Wall clock time and date at job start Mon Mar 30 2020 18:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47054 * 269.99623 * 3 2 1 5 5 H 1.48495 * 109.47105 * 29.99829 * 3 2 1 6 6 H 1.48501 * 109.47211 * 149.99862 * 3 2 1 7 7 C 1.38768 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99368 * 0.02562 * 7 2 1 9 9 N 1.36820 * 120.00167 * 180.02562 * 7 2 1 10 10 C 1.39448 * 119.99843 * 180.02562 * 9 7 2 11 11 C 1.39602 * 120.44333 * 179.97438 * 10 9 7 12 12 C 1.38240 * 118.40946 * 179.97438 * 11 10 9 13 13 C 1.38975 * 119.20489 * 0.02562 * 12 11 10 14 14 O 1.35735 * 119.58442 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99928 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47046 * 180.02562 * 15 14 13 17 17 C 1.53782 * 113.61234 * 274.13491 * 16 15 14 18 18 C 1.53953 * 87.01947 * 220.04811 * 17 16 15 19 19 C 1.53775 * 113.61437 * 176.53228 * 16 15 14 20 20 N 1.32247 * 120.83156 * 0.25471 * 13 12 11 21 21 C 1.31898 * 121.73661 * 359.47594 * 20 13 12 22 22 H 0.97002 * 119.99947 * 0.02562 * 1 2 3 23 23 H 0.96997 * 120.00243 * 0.02562 * 9 7 2 24 24 H 1.07998 * 120.79346 * 359.96250 * 11 10 9 25 25 H 1.07996 * 120.39790 * 180.02562 * 12 11 10 26 26 H 1.08999 * 109.47144 * 300.00253 * 15 14 13 27 27 H 1.08998 * 109.47043 * 59.99851 * 15 14 13 28 28 H 1.09005 * 112.84931 * 45.33074 * 16 15 14 29 29 H 1.08996 * 113.61845 * 334.57211 * 17 16 15 30 30 H 1.09005 * 113.61418 * 105.46913 * 17 16 15 31 31 H 1.09005 * 113.53528 * 270.81261 * 18 17 16 32 32 H 1.09001 * 113.66578 * 139.93871 * 18 17 16 33 33 H 1.09002 * 113.61287 * 254.52402 * 19 16 15 34 34 H 1.08997 * 113.62129 * 25.34181 * 19 16 15 35 35 H 1.07995 * 119.64931 * 180.24549 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0100 -1.2017 0.0005 8 1 1.4699 -2.1370 0.0005 9 7 3.3782 -1.2017 0.0011 10 6 4.0754 -2.4094 0.0011 11 6 5.4714 -2.4203 0.0011 12 6 6.1196 -3.6413 0.0016 13 6 5.3661 -4.8090 0.0016 14 8 5.9947 -6.0121 0.0016 15 6 5.1666 -7.1767 0.0010 16 6 6.0466 -8.4282 0.0018 17 6 6.4851 -8.8737 -1.4033 18 6 6.2473 -10.3197 -0.9314 19 6 5.2504 -9.7411 0.0864 20 7 4.0445 -4.7629 -0.0040 21 6 3.3902 -3.6177 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 3.8632 -0.3618 0.0014 24 1 6.0314 -1.4969 0.0005 25 1 7.1986 -3.6871 0.0020 26 1 4.5368 -7.1752 0.8907 27 1 4.5376 -7.1748 -0.8892 28 1 6.8672 -8.3682 0.7168 29 1 5.8060 -8.5553 -2.1941 30 1 7.5289 -8.6521 -1.6257 31 1 7.1237 -10.7775 -0.4725 32 1 5.7825 -10.9552 -1.6852 33 1 5.2988 -10.2188 1.0650 34 1 4.2325 -9.6599 -0.2950 35 1 2.3103 -3.6193 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:52 Heat of formation + Delta-G solvation = 18.455134 kcal Electronic energy + Delta-G solvation = -17102.206873 eV Core-core repulsion = 14294.182706 eV Total energy + Delta-G solvation = -2808.024167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.74429 -38.84666 -37.13720 -35.07603 -32.25819 -31.28933 -29.16824 -27.52398 -25.67018 -24.57517 -23.46102 -21.96251 -21.25020 -19.45045 -18.42966 -17.60189 -16.38802 -15.99936 -15.59849 -15.09727 -14.75021 -14.37378 -13.85666 -13.30732 -13.18141 -12.97178 -12.73095 -12.51530 -12.27676 -12.20564 -11.66473 -11.51216 -11.33880 -10.94852 -10.73314 -10.58230 -10.41210 -10.31396 -10.13667 -9.85824 -9.11547 -8.72673 -8.62791 -6.76990 -6.52702 -3.80750 2.07376 2.34702 2.98215 3.01382 3.06556 3.72152 3.95815 4.55169 4.61336 4.61878 4.71598 4.75971 4.87304 5.10892 5.35509 5.42885 5.53076 5.64334 5.67760 5.75282 5.77602 5.80218 5.83476 5.95770 6.05690 6.12385 6.21120 6.43820 6.50256 6.73435 6.99776 7.20234 7.42691 7.77735 8.16752 8.48341 8.86831 9.16958 9.19870 10.58657 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.052235 B = 0.003958 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.909110 B = 7072.206928 C = 7480.228792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.039 3.961 3 Si 0.884 3.116 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.585 5.585 10 C 0.143 3.857 11 C -0.177 4.177 12 C -0.122 4.122 13 C 0.188 3.812 14 O -0.320 6.320 15 C 0.088 3.912 16 C -0.111 4.111 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.131 4.131 20 N -0.490 5.490 21 C 0.037 3.963 22 H 0.277 0.723 23 H 0.379 0.621 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -11.544 -0.664 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.165 4.165 3 Si 0.710 3.290 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.136 0.864 9 N -0.193 5.193 10 C 0.024 3.976 11 C -0.209 4.209 12 C -0.143 4.143 13 C 0.009 3.991 14 O -0.229 6.229 15 C 0.012 3.988 16 C -0.129 4.129 17 C -0.172 4.172 18 C -0.180 4.180 19 C -0.169 4.169 20 N -0.211 5.211 21 C -0.128 4.128 22 H 0.087 0.913 23 H 0.213 0.787 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.236 -12.158 -0.671 15.908 hybrid contribution 0.675 2.079 0.043 2.187 sum 10.911 -10.079 -0.628 14.867 Atomic orbital electron populations 1.69694 1.05559 1.28019 1.47948 1.24991 0.95582 0.98363 0.97571 0.86559 0.79786 0.83520 0.79088 1.19465 1.20014 1.19355 1.19411 0.79377 0.96621 1.47907 0.86387 1.41070 1.06021 1.03278 1.68961 1.18566 0.91122 0.88230 0.99722 1.20499 0.92254 0.97165 1.10943 1.20442 0.99452 0.89872 1.04532 1.19126 0.87968 0.85045 1.06990 1.86064 1.34626 1.11695 1.90561 1.22346 0.92381 0.82415 1.01646 1.22597 0.99118 0.92723 0.98500 1.22991 1.01828 0.95588 0.96775 1.22842 0.99459 0.96725 0.99019 1.22879 0.98779 0.95493 0.99743 1.66965 1.08388 1.30926 1.14800 1.21788 0.99404 0.84890 1.06729 0.91296 0.78714 0.86077 0.86033 0.92527 0.92423 0.88660 0.90016 0.91442 0.90320 0.91490 0.91320 0.89787 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.04 13.97 55.49 0.78 -23.26 16 2 C 0.04 1.01 5.50 -17.45 -0.10 0.91 16 3 Si 0.88 18.90 27.74 -169.99 -4.71 14.18 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.30 -7.78 10.05 -15.13 -0.15 -7.93 16 8 H 0.12 3.19 5.94 -52.49 -0.31 2.88 16 9 N -0.59 -13.24 5.25 -9.50 -0.05 -13.29 16 10 C 0.14 3.08 6.64 -83.64 -0.56 2.53 16 11 C -0.18 -3.35 10.04 -39.07 -0.39 -3.74 16 12 C -0.12 -2.24 10.03 -39.31 -0.39 -2.64 16 13 C 0.19 3.76 7.49 -17.10 -0.13 3.64 16 14 O -0.32 -5.79 10.12 -18.91 -0.19 -5.98 16 15 C 0.09 1.35 5.13 37.16 0.19 1.54 16 16 C -0.11 -1.31 4.00 -89.81 -0.36 -1.67 16 17 C -0.13 -1.43 7.65 -25.83 -0.20 -1.63 16 18 C -0.14 -1.27 8.09 -25.83 -0.21 -1.48 16 19 C -0.13 -1.28 7.64 -25.92 -0.20 -1.48 16 20 N -0.49 -10.42 9.20 -13.10 -0.12 -10.54 16 21 C 0.04 0.82 10.47 -17.28 -0.18 0.64 16 22 H 0.28 7.07 8.31 -40.82 -0.34 6.74 16 23 H 0.38 7.94 5.77 -40.82 -0.24 7.71 16 24 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 25 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 26 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 27 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.16 3.48 5.97 -52.49 -0.31 3.17 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -27.52 294.50 -7.18 -34.70 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.65 Total: 11.05 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.67 Total: -11.30 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.60 Total: -47.09 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.19 Total: -5.98 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.52 -7.18 -34.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.156 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds