Wall clock time and date at job start Mon Mar 30 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86795 * 120.00404 * 2 1 4 4 H 1.48496 * 109.47032 * 275.38749 * 3 2 1 5 5 H 1.48496 * 109.47259 * 35.38573 * 3 2 1 6 6 H 1.48502 * 109.47107 * 155.38771 * 3 2 1 7 7 C 1.39957 * 119.99283 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00120 * 342.13590 * 7 2 1 9 9 C 1.41017 * 119.99423 * 162.14129 * 7 2 1 10 10 C 1.41002 * 120.70578 * 330.08968 * 9 7 2 11 11 C 1.38015 * 118.27824 * 180.26473 * 10 9 7 12 12 C 1.38683 * 119.62461 * 359.51657 * 11 10 9 13 13 N 1.31965 * 121.45081 * 0.26728 * 12 11 10 14 14 C 1.32272 * 121.86231 * 359.97438 * 13 12 11 15 15 N 1.38088 * 119.90240 * 179.97438 * 14 13 12 16 16 C 1.46508 * 120.00029 * 359.97438 * 15 14 13 17 17 C 1.53174 * 109.54302 * 274.81928 * 16 15 14 18 18 C 1.53103 * 109.15694 * 183.24047 * 17 16 15 19 19 O 1.42896 * 109.48819 * 57.47719 * 18 17 16 20 20 C 1.42909 * 114.09825 * 298.89141 * 19 18 17 21 21 C 1.53084 * 109.41498 * 61.15486 * 20 19 18 22 22 H 0.97005 * 119.99365 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.86267 * 0.03323 * 10 9 7 24 24 H 1.07998 * 120.18419 * 179.79220 * 11 10 9 25 25 H 1.08004 * 119.27164 * 180.25309 * 12 11 10 26 26 H 0.97004 * 120.00271 * 179.97438 * 15 14 13 27 27 H 1.09002 * 109.54375 * 35.00057 * 16 15 14 28 28 H 1.08999 * 109.52715 * 303.06218 * 17 16 15 29 29 H 1.09009 * 109.52060 * 63.24687 * 17 16 15 30 30 H 1.09003 * 109.40790 * 297.49328 * 18 17 16 31 31 H 1.08999 * 109.48521 * 177.50445 * 18 17 16 32 32 H 1.09000 * 109.47871 * 301.17357 * 20 19 18 33 33 H 1.09000 * 109.48605 * 181.14417 * 20 19 18 34 34 H 1.08998 * 109.52317 * 182.48806 * 21 20 19 35 35 H 1.08999 * 109.57768 * 62.33216 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3765 2.1120 -1.3939 5 1 1.5019 2.6171 0.8107 6 1 3.5927 1.4098 0.5831 7 6 2.0084 -1.2121 0.0005 8 1 1.5073 -2.1247 0.2878 9 6 3.3676 -1.2418 -0.3740 10 6 3.8791 -0.3117 -1.3021 11 6 5.2157 -0.3897 -1.6370 12 6 6.0134 -1.3618 -1.0521 13 7 5.5222 -2.2231 -0.1813 14 6 4.2493 -2.2041 0.1778 15 7 3.7781 -3.1252 1.0923 16 6 4.6876 -4.1220 1.6630 17 6 4.7801 -5.3284 0.7238 18 6 5.6678 -6.3980 1.3657 19 8 5.1317 -6.7609 2.6396 20 6 5.0670 -5.6817 3.5742 21 6 4.1535 -4.5844 3.0222 22 1 -0.4849 0.8401 0.0004 23 1 3.2407 0.4399 -1.7425 24 1 5.6390 0.3051 -2.3472 25 1 7.0595 -1.4151 -1.3152 26 1 2.8450 -3.1123 1.3570 27 1 5.6769 -3.6824 1.7904 28 1 3.7835 -5.7367 0.5559 29 1 5.2121 -5.0173 -0.2274 30 1 6.6755 -6.0028 1.4945 31 1 5.7015 -7.2769 0.7218 32 1 6.0668 -5.2771 3.7320 33 1 4.6680 -6.0445 4.5215 34 1 4.1377 -3.7416 3.7132 35 1 3.1433 -4.9761 2.9024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161858802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:44 Heat of formation + Delta-G solvation = -40.231031 kcal Electronic energy + Delta-G solvation = -18127.605286 eV Core-core repulsion = 15317.036296 eV Total energy + Delta-G solvation = -2810.568990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83378 -39.94719 -36.67509 -35.78333 -33.17202 -33.00962 -32.02183 -30.08971 -27.16747 -25.43614 -24.50023 -23.46929 -22.48489 -21.16597 -19.38225 -18.49488 -17.69126 -17.04145 -16.88385 -16.48505 -15.78167 -15.53816 -15.42291 -15.15622 -14.84745 -14.53049 -14.35270 -13.79359 -13.72289 -13.33406 -13.21524 -12.66149 -12.47070 -12.26283 -12.11295 -11.97302 -11.73200 -11.32171 -11.28838 -10.76942 -10.59695 -10.09818 -9.90549 -8.87541 -8.49224 -6.31669 0.73100 0.91999 1.25212 1.37092 1.46690 2.11125 2.62622 2.68592 2.99277 3.57940 3.79949 3.95691 4.06184 4.09726 4.26265 4.31843 4.34573 4.53414 4.59928 4.68822 4.74007 4.77864 4.81023 4.90995 5.05639 5.09796 5.17775 5.23085 5.35479 5.52241 5.73614 5.96425 6.21383 6.25762 6.42698 6.72126 6.78856 6.98651 7.77625 8.19987 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.006836 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.528471 B = 4094.727789 C = 4734.653559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.051 3.949 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.466 4.466 8 H 0.066 0.934 9 C -0.015 4.015 10 C -0.205 4.205 11 C -0.184 4.184 12 C 0.017 3.983 13 N -0.536 5.536 14 C 0.321 3.679 15 N -0.720 5.720 16 C 0.163 3.837 17 C -0.158 4.158 18 C 0.070 3.930 19 O -0.398 6.398 20 C 0.068 3.932 21 C -0.159 4.159 22 H 0.291 0.709 23 H 0.104 0.896 24 H 0.134 0.866 25 H 0.161 0.839 26 H 0.403 0.597 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 -5.968 4.263 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.163 4.163 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.084 0.916 9 C -0.023 4.023 10 C -0.231 4.231 11 C -0.207 4.207 12 C -0.135 4.135 13 N -0.254 5.254 14 C 0.081 3.919 15 N -0.356 5.356 16 C 0.057 3.943 17 C -0.198 4.198 18 C -0.007 4.007 19 O -0.317 6.317 20 C -0.009 4.009 21 C -0.198 4.198 22 H 0.102 0.898 23 H 0.122 0.878 24 H 0.152 0.848 25 H 0.178 0.822 26 H 0.239 0.761 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.611 -6.756 4.699 12.653 hybrid contribution -1.188 1.803 -0.666 2.259 sum 8.423 -4.953 4.033 10.571 Atomic orbital electron populations 1.69731 1.08820 1.31127 1.37973 1.26621 0.95203 1.03580 0.90877 0.85540 0.79268 0.77471 0.79211 1.18639 1.20637 1.18659 1.19029 0.93460 0.95506 1.41741 0.91579 1.18254 0.93880 0.95096 0.95020 1.21252 0.96796 1.03403 1.01660 1.21638 0.94083 1.01593 1.03347 1.22169 0.99837 0.94062 0.97461 1.66775 1.12889 1.27642 1.18110 1.18664 0.88734 0.92295 0.92237 1.44107 1.11904 1.33291 1.46262 1.20757 0.93844 0.87547 0.92121 1.22548 1.00767 0.96571 0.99871 1.22582 0.95587 0.98141 0.84367 1.87882 1.84844 1.35385 1.23602 1.22650 0.98928 0.86706 0.92593 1.22474 1.00948 1.00148 0.96184 0.89811 0.87828 0.84812 0.82177 0.76067 0.91122 0.92590 0.92131 0.92125 0.87484 0.91931 0.86529 0.89991 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.56 13.93 21.83 0.30 -45.25 16 2 C 0.05 2.70 5.42 85.25 0.46 3.16 16 3 Si 0.96 42.75 24.53 68.60 1.68 44.43 16 4 H -0.26 -11.05 6.71 99.48 0.67 -10.38 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.18 6.84 99.48 0.68 -11.50 16 7 C -0.47 -25.02 8.93 23.37 0.21 -24.82 16 8 H 0.07 3.72 7.03 -2.91 -0.02 3.69 16 9 C -0.01 -0.76 5.12 -21.06 -0.11 -0.86 16 10 C -0.21 -9.72 7.28 22.89 0.17 -9.56 16 11 C -0.18 -7.56 10.08 22.32 0.22 -7.33 16 12 C 0.02 0.68 11.17 84.78 0.95 1.63 16 13 N -0.54 -23.34 9.17 -191.46 -1.76 -25.10 16 14 C 0.32 14.89 7.50 134.05 1.00 15.89 16 15 N -0.72 -29.14 5.13 -322.56 -1.66 -30.79 16 16 C 0.16 5.30 2.55 45.11 0.11 5.42 16 17 C -0.16 -4.81 5.73 30.69 0.18 -4.63 16 18 C 0.07 1.70 6.84 72.02 0.49 2.19 16 19 O -0.40 -10.11 10.77 -148.98 -1.60 -11.72 16 20 C 0.07 1.47 6.84 72.01 0.49 1.96 16 21 C -0.16 -4.17 5.61 30.68 0.17 -4.00 16 22 H 0.29 14.18 8.30 -92.70 -0.77 13.41 16 23 H 0.10 4.89 4.81 -2.91 -0.01 4.87 16 24 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 25 H 0.16 5.14 8.06 -2.91 -0.02 5.12 16 26 H 0.40 16.67 6.90 -92.70 -0.64 16.03 16 27 H 0.07 2.45 7.54 -2.39 -0.02 2.44 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 2.05 8.14 -2.38 -0.02 2.04 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -59.59 283.08 1.72 -57.88 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.39 Total: 31.50 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 4.35 Total: -20.95 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -3.11 Total: -101.14 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.60 Total: -11.72 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.68 Total: 44.43 kcal Total: -59.59 1.72 -57.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161858802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.644 kcal (2) G-P(sol) polarization free energy of solvation -59.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds