Wall clock time and date at job start Mon Mar 30 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86794 * 120.00433 * 2 1 4 4 H 1.48500 * 109.47521 * 270.00469 * 3 2 1 5 5 H 1.48501 * 109.47144 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47518 * 150.00267 * 3 2 1 7 7 C 1.40027 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99815 * 163.16793 * 7 2 1 9 9 C 1.41557 * 120.00221 * 343.17323 * 7 2 1 10 10 C 1.41185 * 120.99588 * 156.12524 * 9 7 2 11 11 C 1.36554 * 119.14568 * 180.02562 * 10 9 7 12 12 N 1.32095 * 121.27034 * 0.02562 * 11 10 9 13 13 C 1.32532 * 122.21527 * 359.69876 * 12 11 10 14 14 N 1.39078 * 119.66014 * 180.32142 * 13 12 11 15 15 C 1.47837 * 111.00266 * 121.11203 * 14 13 12 16 16 C 1.54902 * 104.80028 * 213.63737 * 15 14 13 17 17 C 1.55148 * 101.65041 * 37.06822 * 16 15 14 18 18 H 1.09004 * 110.70374 * 82.73349 * 17 16 15 19 19 C 1.53002 * 110.85623 * 205.89370 * 17 16 15 20 20 O 1.42897 * 109.47257 * 288.69067 * 19 17 16 21 21 C 1.47442 * 110.99815 * 0.26664 * 14 13 12 22 22 C 1.38754 * 120.68243 * 0.59228 * 13 12 11 23 23 H 0.97005 * 120.00070 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.42543 * 359.97438 * 10 9 7 25 25 H 1.08000 * 119.36678 * 179.97438 * 11 10 9 26 26 H 1.09005 * 110.37462 * 332.47057 * 15 14 13 27 27 H 1.08994 * 110.37814 * 94.80597 * 15 14 13 28 28 H 1.08997 * 110.99315 * 278.98262 * 16 15 14 29 29 H 1.08999 * 110.99542 * 155.15668 * 16 15 14 30 30 H 1.09007 * 109.46769 * 48.68553 * 19 17 16 31 31 H 1.08994 * 109.47362 * 168.68120 * 19 17 16 32 32 H 0.96698 * 113.99648 * 180.02562 * 20 19 17 33 33 H 1.08997 * 109.89306 * 242.66146 * 21 14 13 34 34 H 1.09006 * 109.88958 * 3.69400 * 21 14 13 35 35 H 1.07996 * 120.66516 * 179.70098 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6526 0.7001 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0528 -1.2326 -0.2714 9 6 1.3452 -2.4125 0.3538 10 6 1.8201 -3.6646 -0.0936 11 6 1.1515 -4.7982 0.2706 12 7 0.0724 -4.7437 1.0305 13 6 -0.4154 -3.5977 1.4837 14 7 -1.5515 -3.6026 2.2859 15 6 -1.2748 -2.9846 3.6001 16 6 -2.1643 -3.7652 4.5996 17 6 -2.0830 -5.2067 4.0317 18 1 -1.1761 -5.7053 4.3742 19 6 -3.3222 -6.0158 4.4198 20 8 -3.2793 -6.3121 5.8170 21 6 -2.0367 -4.9774 2.5064 22 6 0.1924 -2.3927 1.1615 23 1 -0.4850 0.8401 -0.0004 24 1 2.7003 -3.7249 -0.7164 25 1 1.5114 -5.7579 -0.0700 26 1 -0.2222 -3.0991 3.8592 27 1 -1.5512 -1.9303 3.5895 28 1 -3.1895 -3.3956 4.5810 29 1 -1.7523 -3.7189 5.6076 30 1 -4.2185 -5.4361 4.1987 31 1 -3.3417 -6.9457 3.8515 32 1 -4.0356 -6.8247 6.1337 33 1 -3.0351 -5.0905 2.0840 34 1 -1.3549 -5.6901 2.0423 35 1 -0.2082 -1.4587 1.5270 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166550808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:03 Heat of formation + Delta-G solvation = -14.418152 kcal Electronic energy + Delta-G solvation = -17900.470828 eV Core-core repulsion = 15091.021168 eV Total energy + Delta-G solvation = -2809.449660 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55993 -37.70872 -36.30010 -34.09563 -32.14144 -30.63704 -29.10865 -27.94353 -26.05999 -24.53021 -22.09582 -21.50351 -20.14671 -19.73336 -17.54631 -17.34699 -16.10150 -15.34572 -15.25236 -14.67883 -14.24477 -14.15826 -13.56082 -13.23646 -13.14123 -12.65295 -12.30151 -12.17994 -11.92009 -11.55210 -11.19921 -11.15353 -10.95178 -10.71838 -10.65785 -10.41648 -10.17856 -9.99984 -9.87508 -9.41339 -8.73214 -8.00152 -7.94218 -6.92057 -6.80057 -4.59153 2.72944 2.84541 3.02606 3.06669 3.23474 3.85930 4.18546 4.48406 4.66844 4.88644 4.96183 5.27202 5.48933 5.56167 5.61921 5.70381 5.81489 5.88792 5.97288 6.17819 6.26268 6.37751 6.46099 6.57833 6.73989 6.82433 6.93329 7.08511 7.22085 7.44868 7.56672 7.59980 7.74303 7.93464 8.25068 8.59735 8.76348 8.79170 9.58035 10.08332 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.005702 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.353993 B = 4909.574554 C = 5521.002305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.137 3.863 10 C -0.284 4.284 11 C 0.117 3.883 12 N -0.606 5.606 13 C 0.283 3.717 14 N -0.467 5.467 15 C 0.054 3.946 16 C -0.118 4.118 17 C -0.108 4.108 18 H 0.080 0.920 19 C 0.089 3.911 20 O -0.574 6.574 21 C 0.040 3.960 22 C -0.218 4.218 23 H 0.283 0.717 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.375 0.625 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -4.888 6.928 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.129 3.871 10 C -0.308 4.308 11 C -0.037 4.037 12 N -0.326 5.326 13 C 0.059 3.941 14 N -0.185 5.185 15 C -0.073 4.073 16 C -0.156 4.156 17 C -0.128 4.128 18 H 0.098 0.902 19 C 0.011 3.989 20 O -0.379 6.379 21 C -0.088 4.088 22 C -0.243 4.243 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.136 0.864 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.221 0.779 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.399 -4.876 6.852 9.994 hybrid contribution 0.746 0.865 -0.090 1.146 sum -4.653 -4.011 6.762 9.136 Atomic orbital electron populations 1.69802 1.07661 1.29558 1.33255 1.25979 0.94750 1.01501 0.92041 0.86290 0.80654 0.80350 0.79364 1.19334 1.19931 1.18340 1.19596 0.97842 0.90823 1.40340 0.90066 1.17710 0.90271 0.92223 0.86909 1.21553 1.05389 0.94031 1.09875 1.21325 0.91190 0.96719 0.94426 1.66897 1.16635 1.28258 1.20801 1.19492 0.89113 0.90183 0.95351 1.60882 1.27425 1.17370 1.12831 1.23026 0.98465 0.99311 0.86467 1.22734 1.00349 0.94133 0.98372 1.22372 0.97847 0.95866 0.96685 0.90200 1.22162 0.97567 0.97925 0.81243 1.86498 1.49486 1.77240 1.24706 1.22811 1.01495 0.91663 0.92811 1.21628 1.00981 0.96236 1.05429 0.90561 0.88239 0.86356 0.93160 0.90085 0.90968 0.90911 0.93436 0.93586 0.77925 0.91618 0.87785 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.97 10.92 55.55 0.61 -19.37 16 2 C 0.08 1.92 5.20 -17.35 -0.09 1.83 16 3 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.94 9.12 -37.65 -0.34 -12.28 16 8 H 0.08 2.03 7.90 -52.48 -0.41 1.61 16 9 C 0.14 3.69 5.60 -106.56 -0.60 3.09 16 10 C -0.28 -7.02 9.85 -39.07 -0.38 -7.40 16 11 C 0.12 2.72 11.10 -18.05 -0.20 2.52 16 12 N -0.61 -14.64 7.92 -12.82 -0.10 -14.74 16 13 C 0.28 6.98 6.16 -154.98 -0.95 6.02 16 14 N -0.47 -9.91 5.20 -170.06 -0.88 -10.79 16 15 C 0.05 0.99 6.08 -2.30 -0.01 0.98 16 16 C -0.12 -1.79 6.47 -24.59 -0.16 -1.95 16 17 C -0.11 -1.66 3.20 -88.79 -0.28 -1.95 16 18 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.09 1.09 6.34 37.16 0.24 1.32 16 20 O -0.57 -6.81 13.60 -35.23 -0.48 -7.29 16 21 C 0.04 0.73 6.36 -2.84 -0.02 0.71 16 22 C -0.22 -5.77 8.06 -38.43 -0.31 -6.08 16 23 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 24 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 25 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 26 H 0.05 0.99 7.78 -51.93 -0.40 0.59 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.37 2.53 9.12 45.56 0.42 2.95 16 33 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 34 H 0.10 2.08 5.90 -51.93 -0.31 1.78 16 35 H 0.13 3.51 6.12 -52.49 -0.32 3.19 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -29.66 289.68 -8.58 -38.23 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -3.94 Total: 9.59 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -3.12 Total: -13.20 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.38 Total: -44.90 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.48 Total: -7.29 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.66 -8.58 -38.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166550808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.816 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds