Wall clock time and date at job start Mon Mar 30 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99937 * 2 1 4 4 N 1.46501 * 109.47303 * 121.32986 * 3 2 1 5 5 C 1.46494 * 120.00181 * 270.16436 * 4 3 2 6 6 C 1.50699 * 109.46905 * 90.00106 * 5 4 3 7 7 H 1.07994 * 120.00159 * 0.02562 * 6 5 4 8 8 C 1.37889 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99470 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99814 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47165 * 90.00287 * 10 8 6 12 12 H 1.48497 * 109.46658 * 210.00211 * 10 8 6 13 13 H 1.48498 * 109.47027 * 329.99667 * 10 8 6 14 14 C 1.34775 * 119.99601 * 90.16358 * 4 3 2 15 15 O 1.21285 * 119.99785 * 176.82998 * 14 4 3 16 16 C 1.50699 * 120.00341 * 356.83737 * 14 4 3 17 17 C 1.47191 * 115.55512 * 59.99451 * 16 14 4 18 18 N 4.40686 * 139.24126 * 307.53772 * 2 1 3 19 19 C 1.53004 * 117.49190 * 274.28741 * 16 14 4 20 20 C 1.52997 * 59.99988 * 252.51019 * 19 16 14 21 21 H 1.09001 * 117.49434 * 107.49329 * 20 19 16 22 22 C 1.53000 * 117.49951 * 252.50824 * 20 19 16 23 23 H 1.08000 * 120.00074 * 355.24809 * 1 2 3 24 24 H 1.08000 * 120.00055 * 175.23713 * 1 2 3 25 25 H 1.08005 * 119.99861 * 179.71007 * 2 1 3 26 26 H 1.08999 * 109.46868 * 241.32925 * 3 2 1 27 27 H 1.09001 * 109.47140 * 1.32606 * 3 2 1 28 28 H 1.09003 * 109.47013 * 209.99930 * 5 4 3 29 29 H 1.09002 * 109.47205 * 330.00349 * 5 4 3 30 30 H 0.97003 * 119.99431 * 179.97438 * 9 8 6 31 31 H 1.08992 * 117.50365 * 0.02562 * 19 16 14 32 32 H 1.09001 * 117.49552 * 145.01981 * 19 16 14 33 33 H 1.09007 * 109.46740 * 128.62353 * 22 20 19 34 34 H 1.08997 * 109.47731 * 248.62362 * 22 20 19 35 35 H 1.09001 * 109.47395 * 8.63020 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9296 1.3690 1.1798 5 6 2.4231 1.9394 2.4304 6 6 1.7960 0.8501 3.2617 7 1 1.7770 -0.1656 2.8953 8 6 1.2463 1.1502 4.4901 9 7 0.6986 0.1996 5.2153 10 14 1.2796 2.9070 5.1242 11 1 0.0534 3.6169 4.6799 12 1 1.3355 2.8965 6.6081 13 1 2.4767 3.6038 4.5887 14 6 4.1925 0.9028 1.1146 15 8 4.9280 1.0078 2.0733 16 6 4.6910 0.2514 -0.1496 17 6 4.6667 1.0988 -1.3528 18 7 4.6481 1.7530 -2.2814 19 6 4.4135 -1.2423 -0.3312 20 6 5.8318 -0.7600 -0.0207 21 1 6.2219 -0.9541 0.9785 22 6 6.8599 -0.8134 -1.1526 23 1 -0.5400 0.9321 0.0775 24 1 -0.5400 -0.9321 -0.0777 25 1 1.8500 -0.9354 0.0047 26 1 2.6721 1.3732 -0.9017 27 1 1.3554 2.1334 0.0238 28 1 3.2467 2.3903 2.9840 29 1 1.6761 2.7009 2.2061 30 1 0.3122 0.4106 6.0796 31 1 3.8701 -1.7536 0.4633 32 1 4.2127 -1.5976 -1.3420 33 1 7.3453 0.1579 -1.2485 34 1 7.6084 -1.5731 -0.9281 35 1 6.3582 -1.0627 -2.0876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451964758.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:44 Heat of formation + Delta-G solvation = 49.583763 kcal Electronic energy + Delta-G solvation = -18211.609292 eV Core-core repulsion = 15404.934964 eV Total energy + Delta-G solvation = -2806.674328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25289 -37.49200 -36.13512 -35.41956 -33.04537 -32.13210 -29.47558 -28.17275 -25.70794 -24.88221 -22.50862 -21.29894 -20.08877 -19.19132 -17.45796 -16.83790 -16.28772 -15.72592 -14.83036 -14.54078 -14.30024 -13.82936 -13.64009 -13.53662 -13.24021 -12.85571 -12.76822 -12.60435 -12.32935 -12.15240 -11.78053 -11.63908 -11.45079 -11.27431 -10.88404 -10.58198 -10.46025 -10.18299 -10.13736 -9.59311 -9.25102 -8.98624 -8.60260 -7.87437 -6.10372 -4.08694 2.37255 2.53520 2.64493 3.03290 3.25475 3.33842 3.38052 3.55157 3.64937 3.95296 4.38103 4.52877 4.63239 4.78392 5.14735 5.20671 5.25713 5.37016 5.44860 5.57275 5.58780 5.59560 5.74995 5.88974 5.97971 6.15798 6.27309 6.57484 6.89056 6.96851 7.04871 7.27294 7.42647 7.56484 8.03713 8.42412 8.71564 8.94100 9.49639 11.02664 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.007345 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.627798 B = 3811.306520 C = 4129.206623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.163 4.163 3 C 0.137 3.863 4 N -0.578 5.578 5 C 0.215 3.785 6 C -0.523 4.523 7 H 0.079 0.921 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.554 3.446 15 O -0.520 6.520 16 C -0.085 4.085 17 C 0.256 3.744 18 N -0.425 5.425 19 C -0.126 4.126 20 C -0.093 4.093 21 H 0.135 0.865 22 C -0.128 4.128 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.264 0.736 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -2.622 -12.362 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.013 3.987 4 N -0.308 5.308 5 C 0.095 3.905 6 C -0.562 4.562 7 H 0.097 0.903 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.697 3.303 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.337 3.663 15 O -0.396 6.396 16 C -0.093 4.093 17 C -0.061 4.061 18 N -0.101 5.101 19 C -0.165 4.165 20 C -0.112 4.112 21 H 0.153 0.847 22 C -0.185 4.185 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.576 -1.542 -13.055 14.280 hybrid contribution -0.373 0.659 0.887 1.166 sum 5.203 -0.883 -12.169 13.264 Atomic orbital electron populations 1.23697 0.95759 1.01623 0.99573 1.23114 0.96291 0.98223 1.00539 1.20744 0.93586 0.96572 0.87755 1.47905 1.10577 1.59184 1.13141 1.19792 0.94985 0.94710 0.81051 1.21263 1.37037 0.95824 1.02069 0.90318 1.24818 0.94742 0.96949 0.96331 1.69882 1.38702 1.32327 1.12493 0.86941 0.78995 0.85673 0.78737 1.20154 1.20910 1.18840 1.18646 0.82340 0.79050 0.86223 1.90707 1.55691 1.56048 1.37111 1.18648 1.10733 0.90823 0.89062 1.27163 0.92565 0.93475 0.92861 1.81253 1.09402 1.08634 1.10826 1.23454 0.98899 0.89398 1.04743 1.22637 0.89686 0.96218 1.02707 0.84747 1.21469 0.98120 1.02716 0.96215 0.88674 0.88729 0.87378 0.91203 0.90056 0.93764 0.95533 0.92587 0.86034 0.87051 0.91803 0.90776 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 14.32 29.01 0.42 -2.13 16 2 C -0.16 -2.56 9.82 -36.03 -0.35 -2.91 16 3 C 0.14 2.26 5.66 -5.19 -0.03 2.23 16 4 N -0.58 -11.64 2.44 -176.44 -0.43 -12.07 16 5 C 0.21 5.10 4.30 -5.20 -0.02 5.08 16 6 C -0.52 -14.35 9.94 -34.44 -0.34 -14.69 16 7 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 10 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.55 10.82 7.00 -10.99 -0.08 10.75 16 15 O -0.52 -12.01 16.13 5.55 0.09 -11.92 16 16 C -0.09 -1.24 1.70 -158.45 -0.27 -1.51 16 17 C 0.26 3.77 11.30 -20.76 -0.23 3.54 16 18 N -0.43 -6.70 18.47 42.15 0.78 -5.93 16 19 C -0.13 -1.42 8.41 -26.73 -0.22 -1.64 16 20 C -0.09 -1.08 5.92 -90.62 -0.54 -1.62 16 21 H 0.13 1.67 7.90 -51.93 -0.41 1.26 16 22 C -0.13 -1.19 9.19 37.16 0.34 -0.85 16 23 H 0.09 1.40 7.84 -52.49 -0.41 0.99 16 24 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16 25 H 0.11 1.59 6.49 -52.48 -0.34 1.25 16 26 H 0.07 1.06 4.58 -51.93 -0.24 0.82 16 27 H 0.08 1.29 7.54 -51.93 -0.39 0.90 16 28 H 0.04 1.13 6.44 -51.93 -0.33 0.80 16 29 H 0.03 0.60 7.32 -51.93 -0.38 0.22 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.12 1.43 7.79 -51.93 -0.40 1.02 16 32 H 0.11 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -32.14 304.79 -4.89 -37.03 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.60 Total: -0.32 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.43 Total: -1.76 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 1.12 Total: -44.04 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.14 -4.89 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964758.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.613 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds