Wall clock time and date at job start Mon Mar 30 2020 18:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47054 * 269.99623 * 3 2 1 5 5 H 1.48495 * 109.47105 * 29.99829 * 3 2 1 6 6 H 1.48501 * 109.47211 * 149.99862 * 3 2 1 7 7 C 1.38768 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99368 * 0.02562 * 7 2 1 9 9 N 1.36820 * 120.00167 * 180.02562 * 7 2 1 10 10 C 1.39448 * 119.99843 * 180.02562 * 9 7 2 11 11 C 1.39602 * 120.44333 * 179.97438 * 10 9 7 12 12 C 1.38240 * 118.40946 * 179.97438 * 11 10 9 13 13 C 1.38975 * 119.20489 * 0.02562 * 12 11 10 14 14 O 1.35735 * 119.58442 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99928 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47046 * 180.02562 * 15 14 13 17 17 C 1.53782 * 113.61234 * 274.13491 * 16 15 14 18 18 C 1.53953 * 87.01947 * 220.04811 * 17 16 15 19 19 C 1.53775 * 113.61437 * 176.53228 * 16 15 14 20 20 N 1.32247 * 120.83156 * 0.25471 * 13 12 11 21 21 C 1.31898 * 121.73661 * 359.47594 * 20 13 12 22 22 H 0.97002 * 119.99947 * 0.02562 * 1 2 3 23 23 H 0.96997 * 120.00243 * 0.02562 * 9 7 2 24 24 H 1.07998 * 120.79346 * 359.96250 * 11 10 9 25 25 H 1.07996 * 120.39790 * 180.02562 * 12 11 10 26 26 H 1.08999 * 109.47144 * 300.00253 * 15 14 13 27 27 H 1.08998 * 109.47043 * 59.99851 * 15 14 13 28 28 H 1.09005 * 112.84931 * 45.33074 * 16 15 14 29 29 H 1.08996 * 113.61845 * 334.57211 * 17 16 15 30 30 H 1.09005 * 113.61418 * 105.46913 * 17 16 15 31 31 H 1.09005 * 113.53528 * 270.81261 * 18 17 16 32 32 H 1.09001 * 113.66578 * 139.93871 * 18 17 16 33 33 H 1.09002 * 113.61287 * 254.52402 * 19 16 15 34 34 H 1.08997 * 113.62129 * 25.34181 * 19 16 15 35 35 H 1.07995 * 119.64931 * 180.24549 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0100 -1.2017 0.0005 8 1 1.4699 -2.1370 0.0005 9 7 3.3782 -1.2017 0.0011 10 6 4.0754 -2.4094 0.0011 11 6 5.4714 -2.4203 0.0011 12 6 6.1196 -3.6413 0.0016 13 6 5.3661 -4.8090 0.0016 14 8 5.9947 -6.0121 0.0016 15 6 5.1666 -7.1767 0.0010 16 6 6.0466 -8.4282 0.0018 17 6 6.4851 -8.8737 -1.4033 18 6 6.2473 -10.3197 -0.9314 19 6 5.2504 -9.7411 0.0864 20 7 4.0445 -4.7629 -0.0040 21 6 3.3902 -3.6177 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 3.8632 -0.3618 0.0014 24 1 6.0314 -1.4969 0.0005 25 1 7.1986 -3.6871 0.0020 26 1 4.5368 -7.1752 0.8907 27 1 4.5376 -7.1748 -0.8892 28 1 6.8672 -8.3682 0.7168 29 1 5.8060 -8.5553 -2.1941 30 1 7.5289 -8.6521 -1.6257 31 1 7.1237 -10.7775 -0.4725 32 1 5.7825 -10.9552 -1.6852 33 1 5.2988 -10.2188 1.0650 34 1 4.2325 -9.6599 -0.2950 35 1 2.3103 -3.6193 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:52 Heat of formation + Delta-G solvation = 1.224080 kcal Electronic energy + Delta-G solvation = -17102.954068 eV Core-core repulsion = 14294.182706 eV Total energy + Delta-G solvation = -2808.771361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29366 -39.93913 -38.56111 -36.75829 -34.10080 -32.92218 -30.55495 -28.98348 -26.51159 -26.38517 -24.81651 -23.24821 -22.90683 -20.38276 -20.20089 -19.08320 -18.09502 -17.38967 -16.94292 -16.47767 -16.09785 -15.66669 -15.45104 -14.88957 -14.67932 -14.55771 -14.10320 -13.92415 -13.54821 -13.33752 -13.05730 -12.94547 -12.65181 -12.46212 -12.32343 -11.97105 -11.61618 -11.46001 -11.24875 -11.02860 -10.85530 -10.36051 -10.29705 -8.50108 -8.42802 -5.76640 0.45314 0.71423 1.29918 1.36720 1.40048 2.20345 2.34607 2.85989 3.06602 3.28421 3.66303 3.71159 3.76070 3.89577 3.99407 4.22019 4.28002 4.37447 4.47436 4.61476 4.65997 4.86076 4.86749 4.92588 4.97135 5.09171 5.11695 5.14388 5.33470 5.35485 5.47504 5.58950 5.68616 5.92048 6.55351 6.67271 7.17985 7.31065 7.44125 8.72483 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.052235 B = 0.003958 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.909110 B = 7072.206928 C = 7480.228792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.018 4.018 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.309 4.309 8 H 0.083 0.917 9 N -0.597 5.597 10 C 0.133 3.867 11 C -0.153 4.153 12 C -0.118 4.118 13 C 0.192 3.808 14 O -0.320 6.320 15 C 0.086 3.914 16 C -0.113 4.113 17 C -0.138 4.138 18 C -0.131 4.131 19 C -0.129 4.129 20 N -0.507 5.507 21 C 0.012 3.988 22 H 0.277 0.723 23 H 0.388 0.612 24 H 0.160 0.840 25 H 0.161 0.839 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.540 -11.929 -0.630 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.217 4.217 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.166 1.166 7 C -0.439 4.439 8 H 0.101 0.899 9 N -0.210 5.210 10 C 0.017 3.983 11 C -0.184 4.184 12 C -0.139 4.139 13 C 0.011 3.989 14 O -0.229 6.229 15 C 0.011 3.989 16 C -0.132 4.132 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.167 4.167 20 N -0.229 5.229 21 C -0.150 4.150 22 H 0.087 0.913 23 H 0.224 0.776 24 H 0.178 0.822 25 H 0.179 0.821 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.888 -12.592 -0.636 18.757 hybrid contribution -0.257 1.871 0.029 1.889 sum 13.631 -10.721 -0.607 17.352 Atomic orbital electron populations 1.69840 1.07509 1.28940 1.50882 1.25818 0.96331 1.02152 0.97391 0.85467 0.79283 0.78157 0.79435 1.18829 1.20368 1.16569 1.19224 0.80936 0.95647 1.48055 0.89891 1.40766 1.04691 1.03890 1.71671 1.18830 0.92490 0.87647 0.99345 1.20981 0.90936 0.99071 1.07414 1.20911 1.01398 0.88811 1.02795 1.19671 0.87775 0.86585 1.04912 1.86095 1.34957 1.11759 1.90091 1.22548 0.92985 0.82847 1.00559 1.22692 0.99187 0.91571 0.99711 1.23013 1.01830 0.97034 0.95678 1.22814 0.99616 0.95676 0.98686 1.22906 0.98682 0.94208 1.00895 1.66927 1.09487 1.30738 1.15765 1.21616 0.98934 0.85901 1.08598 0.91345 0.77561 0.82227 0.82106 0.93640 0.93529 0.88087 0.90890 0.90983 0.88809 0.90423 0.90061 0.90166 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.64 13.97 21.64 0.30 -53.34 16 2 C -0.02 -0.96 5.50 84.85 0.47 -0.50 16 3 Si 0.95 38.85 27.74 68.60 1.90 40.76 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.24 -8.67 6.52 99.48 0.65 -8.02 16 7 C -0.31 -16.43 10.05 84.04 0.84 -15.59 16 8 H 0.08 4.86 5.94 -2.91 -0.02 4.84 16 9 N -0.60 -26.82 5.25 -183.96 -0.97 -27.79 16 10 C 0.13 5.63 6.64 38.42 0.26 5.88 16 11 C -0.15 -5.24 10.04 22.60 0.23 -5.01 16 12 C -0.12 -3.90 10.03 22.45 0.23 -3.68 16 13 C 0.19 7.34 7.49 84.81 0.64 7.98 16 14 O -0.32 -10.99 10.12 -90.58 -0.92 -11.90 16 15 C 0.09 2.58 5.13 71.98 0.37 2.95 16 16 C -0.11 -2.48 4.00 -10.27 -0.04 -2.52 16 17 C -0.14 -2.67 7.65 31.18 0.24 -2.43 16 18 C -0.13 -1.95 8.09 31.18 0.25 -1.70 16 19 C -0.13 -2.26 7.64 31.12 0.24 -2.03 16 20 N -0.51 -21.71 9.20 -308.21 -2.83 -24.54 16 21 C 0.01 0.57 10.47 84.84 0.89 1.46 16 22 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 23 H 0.39 15.49 5.77 -92.71 -0.54 14.96 16 24 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 25 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 26 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 27 H 0.05 1.49 7.83 -2.39 -0.02 1.47 16 28 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.07 1.53 7.92 -2.39 -0.02 1.51 16 30 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.13 6.53 5.97 -2.91 -0.02 6.52 16 Total: -1.00 -61.59 294.50 2.59 -59.01 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.50 Total: 32.99 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.60 Total: -15.18 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.50 Total: -105.67 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.92 Total: -11.90 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Total: -61.59 2.59 -59.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.230 kcal (2) G-P(sol) polarization free energy of solvation -61.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds