Wall clock time and date at job start Mon Mar 30 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.46506 * 119.99707 * 269.99726 * 4 3 2 6 6 C 1.50703 * 109.46999 * 90.00343 * 5 4 3 7 7 H 1.07995 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99628 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99553 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00406 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47319 * 89.99689 * 10 8 6 12 12 H 1.48501 * 109.47407 * 210.00119 * 10 8 6 13 13 H 1.48505 * 109.47114 * 330.00355 * 10 8 6 14 14 C 1.34774 * 120.00293 * 89.99855 * 4 3 2 15 15 O 1.21271 * 120.00203 * 179.97438 * 14 4 3 16 16 C 1.50702 * 119.99670 * 0.02562 * 14 4 3 17 17 C 1.47204 * 115.55125 * 325.71743 * 16 14 4 18 18 N 2.50192 * 128.69280 * 241.32634 * 2 1 3 19 19 C 1.53001 * 117.50283 * 111.39215 * 16 14 4 20 20 C 1.53000 * 60.00105 * 107.48434 * 19 16 14 21 21 H 1.08996 * 117.50223 * 252.50972 * 20 19 16 22 22 C 1.53007 * 117.49373 * 107.48814 * 20 19 16 23 23 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 24 24 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 25 25 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 26 26 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 27 27 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 28 28 H 1.08999 * 109.46783 * 209.99736 * 5 4 3 29 29 H 1.09000 * 109.47380 * 330.00075 * 5 4 3 30 30 H 0.96999 * 119.99912 * 179.97438 * 9 8 6 31 31 H 1.08999 * 117.50036 * 214.97773 * 19 16 14 32 32 H 1.09010 * 117.49221 * 359.97247 * 19 16 14 33 33 H 1.09000 * 109.47134 * 351.38046 * 22 20 19 34 34 H 1.08998 * 109.46592 * 111.38246 * 22 20 19 35 35 H 1.09002 * 109.46704 * 231.37764 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 2.5486 1.8709 2.4256 6 6 1.9615 0.7598 3.2573 7 1 1.9202 -0.2451 2.8639 8 6 1.4772 1.0263 4.5204 9 7 0.9644 0.0567 5.2460 10 14 1.5494 2.7643 5.2010 11 1 0.3043 3.4891 4.8408 12 1 1.6818 2.7120 6.6792 13 1 2.7195 3.4737 4.6240 14 6 4.2456 0.8686 0.9927 15 8 5.0118 0.8935 1.9323 16 6 4.6987 0.3176 -0.3348 17 6 3.6691 -0.3899 -1.1134 18 7 2.8741 -0.9370 -1.7133 19 6 5.7461 1.1178 -1.1115 20 6 6.1365 -0.1965 -0.4325 21 1 6.7546 -0.1361 0.4632 22 6 6.3942 -1.4070 -1.3322 23 1 -0.5400 -0.9353 0.0045 24 1 -0.5400 0.9353 -0.0045 25 1 1.8500 -0.9353 0.0046 26 1 2.6252 1.4004 -0.9293 27 1 1.3582 2.1318 0.0846 28 1 3.4009 2.3048 2.9486 29 1 1.7935 2.6395 2.2610 30 1 0.6240 0.2440 6.1348 31 1 5.6730 1.1202 -2.1991 32 1 6.1071 2.0433 -0.6625 33 1 6.1036 -1.1678 -2.3552 34 1 7.4540 -1.6604 -1.3053 35 1 5.8087 -2.2549 -0.9769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451964756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:36 Heat of formation + Delta-G solvation = 66.028149 kcal Electronic energy + Delta-G solvation = -18311.272755 eV Core-core repulsion = 15505.311509 eV Total energy + Delta-G solvation = -2805.961246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34273 -37.39971 -36.72627 -34.92273 -32.95155 -32.09835 -29.46169 -28.18287 -25.69973 -24.87286 -22.32985 -21.28765 -20.06981 -19.42365 -17.39494 -16.86494 -16.34473 -15.59645 -14.81795 -14.69265 -14.00502 -13.92904 -13.75754 -13.52454 -13.16349 -13.00538 -12.72597 -12.38852 -12.19233 -12.03982 -11.73381 -11.61047 -11.48552 -11.05540 -10.72912 -10.57912 -10.46606 -10.21840 -10.07771 -9.58642 -9.23480 -8.88722 -8.57909 -7.87105 -6.07162 -4.05765 2.34789 2.61041 2.84684 3.13796 3.26487 3.34646 3.37363 3.60289 3.67612 3.92628 4.39535 4.50310 4.67341 4.81308 5.15407 5.21119 5.27839 5.36819 5.48896 5.50675 5.58386 5.60562 5.67064 5.90653 5.97774 6.15545 6.32950 6.58470 6.88496 7.01879 7.11957 7.31234 7.56576 7.58883 8.04955 8.45235 8.73061 8.98399 9.51981 11.06263 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.007767 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.895514 B = 3603.981274 C = 4181.870115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.165 4.165 3 C 0.136 3.864 4 N -0.580 5.580 5 C 0.217 3.783 6 C -0.524 4.524 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.554 3.446 15 O -0.521 6.521 16 C -0.086 4.086 17 C 0.243 3.757 18 N -0.410 5.410 19 C -0.123 4.123 20 C -0.091 4.091 21 H 0.136 0.864 22 C -0.129 4.129 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.027 0.973 30 H 0.264 0.736 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 3.196 -14.193 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.013 3.987 4 N -0.310 5.310 5 C 0.097 3.903 6 C -0.563 4.563 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.338 3.662 15 O -0.397 6.397 16 C -0.093 4.093 17 C -0.073 4.073 18 N -0.087 5.087 19 C -0.162 4.162 20 C -0.111 4.111 21 H 0.154 0.846 22 C -0.186 4.186 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.970 2.369 -14.385 16.159 hybrid contribution -0.186 0.891 0.845 1.242 sum 6.784 3.261 -13.540 15.492 Atomic orbital electron populations 1.23603 0.95656 1.01309 1.00232 1.23458 0.96705 0.98310 0.99966 1.20745 0.92709 0.96503 0.88788 1.47884 1.09853 1.60255 1.12979 1.19771 0.95667 0.95012 0.79888 1.21286 1.39312 0.96006 0.99665 0.90565 1.24842 0.94696 0.96941 0.96481 1.69896 1.40736 1.31908 1.10950 0.86905 0.78936 0.85387 0.78858 1.20167 1.20928 1.18796 1.18675 0.82637 0.78527 0.86389 1.90704 1.53632 1.55976 1.39403 1.18699 0.88368 1.06209 0.96039 1.26999 0.93361 0.93090 0.93827 1.81251 1.08326 1.09833 1.09249 1.23365 0.96464 0.96928 0.99460 1.22634 0.91123 0.95108 1.02223 0.84575 1.21479 1.02653 0.96264 0.98223 0.88859 0.88852 0.87398 0.90890 0.89681 0.93713 0.95493 0.92603 0.87133 0.86373 0.92288 0.90821 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 14.32 29.01 0.42 -2.57 16 2 C -0.17 -3.08 7.38 -36.03 -0.27 -3.35 16 3 C 0.14 2.35 5.42 -5.19 -0.03 2.32 16 4 N -0.58 -11.89 2.44 -176.43 -0.43 -12.32 16 5 C 0.22 5.20 4.27 -5.19 -0.02 5.18 16 6 C -0.52 -14.97 9.94 -34.44 -0.34 -15.32 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 10 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.55 10.81 7.29 -10.99 -0.08 10.73 16 15 O -0.52 -11.87 15.84 5.57 0.09 -11.78 16 16 C -0.09 -1.24 2.00 -158.44 -0.32 -1.56 16 17 C 0.24 3.69 9.06 -20.75 -0.19 3.50 16 18 N -0.41 -6.67 15.54 42.16 0.66 -6.02 16 19 C -0.12 -1.23 9.56 -26.73 -0.26 -1.48 16 20 C -0.09 -1.04 5.92 -90.61 -0.54 -1.58 16 21 H 0.14 1.64 7.67 -51.93 -0.40 1.24 16 22 C -0.13 -1.22 9.20 37.16 0.34 -0.88 16 23 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.09 1.49 7.84 -52.49 -0.41 1.07 16 25 H 0.11 2.18 5.57 -52.49 -0.29 1.89 16 26 H 0.07 1.08 5.56 -51.93 -0.29 0.79 16 27 H 0.08 1.36 7.54 -51.93 -0.39 0.96 16 28 H 0.04 1.13 6.48 -51.93 -0.34 0.79 16 29 H 0.03 0.61 7.32 -51.93 -0.38 0.23 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.11 0.84 8.05 -51.93 -0.42 0.43 16 32 H 0.12 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -33.28 298.59 -5.07 -38.34 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.61 Total: 0.57 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.38 Total: -2.98 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 1.00 Total: -45.27 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.28 -5.07 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.369 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds