Wall clock time and date at job start Mon Mar 30 2020 18:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99740 * 2 1 4 4 N 1.46500 * 109.47452 * 125.27307 * 3 2 1 5 5 C 1.46496 * 119.99757 * 85.17846 * 4 3 2 6 6 C 1.50704 * 109.47457 * 90.46718 * 5 4 3 7 7 H 1.08007 * 119.99372 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00414 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99731 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47271 * 90.00173 * 10 8 6 12 12 H 1.48505 * 109.46803 * 209.99871 * 10 8 6 13 13 H 1.48494 * 109.47352 * 329.99558 * 10 8 6 14 14 C 1.34777 * 119.99857 * 265.17988 * 4 3 2 15 15 O 1.21279 * 120.00106 * 4.62136 * 14 4 3 16 16 C 1.50697 * 119.99629 * 184.62604 * 14 4 3 17 17 C 1.47200 * 115.55015 * 298.40877 * 16 14 4 18 18 N 5.42640 * 126.67131 * 93.08089 * 2 1 3 19 19 C 1.52997 * 117.50247 * 84.12120 * 16 14 4 20 20 C 1.52997 * 117.49800 * 152.74700 * 16 14 4 21 21 H 1.09008 * 117.50132 * 144.99694 * 20 16 14 22 22 C 1.53001 * 117.50051 * 359.97438 * 20 16 14 23 23 H 1.08007 * 119.99731 * 179.72799 * 1 2 3 24 24 H 1.07997 * 120.00382 * 359.73087 * 1 2 3 25 25 H 1.07997 * 120.00382 * 180.26913 * 2 1 3 26 26 H 1.09003 * 109.47191 * 245.27227 * 3 2 1 27 27 H 1.09000 * 109.47424 * 5.26941 * 3 2 1 28 28 H 1.09004 * 109.47173 * 210.46522 * 5 4 3 29 29 H 1.08998 * 109.47528 * 330.46374 * 5 4 3 30 30 H 0.96998 * 120.00479 * 179.97438 * 9 8 6 31 31 H 1.09000 * 117.50387 * 214.97336 * 19 16 14 32 32 H 1.09002 * 117.49952 * 359.97438 * 19 16 14 33 33 H 1.09002 * 109.46704 * 60.00198 * 22 20 16 34 34 H 1.08998 * 109.47183 * 180.02562 * 22 20 16 35 35 H 1.08999 * 109.47071 * 300.00674 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9984 1.3294 1.1276 5 6 4.3272 0.7281 0.9903 6 6 5.3011 1.7684 0.4999 7 1 4.9637 2.7765 0.3091 8 6 6.6226 1.4332 0.2947 9 7 7.0335 0.2058 0.5275 10 14 7.8299 2.7228 -0.3125 11 1 8.4437 3.4129 0.8504 12 1 8.8924 2.0667 -1.1161 13 1 7.1133 3.7140 -1.1547 14 6 2.6359 1.9048 2.2912 15 8 1.5082 2.3277 2.4332 16 6 3.6321 2.0228 3.4158 17 6 4.1506 0.7491 3.9409 18 7 4.5507 -0.2339 4.3461 19 6 4.5866 3.2182 3.3916 20 6 3.4442 3.1718 4.4083 21 1 3.7046 2.9847 5.4502 22 6 2.2596 4.1135 4.1829 23 1 -0.5400 -0.9354 -0.0044 24 1 -0.5400 0.9352 0.0044 25 1 1.8500 -0.9352 -0.0044 26 1 2.6174 1.4049 -0.9335 27 1 1.3589 2.1315 0.0944 28 1 4.6566 0.3497 1.9581 29 1 4.2823 -0.0933 0.2753 30 1 7.9632 -0.0302 0.3828 31 1 5.5988 3.0618 3.7645 32 1 4.4943 3.9193 2.5621 33 1 1.3307 3.5446 4.2217 34 1 2.2504 4.8783 4.9595 35 1 2.3540 4.5888 3.2065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451964759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:48 Heat of formation + Delta-G solvation = 27.136957 kcal Electronic energy + Delta-G solvation = -18405.386874 eV Core-core repulsion = 15597.739179 eV Total energy + Delta-G solvation = -2807.647695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.52243 -38.60085 -37.37899 -36.49950 -35.09525 -33.88409 -29.89481 -29.34947 -27.61608 -25.36495 -24.90220 -22.12355 -21.22352 -20.62436 -19.07556 -18.50246 -17.41378 -16.95822 -16.20121 -16.02578 -15.40528 -15.38568 -14.82833 -14.74311 -14.22845 -14.17193 -13.96997 -13.80867 -13.53353 -13.28259 -13.17942 -12.96956 -12.68386 -12.49070 -12.33203 -12.21926 -11.96436 -11.65475 -11.44460 -11.05925 -10.65687 -10.57459 -10.23978 -9.51424 -8.16521 -6.31132 1.20826 1.39253 1.44735 1.47665 1.51208 1.56505 1.72596 2.29842 2.45537 2.80382 2.91418 3.15390 3.52514 3.75312 3.85875 4.03546 4.22565 4.42396 4.47902 4.58823 4.80733 4.82038 4.92721 5.00635 5.02935 5.13174 5.20850 5.24148 5.58957 5.65087 5.67630 5.75948 5.84509 6.05802 6.42175 6.51099 6.81786 7.20976 7.41220 8.89903 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.009933 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.670540 B = 2818.283670 C = 3594.544460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.189 4.189 3 C 0.143 3.857 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.070 0.930 8 C 0.018 3.982 9 N -0.928 5.928 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.261 1.261 14 C 0.561 3.439 15 O -0.554 6.554 16 C -0.101 4.101 17 C 0.269 3.731 18 N -0.467 5.467 19 C -0.100 4.100 20 C -0.074 4.074 21 H 0.139 0.861 22 C -0.114 4.114 23 H 0.113 0.887 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.025 0.975 29 H 0.010 0.990 30 H 0.264 0.736 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 7.996 2.799 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.209 4.209 3 C 0.021 3.979 4 N -0.319 5.319 5 C 0.125 3.875 6 C -0.566 4.566 7 H 0.088 0.912 8 C -0.182 4.182 9 N -0.567 5.567 10 Si 0.781 3.219 11 H -0.195 1.195 12 H -0.218 1.218 13 H -0.186 1.186 14 C 0.347 3.653 15 O -0.433 6.433 16 C -0.108 4.108 17 C -0.046 4.046 18 N -0.143 5.143 19 C -0.139 4.139 20 C -0.093 4.093 21 H 0.157 0.843 22 C -0.171 4.171 23 H 0.131 0.869 24 H 0.126 0.874 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.897 6.586 3.442 10.844 hybrid contribution 1.079 -0.089 -0.839 1.369 sum -6.818 6.497 2.604 9.771 Atomic orbital electron populations 1.23987 0.94912 1.02943 0.97893 1.23246 0.96977 0.98305 1.02337 1.20575 0.91884 0.96173 0.89259 1.48203 1.16430 1.55210 1.12009 1.19211 0.78166 0.93327 0.96837 1.21575 0.93362 0.97005 1.44651 0.91231 1.25712 1.00075 0.97008 0.95410 1.70070 1.17148 1.19980 1.49532 0.85574 0.78450 0.79171 0.78689 1.19455 1.21826 1.18552 1.18980 0.86413 0.77550 0.82366 1.90589 1.20056 1.50771 1.81929 1.18427 1.05525 0.84615 1.02219 1.27506 0.92158 0.93243 0.91738 1.81175 1.10155 1.11160 1.11844 1.23351 0.95710 0.93237 1.01589 1.22894 0.98408 0.91955 0.96068 0.84310 1.21434 0.95688 0.97739 1.02207 0.86871 0.87416 0.88782 0.89760 0.89161 0.95760 0.97183 0.92758 0.86942 0.86304 0.91505 0.89187 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 14.32 67.78 0.97 -3.28 16 2 C -0.19 -6.16 9.84 25.65 0.25 -5.91 16 3 C 0.14 5.04 5.86 85.63 0.50 5.54 16 4 N -0.59 -24.11 2.44 -830.50 -2.03 -26.14 16 5 C 0.25 11.83 4.93 85.63 0.42 12.26 16 6 C -0.53 -25.93 8.92 25.60 0.23 -25.71 16 7 H 0.07 3.29 7.81 -2.91 -0.02 3.26 16 8 C 0.02 0.90 5.46 84.65 0.46 1.36 16 9 N -0.93 -52.15 13.29 21.44 0.28 -51.87 16 10 Si 0.96 40.26 29.54 68.60 2.03 42.28 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 12 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 14 C 0.56 21.76 6.79 87.66 0.60 22.35 16 15 O -0.55 -21.47 13.51 -3.03 -0.04 -21.51 16 16 C -0.10 -3.57 1.68 -54.74 -0.09 -3.66 16 17 C 0.27 11.02 12.35 89.44 1.10 12.13 16 18 N -0.47 -20.96 18.49 20.01 0.37 -20.59 16 19 C -0.10 -2.99 9.09 30.59 0.28 -2.71 16 20 C -0.07 -1.89 6.08 -10.79 -0.07 -1.96 16 21 H 0.14 2.90 8.14 -2.38 -0.02 2.88 16 22 C -0.11 -2.65 8.53 71.98 0.61 -2.03 16 23 H 0.11 2.54 8.06 -2.91 -0.02 2.52 16 24 H 0.11 2.65 7.84 -2.91 -0.02 2.62 16 25 H 0.09 3.26 8.06 -2.91 -0.02 3.24 16 26 H 0.08 2.96 8.11 -2.39 -0.02 2.94 16 27 H 0.09 2.98 7.00 -2.39 -0.02 2.96 16 28 H 0.02 1.27 4.69 -2.38 -0.01 1.26 16 29 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.12 3.47 8.05 -2.39 -0.02 3.45 16 33 H 0.07 1.79 6.79 -2.39 -0.02 1.78 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.29 7.78 -2.39 -0.02 1.27 16 Total: -1.00 -61.32 307.42 6.96 -54.35 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 1.08 Total: 15.08 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.27 Total: 8.39 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -1.37 Total: -98.59 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.04 Total: -21.51 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Total: -61.32 6.96 -54.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451964759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.491 kcal (2) G-P(sol) polarization free energy of solvation -61.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds