Wall clock time and date at job start Mon Mar 30 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48506 * 109.46832 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47365 * 299.99580 * 3 2 1 6 6 H 1.48498 * 109.47276 * 59.99925 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99517 * 180.02562 * 7 2 1 9 9 N 1.36906 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.38836 * 120.00293 * 179.97438 * 9 7 2 11 11 N 1.32517 * 119.70925 * 354.79885 * 10 9 7 12 12 C 1.31867 * 121.62173 * 179.97438 * 11 10 9 13 13 C 1.38166 * 120.86522 * 0.02562 * 12 11 10 14 14 C 1.38836 * 119.33695 * 0.02562 * 13 12 11 15 15 C 1.38356 * 118.50717 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.45564 * 180.02562 * 15 14 13 17 17 C 1.53175 * 109.54481 * 64.64037 * 16 15 14 18 18 C 1.53106 * 109.15858 * 183.24183 * 17 16 15 19 19 O 1.42901 * 109.48778 * 57.47651 * 18 17 16 20 20 C 1.42905 * 114.09309 * 298.88818 * 19 18 17 21 21 C 1.53084 * 109.41785 * 61.15907 * 20 19 18 22 22 H 0.97008 * 119.99528 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99648 * 359.97438 * 9 7 2 24 24 H 1.08003 * 119.56733 * 179.72131 * 12 11 10 25 25 H 1.08003 * 120.33212 * 179.97438 * 13 12 11 26 26 H 1.08000 * 120.74864 * 179.97438 * 14 13 12 27 27 H 1.09001 * 109.54671 * 184.81897 * 16 15 14 28 28 H 1.08999 * 109.52075 * 303.05949 * 17 16 15 29 29 H 1.08998 * 109.52381 * 63.24508 * 17 16 15 30 30 H 1.08995 * 109.40251 * 297.49281 * 18 17 16 31 31 H 1.09000 * 109.48019 * 177.50029 * 18 17 16 32 32 H 1.09006 * 109.48331 * 301.17499 * 20 19 18 33 33 H 1.08995 * 109.47998 * 181.14623 * 20 19 18 34 34 H 1.08999 * 109.52635 * 182.48421 * 21 20 19 35 35 H 1.09005 * 109.52552 * 62.29607 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0097 -1.2022 0.0005 8 1 3.0897 -1.2022 0.0010 9 7 1.3252 -2.3879 0.0005 10 6 2.0193 -3.5902 0.0005 11 7 3.3403 -3.5859 -0.1038 12 6 4.0373 -4.7054 -0.1073 13 6 3.4093 -5.9316 -0.0020 14 6 2.0262 -5.9803 0.1082 15 6 1.3215 -4.7896 0.1091 16 6 -0.1808 -4.7913 0.2270 17 6 -0.5869 -5.3501 1.5942 18 6 -2.1141 -5.4235 1.6735 19 8 -2.6087 -6.2327 0.6046 20 6 -2.2999 -5.7316 -0.6976 21 6 -0.7803 -5.6726 -0.8731 22 1 -0.4850 0.8402 -0.0004 23 1 0.3551 -2.3878 0.0005 24 1 5.1126 -4.6634 -0.1986 25 1 3.9886 -6.8432 -0.0061 26 1 1.5119 -6.9263 0.1914 27 1 -0.5559 -3.7731 0.1233 28 1 -0.1685 -6.3489 1.7183 29 1 -0.2109 -4.6964 2.3812 30 1 -2.5296 -4.4192 1.5914 31 1 -2.4079 -5.8619 2.6273 32 1 -2.7179 -4.7313 -0.8107 33 1 -2.7276 -6.3918 -1.4520 34 1 -0.5424 -5.2494 -1.8490 35 1 -0.3659 -6.6782 -0.8004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:47 Heat of formation + Delta-G solvation = -18.179634 kcal Electronic energy + Delta-G solvation = -18199.291233 eV Core-core repulsion = 15389.678464 eV Total energy + Delta-G solvation = -2809.612770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78555 -38.45295 -35.21741 -34.30655 -31.95245 -30.85897 -30.40309 -28.46468 -24.85348 -24.81868 -23.27125 -21.97404 -21.08220 -19.46132 -17.92260 -16.88578 -16.06455 -15.77759 -15.25621 -14.65870 -14.47671 -14.21791 -13.80224 -13.72346 -13.38422 -12.98335 -12.70213 -12.20980 -12.12116 -11.59560 -11.40838 -11.30505 -11.09250 -10.65624 -10.54185 -10.40473 -10.35698 -10.23019 -9.95911 -9.34244 -8.85456 -8.56566 -8.18405 -6.95600 -6.56713 -3.74592 2.26223 2.46668 3.17511 3.19526 3.26041 4.05690 4.07095 4.70388 4.84418 5.09971 5.11238 5.16349 5.24947 5.35029 5.51390 5.57556 5.68908 5.73904 5.78383 5.86066 5.99448 6.09720 6.14383 6.18576 6.31441 6.46406 6.56830 6.59633 6.77420 7.07659 7.30217 7.36587 7.41370 7.60646 7.95752 8.69595 9.02398 9.30292 9.73731 10.60083 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.007790 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.441966 B = 3593.673548 C = 4720.076696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.014 3.986 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.280 4.280 8 H 0.112 0.888 9 N -0.536 5.536 10 C 0.369 3.631 11 N -0.551 5.551 12 C 0.158 3.842 13 C -0.310 4.310 14 C -0.021 4.021 15 C -0.238 4.238 16 C -0.028 4.028 17 C -0.142 4.142 18 C 0.059 3.941 19 O -0.388 6.388 20 C 0.059 3.941 21 C -0.143 4.143 22 H 0.273 0.727 23 H 0.405 0.595 24 H 0.133 0.867 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -9.084 0.589 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.188 4.188 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.411 4.411 8 H 0.130 0.870 9 N -0.144 5.144 10 C 0.126 3.874 11 N -0.271 5.271 12 C -0.006 4.006 13 C -0.337 4.337 14 C -0.046 4.046 15 C -0.248 4.248 16 C -0.048 4.048 17 C -0.180 4.180 18 C -0.017 4.017 19 O -0.307 6.307 20 C -0.017 4.017 21 C -0.181 4.181 22 H 0.083 0.917 23 H 0.243 0.757 24 H 0.150 0.850 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.148 -7.914 0.552 8.219 hybrid contribution -0.207 0.302 -0.004 0.366 sum -2.355 -7.612 0.548 7.987 Atomic orbital electron populations 1.69673 1.06006 1.28420 1.49536 1.25359 0.95762 1.00032 0.97694 0.85717 0.79685 0.80736 0.77803 1.19014 1.20680 1.20699 1.20016 0.93823 0.82072 1.45193 0.86981 1.41086 1.07977 1.01970 1.63397 1.18066 0.88347 0.85723 0.95287 1.67227 1.06497 1.30431 1.22941 1.22125 0.98482 0.87701 0.92305 1.21186 0.94874 0.98137 1.19470 1.20716 0.93688 0.96099 0.94114 1.19526 0.94430 0.92924 1.17929 1.19756 0.92136 0.98976 0.93907 1.22242 0.95717 1.01945 0.98114 1.22616 0.93731 0.95194 0.90187 1.87862 1.77482 1.50939 1.14410 1.22610 0.95137 0.99252 0.84728 1.22258 0.95427 1.00797 0.99649 0.91665 0.75686 0.84953 0.87522 0.87341 0.91006 0.91294 0.90912 0.93101 0.89271 0.93139 0.89292 0.90995 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 13.05 55.49 0.72 -23.28 16 2 C 0.01 0.36 5.50 -17.45 -0.10 0.27 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.28 -7.51 9.70 -15.07 -0.15 -7.66 16 8 H 0.11 3.07 7.09 -52.49 -0.37 2.70 16 9 N -0.54 -13.49 5.35 -11.16 -0.06 -13.55 16 10 C 0.37 8.63 7.41 -155.06 -1.15 7.48 16 11 N -0.55 -12.91 9.11 -12.43 -0.11 -13.02 16 12 C 0.16 3.09 11.18 -17.56 -0.20 2.90 16 13 C -0.31 -5.52 10.11 -39.39 -0.40 -5.92 16 14 C -0.02 -0.38 8.82 -39.32 -0.35 -0.72 16 15 C -0.24 -4.72 4.82 -104.23 -0.50 -5.22 16 16 C -0.03 -0.49 2.40 -91.59 -0.22 -0.71 16 17 C -0.14 -2.19 5.33 -26.59 -0.14 -2.33 16 18 C 0.06 0.83 6.84 37.21 0.25 1.08 16 19 O -0.39 -5.78 10.77 -35.23 -0.38 -6.16 16 20 C 0.06 0.81 6.84 37.20 0.25 1.07 16 21 C -0.14 -2.15 5.24 -26.60 -0.14 -2.29 16 22 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 23 H 0.40 10.05 5.52 -40.82 -0.23 9.82 16 24 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 25 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 26 H 0.11 1.68 7.20 -52.49 -0.38 1.31 16 27 H 0.07 1.38 5.70 -51.93 -0.30 1.08 16 28 H 0.07 1.03 7.66 -51.93 -0.40 0.63 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.01 7.09 -51.93 -0.37 0.64 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -28.27 286.87 -7.91 -36.18 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -4.55 Total: 12.08 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.83 Total: -12.06 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.55 Total: -49.85 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.38 Total: -6.16 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.27 -7.91 -36.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.997 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds