Wall clock time and date at job start Mon Mar 30 2020 18:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47570 * 2 1 4 4 C 1.50698 * 109.47200 * 239.99914 * 2 1 3 5 5 H 1.08001 * 119.99716 * 241.24266 * 4 2 1 6 6 C 1.37874 * 120.00148 * 61.24663 * 4 2 1 7 7 N 1.31512 * 119.99953 * 194.11203 * 6 4 2 8 8 Si 1.86795 * 119.99967 * 14.10609 * 6 4 2 9 9 H 1.48504 * 109.47110 * 84.54129 * 8 6 4 10 10 H 1.48501 * 109.47301 * 204.53705 * 8 6 4 11 11 H 1.48502 * 109.47319 * 324.53991 * 8 6 4 12 12 C 1.53007 * 109.47000 * 119.99889 * 2 1 3 13 13 N 1.46900 * 109.46993 * 299.99892 * 12 2 1 14 14 C 1.46897 * 110.99978 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.47473 * 179.97438 * 14 13 12 16 16 C 1.35053 * 125.60997 * 89.99995 * 15 14 13 17 17 C 1.40474 * 107.10709 * 180.02562 * 16 15 14 18 18 C 1.36555 * 106.70523 * 359.97438 * 17 16 15 19 19 C 1.43196 * 125.98636 * 179.97438 * 18 17 16 20 20 N 8.84166 * 92.69811 * 67.55925 * 2 1 3 21 21 O 1.34046 * 125.61989 * 270.02913 * 15 14 13 22 22 H 1.09004 * 109.47074 * 309.52244 * 1 2 3 23 23 H 1.09005 * 109.46857 * 69.51729 * 1 2 3 24 24 H 1.08999 * 109.47729 * 189.51583 * 1 2 3 25 25 H 1.08993 * 109.47695 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47061 * 300.00342 * 3 2 1 27 27 H 1.09009 * 109.47224 * 59.99450 * 3 2 1 28 28 H 0.97002 * 120.00330 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47033 * 180.02562 * 12 2 1 30 30 H 1.08996 * 109.46736 * 59.99778 * 12 2 1 31 31 H 1.00901 * 110.99705 * 56.04492 * 13 12 2 32 32 H 1.09007 * 109.46843 * 60.00370 * 14 13 12 33 33 H 1.08998 * 109.47332 * 300.00249 * 14 13 12 34 34 H 1.07999 * 126.44851 * 0.02562 * 16 15 14 35 35 H 1.07998 * 126.65005 * 179.74445 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6365 -1.6001 -1.1314 6 6 1.7206 -0.2246 -2.4825 7 7 1.9117 -0.9752 -3.5454 8 14 1.0266 1.4996 -2.6692 9 1 2.1412 2.4799 -2.7119 10 1 0.2442 1.5846 -3.9286 11 1 0.1426 1.8050 -1.5157 12 6 2.0399 -0.7213 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0207 -0.6951 3.6703 15 6 1.5002 0.0422 4.8772 16 6 0.3315 -0.2063 5.5069 17 6 0.2353 0.7030 6.5733 18 6 1.3653 1.4690 6.5392 19 6 1.6906 2.5294 7.4449 20 7 1.9461 3.3714 8.1631 21 8 2.1204 1.0530 5.5020 22 1 -0.3633 0.6540 0.7927 23 1 -0.3633 0.3596 -0.9628 24 1 -0.3634 -1.0135 0.1699 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6921 -0.6336 -4.4263 29 1 3.1299 -0.7209 1.2496 30 1 1.6765 -1.7489 1.2493 31 1 0.5437 0.0414 2.4401 32 1 3.1106 -0.6953 3.6874 33 1 1.6569 -1.7225 3.6870 34 1 -0.3927 -0.9619 5.2407 35 1 -0.5768 0.7834 7.2807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459730457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:51 Heat of formation + Delta-G solvation = 44.006752 kcal Electronic energy + Delta-G solvation = -17376.497949 eV Core-core repulsion = 14569.581784 eV Total energy + Delta-G solvation = -2806.916166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.70201 -38.94709 -37.82099 -35.90964 -34.16573 -33.64590 -31.33187 -27.91655 -27.70008 -27.00694 -24.98282 -23.23387 -22.19052 -20.59073 -20.30846 -18.07901 -17.56461 -17.37365 -16.94196 -15.86161 -15.41963 -15.19216 -14.94931 -14.81449 -14.59316 -14.47623 -14.15519 -14.10725 -13.88909 -13.69387 -13.65834 -13.49837 -12.66243 -12.51860 -12.26044 -11.90474 -11.83531 -11.57316 -10.98645 -10.90180 -10.54038 -10.29307 -9.60970 -9.21789 -8.26354 -6.24563 -0.03754 0.91543 1.37433 1.38494 1.42077 1.51936 1.91908 2.21012 2.38393 2.98460 3.11707 3.48545 3.87127 3.95002 4.24385 4.43699 4.46391 4.56643 4.63262 4.67308 4.86905 4.90592 4.95813 4.98330 5.03080 5.13182 5.27166 5.35395 5.45223 5.63863 5.78664 5.89928 5.98077 6.11823 6.16556 6.38237 6.58131 6.82982 7.41042 8.90622 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.039758 B = 0.004425 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.096566 B = 6325.825295 C = 6608.752229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 C -0.133 4.133 4 C -0.510 4.510 5 H 0.034 0.966 6 C 0.017 3.983 7 N -0.948 5.948 8 Si 0.940 3.060 9 H -0.291 1.291 10 H -0.318 1.318 11 H -0.211 1.211 12 C 0.098 3.902 13 N -0.690 5.690 14 C 0.128 3.872 15 C 0.040 3.960 16 C -0.203 4.203 17 C -0.093 4.093 18 C 0.001 3.999 19 C 0.313 3.687 20 N -0.426 5.426 21 O -0.170 6.170 22 H 0.062 0.938 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.037 0.963 26 H 0.019 0.981 27 H 0.068 0.932 28 H 0.262 0.738 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.350 0.650 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.188 0.812 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 0.743 19.415 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 C -0.190 4.190 4 C -0.549 4.549 5 H 0.052 0.948 6 C -0.180 4.180 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.219 1.219 10 H -0.248 1.248 11 H -0.135 1.135 12 C -0.030 4.030 13 N -0.324 5.324 14 C -0.001 4.001 15 C -0.013 4.013 16 C -0.223 4.223 17 C -0.115 4.115 18 C -0.051 4.051 19 C -0.001 4.001 20 N -0.104 5.104 21 O -0.064 6.064 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.170 0.830 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.205 0.795 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.808 2.590 20.259 20.982 hybrid contribution -0.403 -0.463 -1.204 1.351 sum -5.211 2.126 19.056 19.870 Atomic orbital electron populations 1.22201 0.96801 1.00485 1.00376 1.18492 0.93199 0.92664 0.92396 1.22125 1.00064 0.97730 0.99081 1.21241 1.32011 1.10917 0.90688 0.94752 1.25754 0.95701 1.00865 0.95635 1.70102 1.51382 1.38034 0.99317 0.86415 0.79193 0.80883 0.76422 1.21868 1.24818 1.13493 1.21652 0.99048 0.94423 0.87884 1.60479 1.17376 1.54051 1.00458 1.20545 1.01810 0.94424 0.83275 1.22961 0.93682 0.88709 0.95950 1.21972 0.98439 1.04375 0.97475 1.22299 0.96513 0.93234 0.99474 1.16584 0.95256 0.99866 0.93385 1.23714 0.93273 0.91065 0.92055 1.81330 1.06930 1.10686 1.11492 1.84069 1.44646 1.42561 1.35159 0.91948 0.94658 0.93384 0.94381 0.96282 0.91279 0.92939 0.92437 0.95294 0.83026 0.89233 0.88908 0.79500 0.79047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.24 71.98 0.52 -4.68 16 2 C 0.03 1.38 0.57 -52.93 -0.03 1.34 16 3 C -0.13 -5.33 7.54 71.98 0.54 -4.78 16 4 C -0.51 -27.29 8.62 25.60 0.22 -27.07 16 5 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 6 C 0.02 0.98 5.32 84.65 0.45 1.43 16 7 N -0.95 -58.45 13.96 21.45 0.30 -58.16 16 8 Si 0.94 44.29 22.79 68.60 1.56 45.86 16 9 H -0.29 -13.74 7.10 99.48 0.71 -13.04 16 10 H -0.32 -15.40 7.11 99.48 0.71 -14.70 16 11 H -0.21 -8.67 4.65 99.48 0.46 -8.21 16 12 C 0.10 3.27 4.57 86.31 0.39 3.66 16 13 N -0.69 -17.51 5.71 -517.92 -2.96 -20.47 16 14 C 0.13 2.44 6.21 85.56 0.53 2.97 16 15 C 0.04 0.73 6.83 24.95 0.17 0.90 16 16 C -0.20 -2.63 10.77 22.08 0.24 -2.40 16 17 C -0.09 -1.18 10.84 22.42 0.24 -0.94 16 18 C 0.00 0.02 7.08 23.12 0.16 0.19 16 19 C 0.31 6.71 15.88 88.33 1.40 8.12 16 20 N -0.43 -10.73 18.54 19.00 0.35 -10.38 16 21 O -0.17 -3.76 10.67 -5.69 -0.06 -3.82 16 22 H 0.06 1.87 7.06 -2.38 -0.02 1.85 16 23 H 0.03 1.43 4.30 -2.38 -0.01 1.41 16 24 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.02 0.80 2.26 -2.38 -0.01 0.80 16 27 H 0.07 2.41 7.60 -2.38 -0.02 2.39 16 28 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.35 8.03 6.99 -89.69 -0.63 7.40 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -66.24 291.43 4.29 -61.95 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.24 Total: 6.26 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.85 Total: -21.24 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.30 Total: -89.00 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.06 Total: -3.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.56 Total: 45.86 kcal Total: -66.24 4.29 -61.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.955 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds