Wall clock time and date at job start Mon Mar 30 2020 18:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99740 * 2 1 4 4 N 1.46500 * 109.47452 * 125.27307 * 3 2 1 5 5 C 1.46496 * 119.99757 * 85.17846 * 4 3 2 6 6 C 1.50704 * 109.47457 * 90.46718 * 5 4 3 7 7 H 1.08007 * 119.99372 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00414 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99731 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47271 * 90.00173 * 10 8 6 12 12 H 1.48505 * 109.46803 * 209.99871 * 10 8 6 13 13 H 1.48494 * 109.47352 * 329.99558 * 10 8 6 14 14 C 1.34777 * 119.99857 * 265.17988 * 4 3 2 15 15 O 1.21279 * 120.00106 * 4.62136 * 14 4 3 16 16 C 1.50697 * 119.99629 * 184.62604 * 14 4 3 17 17 C 1.47200 * 115.55015 * 298.40877 * 16 14 4 18 18 N 5.42640 * 126.67131 * 93.08089 * 2 1 3 19 19 C 1.52997 * 117.50247 * 84.12120 * 16 14 4 20 20 C 1.52997 * 117.49800 * 152.74700 * 16 14 4 21 21 H 1.09008 * 117.50132 * 144.99694 * 20 16 14 22 22 C 1.53001 * 117.50051 * 359.97438 * 20 16 14 23 23 H 1.08007 * 119.99731 * 179.72799 * 1 2 3 24 24 H 1.07997 * 120.00382 * 359.73087 * 1 2 3 25 25 H 1.07997 * 120.00382 * 180.26913 * 2 1 3 26 26 H 1.09003 * 109.47191 * 245.27227 * 3 2 1 27 27 H 1.09000 * 109.47424 * 5.26941 * 3 2 1 28 28 H 1.09004 * 109.47173 * 210.46522 * 5 4 3 29 29 H 1.08998 * 109.47528 * 330.46374 * 5 4 3 30 30 H 0.96998 * 120.00479 * 179.97438 * 9 8 6 31 31 H 1.09000 * 117.50387 * 214.97336 * 19 16 14 32 32 H 1.09002 * 117.49952 * 359.97438 * 19 16 14 33 33 H 1.09002 * 109.46704 * 60.00198 * 22 20 16 34 34 H 1.08998 * 109.47183 * 180.02562 * 22 20 16 35 35 H 1.08999 * 109.47071 * 300.00674 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9984 1.3294 1.1276 5 6 4.3272 0.7281 0.9903 6 6 5.3011 1.7684 0.4999 7 1 4.9637 2.7765 0.3091 8 6 6.6226 1.4332 0.2947 9 7 7.0335 0.2058 0.5275 10 14 7.8299 2.7228 -0.3125 11 1 8.4437 3.4129 0.8504 12 1 8.8924 2.0667 -1.1161 13 1 7.1133 3.7140 -1.1547 14 6 2.6359 1.9048 2.2912 15 8 1.5082 2.3277 2.4332 16 6 3.6321 2.0228 3.4158 17 6 4.1506 0.7491 3.9409 18 7 4.5507 -0.2339 4.3461 19 6 4.5866 3.2182 3.3916 20 6 3.4442 3.1718 4.4083 21 1 3.7046 2.9847 5.4502 22 6 2.2596 4.1135 4.1829 23 1 -0.5400 -0.9354 -0.0044 24 1 -0.5400 0.9352 0.0044 25 1 1.8500 -0.9352 -0.0044 26 1 2.6174 1.4049 -0.9335 27 1 1.3589 2.1315 0.0944 28 1 4.6566 0.3497 1.9581 29 1 4.2823 -0.0933 0.2753 30 1 7.9632 -0.0302 0.3828 31 1 5.5988 3.0618 3.7645 32 1 4.4943 3.9193 2.5621 33 1 1.3307 3.5446 4.2217 34 1 2.2504 4.8783 4.9595 35 1 2.3540 4.5888 3.2065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451964759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:48 Heat of formation + Delta-G solvation = 42.352316 kcal Electronic energy + Delta-G solvation = -18404.727086 eV Core-core repulsion = 15597.739179 eV Total energy + Delta-G solvation = -2806.987907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.04562 -37.16780 -35.78393 -34.95844 -33.45790 -32.20239 -28.71043 -27.53010 -26.20745 -23.91345 -23.07703 -20.85309 -19.87590 -19.22562 -17.53951 -16.58019 -15.87433 -15.41894 -14.60612 -14.47058 -14.06497 -13.86733 -13.38513 -13.14862 -12.84999 -12.64033 -12.39707 -12.27976 -12.08292 -11.95779 -11.62494 -11.27998 -11.17001 -11.06044 -10.84922 -10.72402 -10.24043 -10.11066 -9.78544 -9.74406 -9.28698 -8.91408 -8.57676 -7.85477 -6.19847 -4.27997 2.50883 2.88019 3.02637 3.19416 3.26065 3.28221 3.31503 3.78692 4.25168 4.27276 4.30484 4.97326 5.01841 5.14465 5.23110 5.30335 5.50517 5.52831 5.71600 5.91070 6.09380 6.13105 6.16708 6.21610 6.27171 6.32574 6.58074 6.70604 6.90407 7.07487 7.14329 7.40623 7.71716 7.98447 8.02558 8.17452 8.70112 8.84640 9.38979 10.87085 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.009933 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.670540 B = 2818.283670 C = 3594.544460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.144 3.856 4 N -0.583 5.583 5 C 0.231 3.769 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.887 5.887 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.562 3.438 15 O -0.551 6.551 16 C -0.065 4.065 17 C 0.257 3.743 18 N -0.426 5.426 19 C -0.103 4.103 20 C -0.107 4.107 21 H 0.113 0.887 22 C -0.117 4.117 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.265 0.735 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 5.901 2.418 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.312 5.312 5 C 0.111 3.889 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.347 3.653 15 O -0.430 6.430 16 C -0.072 4.072 17 C -0.060 4.060 18 N -0.101 5.101 19 C -0.141 4.141 20 C -0.127 4.127 21 H 0.131 0.869 22 C -0.174 4.174 23 H 0.110 0.890 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.046 4.471 3.062 8.889 hybrid contribution 0.949 0.565 -0.704 1.310 sum -6.097 5.036 2.358 8.251 Atomic orbital electron populations 1.23742 0.95789 1.01408 1.01593 1.23394 0.96161 0.99431 0.98910 1.20474 0.92141 0.95061 0.90217 1.48204 1.17106 1.55059 1.10793 1.19627 0.76583 0.94085 0.98631 1.21373 0.93265 0.96804 1.45853 0.91817 1.24939 0.98233 0.95404 0.95173 1.69932 1.16934 1.17879 1.47762 0.86558 0.80819 0.81486 0.79018 1.20395 1.21163 1.19674 1.18768 0.86151 0.78003 0.82365 1.90602 1.19944 1.50632 1.81825 1.18145 1.03964 0.84539 1.00552 1.27039 0.93148 0.93120 0.92696 1.81187 1.08637 1.10101 1.10212 1.23244 0.95211 0.94988 1.00686 1.22648 0.99193 0.95210 0.95654 0.86851 1.21424 0.97151 0.97480 1.01302 0.88979 0.88538 0.87527 0.89352 0.90060 0.94080 0.94558 0.92492 0.87271 0.86569 0.90120 0.92673 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 29.02 0.42 -2.26 16 2 C -0.16 -2.62 9.84 -36.02 -0.35 -2.97 16 3 C 0.14 2.55 5.86 -5.19 -0.03 2.52 16 4 N -0.58 -11.88 2.44 -176.43 -0.43 -12.31 16 5 C 0.23 5.43 4.93 -5.19 -0.03 5.40 16 6 C -0.53 -13.14 8.92 -34.44 -0.31 -13.45 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 10 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 14 C 0.56 11.10 6.79 -10.99 -0.07 11.02 16 15 O -0.55 -11.05 13.51 5.56 0.08 -10.98 16 16 C -0.07 -1.19 1.68 -158.45 -0.27 -1.45 16 17 C 0.26 5.24 12.35 -20.76 -0.26 4.98 16 18 N -0.43 -9.38 18.49 42.16 0.78 -8.60 16 19 C -0.10 -1.62 9.09 -26.73 -0.24 -1.87 16 20 C -0.11 -1.52 6.08 -90.62 -0.55 -2.07 16 21 H 0.11 1.39 8.14 -51.92 -0.42 0.97 16 22 C -0.12 -1.54 8.53 37.16 0.32 -1.22 16 23 H 0.09 1.15 8.06 -52.48 -0.42 0.73 16 24 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 25 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 27 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 28 H 0.04 1.04 4.69 -51.93 -0.24 0.80 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.12 1.81 8.05 -51.93 -0.42 1.39 16 33 H 0.08 1.19 6.79 -51.93 -0.35 0.83 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.83 7.78 -51.93 -0.40 0.42 16 LS Contribution 307.42 15.07 4.63 4.63 Total: -1.00 -28.54 307.42 -5.39 -33.93 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.69 Total: 2.03 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.47 Total: 0.23 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 1.09 Total: -44.66 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.54 -5.39 -33.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.282 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds