Wall clock time and date at job start Mon Mar 30 2020 18:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48498 * 109.46796 * 179.72935 * 3 2 1 5 5 H 1.48493 * 109.47391 * 299.72866 * 3 2 1 6 6 H 1.48505 * 109.46858 * 59.73247 * 3 2 1 7 7 C 1.40018 * 120.00001 * 179.73303 * 2 1 3 8 8 H 1.08002 * 120.00049 * 206.99091 * 7 2 1 9 9 C 1.41555 * 120.00311 * 26.99240 * 7 2 1 10 10 C 1.41190 * 120.99342 * 203.97567 * 9 7 2 11 11 C 1.36561 * 119.14512 * 179.78876 * 10 9 7 12 12 N 1.32097 * 121.26316 * 0.50105 * 11 10 9 13 13 C 1.32524 * 122.21997 * 359.72978 * 12 11 10 14 14 N 1.39084 * 119.65616 * 180.02562 * 13 12 11 15 15 C 1.46498 * 120.00200 * 180.02562 * 14 13 12 16 16 H 1.09001 * 112.85083 * 23.80009 * 15 14 13 17 17 C 1.53781 * 113.61788 * 154.99956 * 15 14 13 18 18 C 1.53785 * 87.08177 * 139.97772 * 17 15 14 19 19 H 1.09005 * 113.60846 * 89.19966 * 18 17 15 20 20 C 1.53002 * 113.61426 * 220.01803 * 18 17 15 21 21 O 1.42903 * 109.46768 * 185.00329 * 20 18 17 22 22 C 1.53779 * 87.08089 * 334.56824 * 18 17 15 23 23 C 1.38740 * 120.68913 * 0.02562 * 13 12 11 24 24 H 0.97002 * 119.99690 * 184.25944 * 1 2 3 25 25 H 1.08000 * 120.42481 * 0.02842 * 10 9 7 26 26 H 1.07992 * 119.36403 * 180.22876 * 11 10 9 27 27 H 0.97000 * 119.99783 * 0.02562 * 14 13 12 28 28 H 1.09004 * 113.61543 * 254.52812 * 17 15 14 29 29 H 1.09000 * 113.61408 * 25.34537 * 17 15 14 30 30 H 1.09004 * 109.47133 * 305.00045 * 20 18 17 31 31 H 1.08994 * 109.46908 * 64.99985 * 20 18 17 32 32 H 0.96697 * 113.99412 * 180.02562 * 21 20 18 33 33 H 1.08997 * 113.61462 * 270.88479 * 22 18 17 34 34 H 1.08998 * 113.61471 * 139.97672 * 22 18 17 35 35 H 1.08003 * 120.66842 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0066 5 1 1.8877 2.3936 -1.2157 6 1 1.8777 2.3993 1.2093 7 6 2.0076 -1.2126 0.0057 8 1 2.9994 -1.2615 0.4304 9 6 1.4155 -2.3743 -0.5453 10 6 1.8237 -3.6624 -0.1359 11 6 1.2239 -4.7574 -0.6891 12 7 0.2792 -4.6326 -1.6041 13 6 -0.1403 -3.4498 -2.0297 14 7 -1.1391 -3.3805 -2.9952 15 6 -1.6082 -2.0770 -3.4715 16 1 -0.8701 -1.2863 -3.3366 17 6 -2.2146 -2.1190 -4.8841 18 6 -3.2827 -1.1395 -4.3695 19 1 -3.0039 -0.0916 -4.4810 20 6 -4.6901 -1.4385 -4.8897 21 8 -5.5864 -0.4141 -4.4545 22 6 -3.0118 -1.7048 -2.9653 23 6 0.4062 -2.2799 -1.5222 24 1 -0.4850 -0.8378 0.0624 25 1 2.5976 -3.7801 0.6082 26 1 1.5307 -5.7443 -0.3758 27 1 -1.5250 -4.1952 -3.3531 28 1 -1.5660 -1.6947 -5.6506 29 1 -2.6125 -3.0957 -5.1596 30 1 -4.6757 -1.4700 -5.9792 31 1 -5.0234 -2.4015 -4.5028 32 1 -6.4992 -0.5395 -4.7481 33 1 -3.6289 -2.5679 -2.7156 34 1 -3.0067 -0.9462 -2.1827 35 1 0.0643 -1.3162 -1.8696 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157460361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:39 Heat of formation + Delta-G solvation = -11.116086 kcal Electronic energy + Delta-G solvation = -17733.033979 eV Core-core repulsion = 14923.727508 eV Total energy + Delta-G solvation = -2809.306471 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47097 -38.23200 -36.37495 -34.43236 -33.26913 -30.23721 -28.49990 -26.99213 -25.69146 -25.43757 -22.60753 -21.37932 -20.41956 -19.40462 -18.14804 -17.33271 -15.91459 -15.85818 -15.19382 -14.50869 -14.47920 -14.18630 -13.84460 -13.40902 -13.27704 -12.89565 -12.31352 -12.18186 -12.00242 -11.78667 -11.34247 -11.15602 -10.92436 -10.57671 -10.44639 -10.35664 -10.05865 -9.94084 -9.83644 -9.20377 -8.93805 -8.07158 -7.99389 -7.27092 -6.55041 -4.60148 2.85483 2.94321 3.14920 3.33464 3.38353 3.95258 3.99622 4.23692 4.65448 4.71857 4.77131 5.07011 5.14655 5.37228 5.45519 5.53162 5.66730 5.83018 5.87793 5.91008 6.06430 6.30205 6.38328 6.52569 6.67775 6.84100 6.89381 6.99004 7.37918 7.54153 7.66326 7.70384 7.93015 8.13547 8.15639 8.62582 8.79651 8.86273 9.67976 10.02132 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.007109 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.381379 B = 3937.537190 C = 5224.103551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.041 3.959 3 Si 1.069 2.931 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.137 3.863 10 C -0.306 4.306 11 C 0.138 3.862 12 N -0.631 5.631 13 C 0.403 3.597 14 N -0.729 5.729 15 C 0.147 3.853 16 H 0.108 0.892 17 C -0.140 4.140 18 C -0.111 4.111 19 H 0.099 0.901 20 C 0.089 3.911 21 O -0.572 6.572 22 C -0.147 4.147 23 C -0.336 4.336 24 H 0.302 0.698 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.389 0.611 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.375 0.625 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 0.064 -8.182 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.182 4.182 3 Si 0.892 3.108 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.096 0.904 9 C 0.129 3.871 10 C -0.331 4.331 11 C -0.013 4.013 12 N -0.355 5.355 13 C 0.174 3.826 14 N -0.362 5.362 15 C 0.040 3.960 16 H 0.126 0.874 17 C -0.178 4.178 18 C -0.130 4.130 19 H 0.117 0.883 20 C 0.011 3.989 21 O -0.376 6.376 22 C -0.186 4.186 23 C -0.363 4.363 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.137 0.863 27 H 0.223 0.777 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.221 0.779 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.961 1.341 -8.295 10.912 hybrid contribution -0.105 -1.552 0.051 1.556 sum -7.066 -0.211 -8.245 10.860 Atomic orbital electron populations 1.70366 1.08276 1.34555 1.27758 1.27033 0.95677 1.04288 0.91227 0.83603 0.75607 0.73425 0.78133 1.20075 1.19912 1.20321 1.20605 1.04027 0.94050 1.35873 0.90423 1.17641 0.88855 0.92485 0.88090 1.21426 1.09217 0.93707 1.08756 1.21268 0.91460 0.96929 0.91621 1.66797 1.21523 1.25531 1.21637 1.18068 0.87063 0.89950 0.87486 1.44145 1.41537 1.06094 1.44434 1.22180 0.94469 0.87092 0.92293 0.87385 1.23383 0.97284 0.99353 0.97821 1.22343 0.92623 1.00295 0.97702 0.88307 1.22178 0.89644 0.89925 0.97108 1.86542 1.22091 1.49943 1.79064 1.23593 0.97808 1.00855 0.96365 1.21272 1.10534 0.96298 1.08189 0.88436 0.88454 0.86324 0.77710 0.90864 0.89915 0.93875 0.93658 0.77931 0.90256 0.90741 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.76 12.39 55.55 0.69 -20.08 16 2 C 0.04 1.05 4.95 -17.35 -0.09 0.97 16 3 Si 1.07 21.58 30.01 -169.99 -5.10 16.48 16 4 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.52 -13.82 9.04 -37.65 -0.34 -14.16 16 8 H 0.08 2.03 7.97 -52.49 -0.42 1.61 16 9 C 0.14 3.72 5.33 -106.55 -0.57 3.16 16 10 C -0.31 -7.73 9.85 -39.07 -0.38 -8.12 16 11 C 0.14 3.29 11.10 -18.04 -0.20 3.09 16 12 N -0.63 -15.50 10.36 -12.82 -0.13 -15.64 16 13 C 0.40 9.74 7.65 -154.98 -1.19 8.55 16 14 N -0.73 -14.25 5.53 -53.20 -0.29 -14.54 16 15 C 0.15 2.52 4.03 -67.12 -0.27 2.25 16 16 H 0.11 2.10 6.10 -51.93 -0.32 1.79 16 17 C -0.14 -1.82 7.39 -25.92 -0.19 -2.01 16 18 C -0.11 -1.47 4.01 -89.81 -0.36 -1.83 16 19 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 20 C 0.09 0.99 6.89 37.16 0.26 1.25 16 21 O -0.57 -6.78 13.66 -35.23 -0.48 -7.26 16 22 C -0.15 -2.34 7.43 -25.92 -0.19 -2.54 16 23 C -0.34 -8.74 7.24 -38.44 -0.28 -9.01 16 24 H 0.30 8.31 6.68 -40.82 -0.27 8.04 16 25 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.39 6.92 8.85 -40.82 -0.36 6.56 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.47 7.84 -51.93 -0.41 0.06 16 32 H 0.37 2.53 9.12 45.56 0.42 2.95 16 33 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.11 2.94 4.56 -52.48 -0.24 2.70 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -30.27 293.96 -8.46 -38.73 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -3.76 Total: 16.30 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.80 Total: -18.41 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.26 Total: -50.26 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.48 Total: -7.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.10 Total: 16.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.27 -8.46 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157460361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.610 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds