Wall clock time and date at job start Mon Mar 30 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.46506 * 119.99707 * 269.99726 * 4 3 2 6 6 C 1.50703 * 109.46999 * 90.00343 * 5 4 3 7 7 H 1.07995 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99628 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99553 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00406 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47319 * 89.99689 * 10 8 6 12 12 H 1.48501 * 109.47407 * 210.00119 * 10 8 6 13 13 H 1.48505 * 109.47114 * 330.00355 * 10 8 6 14 14 C 1.34774 * 120.00293 * 89.99855 * 4 3 2 15 15 O 1.21271 * 120.00203 * 179.97438 * 14 4 3 16 16 C 1.50702 * 119.99670 * 0.02562 * 14 4 3 17 17 C 1.47204 * 115.55125 * 325.71743 * 16 14 4 18 18 N 2.50192 * 128.69280 * 241.32634 * 2 1 3 19 19 C 1.53001 * 117.50283 * 111.39215 * 16 14 4 20 20 C 1.53000 * 60.00105 * 107.48434 * 19 16 14 21 21 H 1.08996 * 117.50223 * 252.50972 * 20 19 16 22 22 C 1.53007 * 117.49373 * 107.48814 * 20 19 16 23 23 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 24 24 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 25 25 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 26 26 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 27 27 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 28 28 H 1.08999 * 109.46783 * 209.99736 * 5 4 3 29 29 H 1.09000 * 109.47380 * 330.00075 * 5 4 3 30 30 H 0.96999 * 119.99912 * 179.97438 * 9 8 6 31 31 H 1.08999 * 117.50036 * 214.97773 * 19 16 14 32 32 H 1.09010 * 117.49221 * 359.97247 * 19 16 14 33 33 H 1.09000 * 109.47134 * 351.38046 * 22 20 19 34 34 H 1.08998 * 109.46592 * 111.38246 * 22 20 19 35 35 H 1.09002 * 109.46704 * 231.37764 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 2.5486 1.8709 2.4256 6 6 1.9615 0.7598 3.2573 7 1 1.9202 -0.2451 2.8639 8 6 1.4772 1.0263 4.5204 9 7 0.9644 0.0567 5.2460 10 14 1.5494 2.7643 5.2010 11 1 0.3043 3.4891 4.8408 12 1 1.6818 2.7120 6.6792 13 1 2.7195 3.4737 4.6240 14 6 4.2456 0.8686 0.9927 15 8 5.0118 0.8935 1.9323 16 6 4.6987 0.3176 -0.3348 17 6 3.6691 -0.3899 -1.1134 18 7 2.8741 -0.9370 -1.7133 19 6 5.7461 1.1178 -1.1115 20 6 6.1365 -0.1965 -0.4325 21 1 6.7546 -0.1361 0.4632 22 6 6.3942 -1.4070 -1.3322 23 1 -0.5400 -0.9353 0.0045 24 1 -0.5400 0.9353 -0.0045 25 1 1.8500 -0.9353 0.0046 26 1 2.6252 1.4004 -0.9293 27 1 1.3582 2.1318 0.0846 28 1 3.4009 2.3048 2.9486 29 1 1.7935 2.6395 2.2610 30 1 0.6240 0.2440 6.1348 31 1 5.6730 1.1202 -2.1991 32 1 6.1071 2.0433 -0.6625 33 1 6.1036 -1.1678 -2.3552 34 1 7.4540 -1.6604 -1.3053 35 1 5.8087 -2.2549 -0.9769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451964756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:35 Heat of formation + Delta-G solvation = 44.389754 kcal Electronic energy + Delta-G solvation = -18312.211066 eV Core-core repulsion = 15505.311509 eV Total energy + Delta-G solvation = -2806.899557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.67694 -38.69852 -38.09407 -36.30634 -34.91217 -33.82047 -30.89693 -29.54705 -27.10640 -26.26624 -24.05861 -22.21841 -21.57152 -20.84289 -19.08298 -18.76376 -17.71206 -16.90518 -16.57389 -16.05680 -15.64416 -15.42611 -14.87935 -14.74573 -14.53627 -14.35565 -14.18971 -13.76060 -13.66986 -13.43895 -13.07494 -12.92118 -12.85408 -12.47244 -12.35582 -12.18943 -11.94804 -11.71158 -11.53616 -11.17714 -10.80034 -10.76946 -10.33006 -9.57756 -8.30397 -6.35335 1.12285 1.29201 1.34368 1.38542 1.48802 1.55166 1.76937 2.21660 2.33596 2.56632 2.87570 3.03130 3.33482 3.61264 3.79005 3.91660 4.09370 4.21073 4.31678 4.44338 4.60855 4.73294 4.78089 4.85362 4.90325 4.92272 4.95947 5.16576 5.35032 5.39330 5.48614 5.61879 5.82942 6.23995 6.39096 6.49564 6.66610 7.13753 7.30183 8.86865 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.007767 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.895514 B = 3603.981274 C = 4181.870115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.138 3.862 4 N -0.590 5.590 5 C 0.224 3.776 6 C -0.528 4.528 7 H 0.024 0.976 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.947 3.053 11 H -0.255 1.255 12 H -0.284 1.284 13 H -0.247 1.247 14 C 0.548 3.452 15 O -0.564 6.564 16 C -0.113 4.113 17 C 0.255 3.745 18 N -0.433 5.433 19 C -0.084 4.084 20 C -0.087 4.087 21 H 0.127 0.873 22 C -0.126 4.126 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 5.572 -15.998 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.318 5.318 5 C 0.102 3.898 6 C -0.567 4.567 7 H 0.043 0.957 8 C -0.188 4.188 9 N -0.589 5.589 10 Si 0.770 3.230 11 H -0.179 1.179 12 H -0.210 1.210 13 H -0.170 1.170 14 C 0.335 3.665 15 O -0.443 6.443 16 C -0.120 4.120 17 C -0.060 4.060 18 N -0.110 5.110 19 C -0.122 4.122 20 C -0.107 4.107 21 H 0.145 0.855 22 C -0.183 4.183 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.868 4.740 -16.246 18.663 hybrid contribution -0.456 0.009 1.403 1.476 sum 7.411 4.749 -14.843 17.257 Atomic orbital electron populations 1.23836 0.95524 1.02389 0.98996 1.23491 0.97220 0.98351 1.01170 1.20933 0.92778 0.96085 0.88696 1.47933 1.10927 1.60400 1.12584 1.19469 0.95369 0.93819 0.81111 1.21480 1.39392 0.95211 1.00584 0.95716 1.25865 0.94101 1.02111 0.96755 1.70071 1.42364 1.34858 1.11597 0.85718 0.80300 0.79261 0.77750 1.17932 1.21005 1.17021 1.19436 0.81868 0.77363 0.87882 1.90668 1.54691 1.57530 1.41399 1.18579 0.89485 1.09457 0.94501 1.27066 0.93008 0.92538 0.93377 1.81262 1.08613 1.10653 1.10432 1.23666 0.91211 0.96350 1.00942 1.22805 0.88067 0.97193 1.02651 0.85523 1.21508 1.03910 0.94601 0.98274 0.88863 0.86761 0.89656 0.88110 0.87927 0.94780 0.93096 0.92442 0.83681 0.85131 0.90886 0.88462 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.90 14.32 67.78 0.97 -4.93 16 2 C -0.18 -6.85 7.38 25.64 0.19 -6.66 16 3 C 0.14 4.55 5.42 85.63 0.46 5.01 16 4 N -0.59 -23.89 2.44 -830.49 -2.03 -25.92 16 5 C 0.22 10.64 4.27 85.63 0.37 11.01 16 6 C -0.53 -30.96 9.94 25.60 0.25 -30.71 16 7 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 8 C 0.01 0.54 5.47 84.65 0.46 1.00 16 9 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 10 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 11 H -0.25 -10.86 7.11 99.48 0.71 -10.16 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 14 C 0.55 21.31 7.29 87.66 0.64 21.94 16 15 O -0.56 -26.09 15.84 -3.00 -0.05 -26.14 16 16 C -0.11 -3.10 2.00 -54.73 -0.11 -3.21 16 17 C 0.26 7.49 9.06 89.44 0.81 8.30 16 18 N -0.43 -13.81 15.54 20.01 0.31 -13.50 16 19 C -0.08 -1.36 9.56 30.59 0.29 -1.06 16 20 C -0.09 -1.82 5.92 -10.79 -0.06 -1.88 16 21 H 0.13 2.92 7.67 -2.39 -0.02 2.90 16 22 C -0.13 -2.09 9.20 71.98 0.66 -1.43 16 23 H 0.09 3.17 8.06 -2.91 -0.02 3.15 16 24 H 0.11 3.45 7.84 -2.91 -0.02 3.43 16 25 H 0.09 3.57 5.57 -2.91 -0.02 3.55 16 26 H 0.10 2.75 5.56 -2.39 -0.01 2.74 16 27 H 0.10 3.01 7.54 -2.39 -0.02 2.99 16 28 H 0.03 1.70 6.48 -2.39 -0.02 1.68 16 29 H 0.05 2.18 7.32 -2.39 -0.02 2.16 16 30 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.15 1.43 8.05 -2.39 -0.02 1.41 16 32 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.02 7.90 -2.39 -0.02 1.00 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.02 298.59 6.39 -69.63 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.03 Total: 13.13 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.94 Total: -2.63 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -1.42 Total: -99.57 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -76.02 6.39 -69.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.021 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds