Wall clock time and date at job start Mon Mar 30 2020 18:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39004 * 120.00058 * 179.97438 * 12 11 10 14 14 C 1.39143 * 119.63284 * 359.73031 * 13 12 11 15 15 C 1.38410 * 119.02697 * 179.73532 * 14 13 12 16 16 C 1.38457 * 118.38473 * 0.55272 * 15 14 13 17 17 C 1.38408 * 119.66731 * 359.69589 * 16 15 14 18 18 N 1.31864 * 120.55912 * 0.02562 * 17 16 15 19 19 C 1.51238 * 107.10558 * 179.97438 * 17 16 15 20 20 O 1.43925 * 106.00247 * 17.73043 * 19 17 16 21 21 C 1.43956 * 104.91054 * 331.53667 * 20 19 17 22 22 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 30 30 H 1.08007 * 120.48862 * 0.02562 * 14 13 12 31 31 H 1.08001 * 120.81342 * 180.23917 * 15 14 13 32 32 H 1.08995 * 110.14885 * 136.86714 * 19 17 16 33 33 H 1.09002 * 110.14600 * 258.60137 * 19 17 16 34 34 H 1.09004 * 110.16705 * 147.52267 * 21 20 19 35 35 H 1.09002 * 110.16654 * 269.23165 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0399 -4.0178 0.0009 13 6 7.4065 -4.2718 -0.0006 14 6 8.3039 -3.2085 -0.0084 15 6 9.6619 -3.4758 -0.0042 16 6 10.0725 -4.7981 -0.0040 17 6 9.1271 -5.8090 -0.0016 18 7 7.8399 -5.5231 0.0000 19 6 9.8790 -7.1212 -0.0027 20 8 11.2205 -6.8102 0.4157 21 6 11.4341 -5.4504 -0.0056 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8880 26 1 3.6586 -3.1495 0.8919 27 1 5.9142 -2.1238 -0.8908 28 1 5.9156 -2.1217 0.8892 29 1 5.4096 -4.7551 0.0016 30 1 7.9461 -2.1895 -0.0129 31 1 10.3839 -2.6726 -0.0061 32 1 9.4192 -7.8180 0.6981 33 1 9.8881 -7.5479 -1.0057 34 1 12.0962 -4.9398 0.6937 35 1 11.8602 -5.4303 -1.0087 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427276.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:13 Heat of formation + Delta-G solvation = -27.883643 kcal Electronic energy + Delta-G solvation = -16875.367538 eV Core-core repulsion = 14065.333971 eV Total energy + Delta-G solvation = -2810.033567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.99607 -39.52229 -37.38663 -35.38951 -33.85054 -33.44001 -31.29972 -29.41479 -28.53435 -25.57956 -24.84679 -22.99038 -22.46145 -21.92748 -19.00537 -18.48072 -18.04875 -17.37481 -17.05310 -16.45796 -16.41466 -15.79277 -15.18757 -14.93003 -14.88702 -14.77806 -14.26803 -13.82636 -13.75851 -13.66746 -13.29346 -12.94639 -12.74222 -12.58677 -11.90380 -11.72879 -11.70573 -11.41415 -11.32916 -10.81329 -10.76513 -10.49817 -10.35086 -8.61875 -8.29450 -6.34733 0.14284 0.39414 1.38365 1.40548 1.52158 1.99503 2.37261 2.75686 2.93723 3.05395 3.06430 3.54794 3.94335 4.01680 4.05321 4.18545 4.37198 4.41818 4.44931 4.52620 4.61117 4.72401 4.77289 4.83719 4.88170 5.00014 5.03066 5.12850 5.42698 5.52619 5.55233 5.59218 5.65351 5.98763 6.27214 6.53989 6.74203 7.09703 7.30234 8.87558 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.059621 B = 0.003450 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.516611 B = 8113.354908 C = 8539.291952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.008 4.008 10 C -0.104 4.104 11 C 0.137 3.863 12 N -0.722 5.722 13 C 0.395 3.605 14 C -0.246 4.246 15 C -0.002 4.002 16 C -0.265 4.265 17 C 0.116 3.884 18 N -0.558 5.558 19 C 0.105 3.895 20 O -0.373 6.373 21 C 0.105 3.895 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.403 0.597 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.246 -7.528 -0.827 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.046 4.046 10 C -0.142 4.142 11 C 0.013 3.987 12 N -0.353 5.353 13 C 0.159 3.841 14 C -0.271 4.271 15 C -0.027 4.027 16 C -0.270 4.270 17 C -0.025 4.025 18 N -0.277 5.277 19 C 0.028 3.972 20 O -0.291 6.291 21 C 0.029 3.971 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.239 0.761 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 24.577 -8.012 -0.707 25.860 hybrid contribution -0.678 1.075 -0.108 1.275 sum 23.899 -6.937 -0.815 24.899 Atomic orbital electron populations 1.70087 1.08555 1.28246 1.52665 1.26108 0.95652 1.03893 0.94024 0.85589 0.79674 0.77681 0.79289 1.19068 1.21367 1.16164 1.21511 0.92347 0.93045 1.50544 0.95303 1.19438 0.93673 0.94141 0.97309 1.21469 0.92906 0.98349 1.01469 1.21482 0.94036 0.81116 1.02060 1.44732 1.02342 1.08762 1.79432 1.18500 0.86206 0.88673 0.90696 1.21662 0.93537 0.99804 1.12082 1.20907 0.95110 0.95561 0.91146 1.21858 0.98502 0.95303 1.11333 1.22293 0.88202 0.98323 0.93635 1.66013 1.17984 1.21307 1.22378 1.21701 0.80891 0.91681 1.02923 1.89098 1.29322 1.29377 1.81274 1.21665 0.92397 0.80836 1.02199 0.92517 0.95389 0.95469 0.92656 0.92712 0.90897 0.91054 0.76133 0.83050 0.81351 0.87076 0.87902 0.86917 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.47 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 3 Si 0.95 42.76 27.47 68.60 1.88 44.65 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 7 C -0.54 -30.32 9.66 25.60 0.25 -30.08 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 10 C -0.10 -3.70 5.27 30.59 0.16 -3.54 16 11 C 0.14 3.78 4.89 86.38 0.42 4.20 16 12 N -0.72 -19.98 5.73 -345.05 -1.98 -21.96 16 13 C 0.39 10.93 7.65 133.06 1.02 11.95 16 14 C -0.25 -5.60 9.33 22.53 0.21 -5.39 16 15 C 0.00 -0.04 10.16 22.36 0.23 0.19 16 16 C -0.26 -5.33 6.34 -19.69 -0.12 -5.46 16 17 C 0.12 2.81 7.50 42.76 0.32 3.13 16 18 N -0.56 -16.05 10.39 -180.57 -1.88 -17.92 16 19 C 0.11 1.95 7.63 71.41 0.54 2.49 16 20 O -0.37 -7.14 11.72 -148.98 -1.75 -8.88 16 21 C 0.11 1.57 7.63 71.32 0.54 2.12 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 24 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 1.87 7.91 -2.39 -0.02 1.85 16 28 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 29 H 0.40 11.20 8.60 -92.71 -0.80 10.40 16 30 H 0.15 2.98 6.70 -2.91 -0.02 2.96 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.15 294.71 0.98 -68.17 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.24 Total: 15.56 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.15 Total: -20.15 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -3.55 Total: -99.35 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.75 Total: -8.88 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.65 kcal Total: -69.15 0.98 -68.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427276.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.288 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds