11.99414 -11.69881 -11.51439 -11.22863 -10.65778 -10.45828 -10.26011 -10.00604 -8.75348 -8.52636 -5.82634 0.62710 0.77631 1.41426 1.49941 1.53628 2.23737 2.76949 3.09512 3.16476 3.52586 3.75998 3.81361 3.97135 4.03167 4.03778 4.22056 4.35196 4.45449 4.50698 4.64650 4.73583 4.88022 4.91945 4.95550 5.08909 5.09475 5.15577 5.27616 5.31857 5.42687 5.48796 5.69552 5.78306 6.19538 6.54804 6.68483 7.12140 7.40245 7.82577 8.66062 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.046032 B = 0.003812 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.128788 B = 7343.757365 C = 7645.612419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.027 4.027 3 Si 1.006 2.994 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.323 4.323 8 H 0.111 0.889 9 N -0.560 5.560 10 C 0.352 3.648 11 C -0.279 4.279 12 C -0.007 4.007 13 C -0.266 4.266 14 C 0.135 3.865 15 O -0.397 6.397 16 C 0.049 3.951 17 C -0.161 4.161 18 C -0.131 4.131 19 C -0.143 4.143 20 C 0.168 3.832 21 N -0.604 5.604 22 H 0.277 0.723 23 H 0.390 0.610 24 H 0.122 0.878 25 H 0.144 0.856 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.151 -16.265 -1.519 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.227 4.227 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.453 4.453 8 H 0.129 0.871 9 N -0.168 5.168 10 C 0.110 3.890 11 C -0.306 4.306 12 C -0.032 4.032 13 C -0.274 4.274 14 C 0.058 3.942 15 O -0.317 6.317 16 C -0.009 4.009 17 C -0.198 4.198 18 C -0.168 4.168 19 C -0.180 4.180 20 C 0.006 3.994 21 N -0.325 5.325 22 H 0.087 0.913 23 H 0.224 0.776 24 H 0.140 0.860 25 H 0.162 0.838 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.082 -15.613 -1.664 19.218 hybrid contribution 0.324 0.966 0.120 1.026 sum 11.406 -14.647 -1.544 18.629 Atomic orbital electron populations 1.69821 1.07656 1.29564 1.49566 1.26329 0.96574 1.03267 0.96523 0.84776 0.77476 0.75356 0.79536 1.18809 1.20495 1.18656 1.20056 0.93523 0.82753 1.48968 0.87122 1.40869 1.08046 1.01874 1.65989 1.18750 0.89696 0.86078 0.94436 1.21263 0.92877 0.99569 1.16885 1.21265 1.00053 0.90763 0.91105 1.20111 0.94382 0.95347 1.17553 1.20977 0.98380 0.91515 0.83284 1.88075 1.79166 1.37125 1.27371 1.23997 0.92969 0.85128 0.98780 1.23502 0.97145 0.98813 1.00378 1.22685 0.95182 0.97762 1.01164 1.23216 0.97996 0.99468 0.97348 1.22480 0.92178 0.94047 0.90653 1.67129 1.41515 0.98172 1.25683 0.91326 0.77623 0.85989 0.83786 0.91911 0.91484 0.87975 0.90940 0.90294 0.88255 0.90489 0.90056 0.90942 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.16 13.05 21.65 0.28 -51.88 16 2 C -0.03 -1.44 5.50 84.87 0.47 -0.97 16 3 Si 1.01 41.02 29.55 68.60 2.03 43.05 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.32 -17.42 9.54 84.04 0.80 -16.61 16 8 H 0.11 5.58 5.65 -2.91 -0.02 5.57 16 9 N -0.56 -30.58 5.44 -189.20 -1.03 -31.60 16 10 C 0.35 17.57 7.62 133.12 1.01 18.59 16 11 C -0.28 -12.32 9.33 22.53 0.21 -12.11 16 12 C -0.01 -0.24 9.85 22.44 0.22 -0.02 16 13 C -0.27 -9.19 5.53 -19.74 -0.11 -9.30 16 14 C 0.13 3.50 5.93 71.24 0.42 3.92 16 15 O -0.40 -11.15 10.34 -148.98 -1.54 -12.69 16 16 C 0.05 0.97 4.29 31.12 0.13 1.11 16 17 C -0.16 -2.82 7.93 31.18 0.25 -2.58 16 18 C -0.13 -1.83 8.09 31.18 0.25 -1.57 16 19 C -0.14 -2.56 7.92 31.12 0.25 -2.31 16 20 C 0.17 6.47 10.85 84.65 0.92 7.39 16 21 N -0.60 -28.47 10.39 -193.23 -2.01 -30.48 16 22 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.39 22.47 8.01 -92.70 -0.74 21.73 16 24 H 0.12 5.31 5.94 -2.92 -0.02 5.30 16 25 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 26 H 0.06 1.41 8.09 -2.38 -0.02 1.39 16 27 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 28 H 0.10 1.61 7.88 -2.39 -0.02 1.59 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -63.02 299.42 2.91 -60.11 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: 0.35 Total: 37.98 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.82 Total: -14.48 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -2.76 Total: -113.96 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.54 Total: -12.69 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -63.02 2.91 -60.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.030 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds