Wall clock time and date at job start Mon Mar 30 2020 18:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 115.56325 * 2 1 4 4 C 1.53012 * 117.50055 * 214.31194 * 2 1 3 5 5 H 1.08999 * 117.51203 * 359.97438 * 4 2 1 6 6 C 1.50697 * 117.49793 * 145.02108 * 4 2 1 7 7 O 1.21290 * 120.00171 * 68.62287 * 6 4 2 8 8 N 1.34775 * 119.99830 * 248.34798 * 6 4 2 9 9 C 1.37096 * 120.00063 * 180.27959 * 8 6 4 10 10 H 1.07999 * 120.00242 * 17.71523 * 9 8 6 11 11 C 1.38949 * 120.00013 * 197.71749 * 9 8 6 12 12 N 1.31408 * 120.00036 * 21.09456 * 11 9 8 13 13 Si 1.86804 * 120.00174 * 201.09393 * 11 9 8 14 14 H 1.48493 * 109.46940 * 59.99877 * 13 11 9 15 15 H 1.48498 * 109.47411 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46748 * 300.00148 * 13 11 9 17 17 C 1.46503 * 119.99974 * 0.27323 * 8 6 4 18 18 C 1.47204 * 109.46730 * 84.14194 * 17 8 6 19 19 N 4.04685 * 81.57449 * 285.38377 * 2 1 3 20 20 C 1.53005 * 59.99942 * 252.51036 * 4 2 1 21 21 H 1.08995 * 117.49688 * 252.50998 * 20 4 2 22 22 C 1.53004 * 117.49740 * 107.51121 * 20 4 2 23 23 C 1.52994 * 117.49541 * 128.62195 * 22 20 4 24 24 C 1.52993 * 117.49680 * 60.00127 * 22 20 4 25 25 H 1.09005 * 109.47322 * 154.29382 * 1 2 3 26 26 H 1.08996 * 109.47016 * 274.29455 * 1 2 3 27 27 H 1.08996 * 109.47113 * 34.30196 * 1 2 3 28 28 H 0.97001 * 120.00411 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46962 * 204.13780 * 17 8 6 30 30 H 1.08998 * 109.47274 * 324.13959 * 17 8 6 31 31 H 1.09000 * 115.54659 * 274.32617 * 22 20 4 32 32 H 1.08998 * 117.50115 * 0.02562 * 23 22 20 33 33 H 1.09003 * 117.49932 * 145.02238 * 23 22 20 34 34 H 1.09002 * 117.49987 * 214.97517 * 24 22 20 35 35 H 1.08999 * 117.50142 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7651 5 1 1.6115 -1.8589 -1.2681 6 6 3.5293 -0.7811 -1.4608 7 8 4.5186 -0.5210 -0.8091 8 7 3.5876 -0.7715 -2.8073 9 6 4.7651 -0.4679 -3.4403 10 1 5.6979 -0.5171 -2.8982 11 6 4.7585 -0.0968 -4.7793 12 7 3.6568 0.3634 -5.3281 13 14 6.3158 -0.2520 -5.7993 14 1 6.7529 -1.6709 -5.8225 15 1 6.0471 0.2064 -7.1860 16 1 7.3855 0.5858 -5.2000 17 6 2.3926 -1.0857 -3.5945 18 6 1.5710 0.1265 -3.7442 19 7 0.9370 1.0620 -3.8597 20 6 2.2365 -1.1211 0.7650 21 1 3.1715 -0.8752 1.2682 22 6 1.3592 -2.1566 1.4714 23 6 2.0160 -3.0216 2.5489 24 6 1.6485 -3.6334 1.1956 25 1 -0.3634 -0.9260 -0.4458 26 1 -0.3633 0.0770 1.0247 27 1 -0.3633 0.8489 -0.5791 28 1 3.6522 0.6229 -6.2628 29 1 2.6906 -1.4465 -4.5789 30 1 1.8141 -1.8562 -3.0849 31 1 0.3193 -1.8671 1.6226 32 1 3.0730 -2.8527 2.7549 33 1 1.4083 -3.3014 3.4094 34 1 0.7989 -4.3157 1.1658 35 1 2.4635 -3.8673 0.5107 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528328114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:46 Heat of formation + Delta-G solvation = 31.627458 kcal Electronic energy + Delta-G solvation = -18145.625623 eV Core-core repulsion = 15338.172651 eV Total energy + Delta-G solvation = -2807.452972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10455 -39.13345 -37.53496 -36.32087 -35.94457 -33.72414 -29.71624 -29.14191 -27.28128 -25.12591 -23.18237 -22.89047 -20.52460 -20.02688 -19.70906 -18.34375 -17.96183 -16.87659 -16.50131 -15.97487 -15.45905 -15.35615 -14.84044 -14.69838 -14.11920 -13.87845 -13.61085 -13.55544 -13.41428 -13.19951 -12.91050 -12.89213 -12.34253 -12.28264 -12.17452 -12.09859 -11.99336 -11.69565 -11.36637 -11.13571 -10.73001 -10.46627 -10.31847 -9.94009 -8.42414 -5.98691 1.37712 1.46257 1.55630 1.74934 1.98247 2.28093 2.35771 2.69576 2.96530 3.05985 3.19914 3.58522 3.73144 3.86820 3.93116 4.12387 4.19565 4.24187 4.40343 4.42372 4.57484 4.68193 4.82573 4.89909 4.91572 4.97401 5.12121 5.15607 5.22240 5.38560 5.39892 5.45611 5.46286 6.02029 6.38930 7.03749 7.09728 7.33857 7.92286 8.61107 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.006954 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.515049 B = 4025.714535 C = 4641.424285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 H 0.071 0.929 4 C -0.173 4.173 5 H 0.143 0.857 6 C 0.473 3.527 7 O -0.624 6.624 8 N -0.450 5.450 9 C -0.346 4.346 10 H 0.080 0.920 11 C 0.007 3.993 12 N -0.891 5.891 13 Si 0.988 3.012 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.284 1.284 17 C 0.224 3.776 18 C 0.259 3.741 19 N -0.503 5.503 20 C -0.081 4.081 21 H 0.085 0.915 22 C -0.126 4.126 23 C -0.175 4.175 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.276 0.724 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 -9.373 7.634 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 H 0.089 0.911 4 C -0.193 4.193 5 H 0.161 0.839 6 C 0.264 3.736 7 O -0.510 6.510 8 N -0.169 5.169 9 C -0.473 4.473 10 H 0.098 0.902 11 C -0.196 4.196 12 N -0.529 5.529 13 Si 0.812 3.188 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.210 1.210 17 C 0.097 3.903 18 C -0.058 4.058 19 N -0.184 5.184 20 C -0.099 4.099 21 H 0.103 0.897 22 C -0.144 4.144 23 C -0.212 4.212 24 C -0.209 4.209 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.433 -7.805 7.551 13.749 hybrid contribution 1.591 0.326 -0.871 1.843 sum -6.842 -7.478 6.680 12.139 Atomic orbital electron populations 1.21325 0.89819 1.02562 1.02974 1.22344 0.96854 0.92765 1.02152 0.91103 1.22438 0.96780 1.04596 0.95516 0.83912 1.20198 0.89767 0.81412 0.82219 1.90483 1.39414 1.55494 1.65615 1.43719 1.09154 1.60062 1.03937 1.19593 0.86259 1.47275 0.94211 0.90237 1.25911 1.01463 0.94262 0.97954 1.69937 1.29421 1.38945 1.14629 0.85075 0.77679 0.79257 0.76812 1.18400 1.20133 1.20960 1.19025 0.83363 0.87758 1.00146 1.29628 0.90902 0.94978 0.90315 1.80865 1.14826 1.11031 1.11671 1.21764 0.99421 0.98312 0.90441 0.89698 1.21731 0.99465 0.90499 1.02727 1.23045 1.01205 1.03674 0.93270 1.23022 1.03848 0.94915 0.99102 0.90559 0.89693 0.93289 0.91430 0.85898 0.84888 0.85222 0.90141 0.86634 0.86475 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 8.82 71.98 0.63 -2.01 16 2 C -0.12 -3.94 6.11 -10.79 -0.07 -4.00 16 3 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 4 C -0.17 -5.99 4.47 -11.54 -0.05 -6.04 16 5 H 0.14 4.02 6.43 -2.39 -0.02 4.00 16 6 C 0.47 22.33 7.35 87.66 0.64 22.97 16 7 O -0.62 -34.83 15.91 -3.06 -0.05 -34.88 16 8 N -0.45 -21.53 2.60 -645.41 -1.68 -23.21 16 9 C -0.35 -18.49 9.32 84.04 0.78 -17.71 16 10 H 0.08 4.60 7.39 -2.91 -0.02 4.58 16 11 C 0.01 0.32 4.87 84.93 0.41 0.74 16 12 N -0.89 -44.96 9.46 21.66 0.21 -44.76 16 13 Si 0.99 40.51 29.60 68.60 2.03 42.54 16 14 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 C 0.22 8.74 4.91 84.57 0.42 9.16 16 18 C 0.26 11.33 13.48 89.44 1.21 12.53 16 19 N -0.50 -23.66 18.54 20.01 0.37 -23.29 16 20 C -0.08 -2.49 5.38 -10.79 -0.06 -2.55 16 21 H 0.08 3.14 7.67 -2.39 -0.02 3.12 16 22 C -0.13 -2.78 5.48 -10.80 -0.06 -2.84 16 23 C -0.18 -3.48 10.25 30.59 0.31 -3.17 16 24 C -0.17 -3.43 10.17 30.59 0.31 -3.11 16 25 H 0.08 1.57 7.90 -2.38 -0.02 1.55 16 26 H 0.08 1.62 7.68 -2.39 -0.02 1.60 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 29 H 0.12 4.91 6.45 -2.39 -0.02 4.90 16 30 H 0.13 3.78 6.25 -2.39 -0.01 3.77 16 31 H 0.13 2.31 6.71 -2.39 -0.02 2.29 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.52 301.68 6.46 -61.05 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.10 Total: 18.57 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 4.49 Total: 3.98 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.10 Total: -91.26 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.05 Total: -34.88 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -67.52 6.46 -61.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528328114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.682 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds