Wall clock time and date at job start Mon Mar 30 2020 18:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 C 1.52992 * 109.47617 * 120.00539 * 2 1 3 5 5 C 1.50700 * 109.47394 * 64.99555 * 4 2 1 6 6 O 1.21281 * 119.99650 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00292 * 179.97438 * 5 4 2 8 8 C 1.39474 * 120.00016 * 185.07925 * 7 5 4 9 9 C 1.38593 * 119.57580 * 185.37049 * 8 7 5 10 10 C 1.40815 * 118.79129 * 179.70681 * 9 8 7 11 11 C 1.41538 * 120.99422 * 180.25132 * 10 9 8 12 12 H 1.07998 * 120.00306 * 153.74953 * 11 10 9 13 13 C 1.40034 * 120.00277 * 333.74953 * 11 10 9 14 14 N 1.30744 * 119.99801 * 350.15844 * 13 11 10 15 15 Si 1.86796 * 120.00202 * 170.15769 * 13 11 10 16 16 H 1.48503 * 109.46987 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46958 * 119.99814 * 15 13 11 18 18 H 1.48500 * 109.47291 * 240.00063 * 15 13 11 19 19 C 1.41166 * 118.00879 * 0.26601 * 10 9 8 20 20 C 1.37600 * 119.01609 * 0.02562 * 19 10 9 21 21 N 1.32080 * 121.10507 * 0.02562 * 20 19 10 22 22 H 1.08993 * 109.47106 * 59.99433 * 1 2 3 23 23 H 1.08994 * 109.46780 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46387 * 299.99629 * 1 2 3 25 25 H 1.09009 * 109.46816 * 240.00944 * 2 1 3 26 26 H 1.09004 * 109.47406 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.47332 * 300.00644 * 3 2 1 28 28 H 1.08995 * 109.47024 * 60.00556 * 3 2 1 29 29 H 1.09003 * 109.47054 * 305.00024 * 4 2 1 30 30 H 1.09003 * 109.47566 * 184.99980 * 4 2 1 31 31 H 0.96998 * 119.99499 * 5.08694 * 7 5 4 32 32 H 1.08003 * 120.60742 * 359.97184 * 9 8 7 33 33 H 0.96998 * 119.99806 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.49511 * 179.97438 * 19 10 9 35 35 H 1.07994 * 119.44290 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1734 1.1887 6 8 1.0117 -2.5903 0.2398 7 7 1.9855 -3.0088 2.1887 8 6 1.7100 -4.3721 2.0844 9 6 1.9650 -5.2059 3.1617 10 6 1.6748 -6.5785 3.0406 11 6 1.9118 -7.4710 4.1132 12 1 1.3336 -8.3792 4.1979 13 6 2.8962 -7.1766 5.0647 14 7 3.7241 -6.1849 4.8634 15 14 3.0263 -8.2005 6.6216 16 1 1.9811 -9.2553 6.6091 17 1 4.3678 -8.8343 6.6865 18 1 2.8340 -7.3264 7.8065 19 6 1.1407 -7.0377 1.8172 20 6 0.9274 -6.1346 0.8012 21 7 1.2142 -4.8545 0.9548 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.8933 -0.5137 -0.8902 26 1 3.1301 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6055 -0.2619 2.1369 30 1 3.1264 -0.6444 1.2950 31 1 2.4247 -2.6619 2.9810 32 1 2.3748 -4.8095 4.0790 33 1 4.4057 -5.9807 5.5226 34 1 0.9038 -8.0824 1.6804 35 1 0.5187 -6.4783 -0.1375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670560.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:02 Heat of formation + Delta-G solvation = -36.976012 kcal Electronic energy + Delta-G solvation = -17570.169882 eV Core-core repulsion = 14759.742040 eV Total energy + Delta-G solvation = -2810.427842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27702 -39.70114 -36.67606 -35.95167 -35.40140 -32.45890 -30.90226 -28.68701 -27.93679 -27.88109 -23.87557 -23.55135 -21.63142 -20.68402 -19.43460 -18.41438 -17.42132 -17.01824 -16.60145 -16.06336 -15.81495 -15.60145 -15.08310 -14.70819 -14.55216 -14.35828 -14.19661 -13.26582 -13.17500 -12.98875 -12.86874 -12.71275 -12.68607 -12.12974 -12.02674 -11.86844 -11.72244 -11.55290 -11.43183 -11.17345 -10.79293 -9.93341 -9.58238 -8.86236 -8.57918 -6.58902 0.75009 0.99254 1.41423 1.53930 1.56131 1.94214 2.20357 2.23960 2.82746 3.68974 3.74240 3.88473 4.05833 4.22051 4.43851 4.68330 4.73517 4.74387 4.78401 4.86049 4.88548 4.92027 5.06935 5.10114 5.15096 5.24254 5.32185 5.46945 5.49375 5.56046 5.68431 5.92659 6.16089 6.49760 6.64146 6.79334 6.83771 7.38544 7.84705 8.29081 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.005007 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.975590 B = 5590.622031 C = 6194.711545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.125 4.125 5 C 0.490 3.510 6 O -0.523 6.523 7 N -0.657 5.657 8 C 0.332 3.668 9 C -0.259 4.259 10 C 0.112 3.888 11 C -0.485 4.485 12 H 0.082 0.918 13 C 0.037 3.963 14 N -0.818 5.818 15 Si 0.991 3.009 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.261 1.261 19 C -0.298 4.298 20 C 0.111 3.889 21 N -0.578 5.578 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.422 0.578 32 H 0.130 0.870 33 H 0.292 0.708 34 H 0.115 0.885 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 11.223 0.320 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.164 4.164 5 C 0.278 3.722 6 O -0.396 6.396 7 N -0.304 5.304 8 C 0.105 3.895 9 C -0.284 4.284 10 C 0.104 3.896 11 C -0.516 4.516 12 H 0.100 0.900 13 C -0.179 4.179 14 N -0.444 5.444 15 Si 0.811 3.189 16 H -0.183 1.183 17 H -0.191 1.191 18 H -0.186 1.186 19 C -0.322 4.322 20 C -0.043 4.043 21 N -0.297 5.297 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.260 0.740 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.208 11.733 -1.011 11.779 hybrid contribution 0.455 -1.256 1.502 2.010 sum 0.663 10.477 0.491 10.510 Atomic orbital electron populations 1.21911 0.95587 1.01424 1.01887 1.20852 0.96004 0.96822 0.96279 1.21791 1.01425 0.93578 1.02762 1.21858 1.04306 0.88273 1.02003 1.21835 0.79028 0.89707 0.81661 1.90711 1.37575 1.78170 1.33173 1.43639 1.59906 1.04450 1.22443 1.18529 0.95003 0.84989 0.90929 1.21680 1.13914 0.93778 0.99045 1.18037 0.87324 0.92186 0.92088 1.19904 1.17784 1.06409 1.07479 0.89967 1.26819 0.93021 0.96179 1.01892 1.69783 1.13239 1.26318 1.35091 0.85026 0.79171 0.78548 0.76169 1.18284 1.19057 1.18568 1.22109 1.14713 0.99880 0.95451 1.22212 0.95931 0.87989 0.98184 1.67323 1.22025 1.16108 1.24291 0.92254 0.94299 0.91966 0.92803 0.91695 0.92015 0.91290 0.86418 0.86686 0.74003 0.85283 0.89752 0.86665 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.93 71.98 0.64 -3.20 16 2 C -0.08 -1.88 2.57 -10.80 -0.03 -1.91 16 3 C -0.14 -2.19 9.19 71.98 0.66 -1.53 16 4 C -0.12 -2.92 5.18 29.85 0.15 -2.77 16 5 C 0.49 17.99 7.50 87.66 0.66 18.65 16 6 O -0.52 -23.93 12.26 -3.03 -0.04 -23.97 16 7 N -0.66 -25.71 5.39 -308.66 -1.66 -27.38 16 8 C 0.33 16.50 7.40 132.75 0.98 17.49 16 9 C -0.26 -13.51 8.61 22.99 0.20 -13.31 16 10 C 0.11 6.07 5.60 -21.12 -0.12 5.95 16 11 C -0.48 -25.38 9.14 23.52 0.21 -25.16 16 12 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 13 C 0.04 1.77 5.31 85.29 0.45 2.22 16 14 N -0.82 -40.08 10.70 21.84 0.23 -39.85 16 15 Si 0.99 36.03 29.57 68.60 2.03 38.06 16 16 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 17 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 18 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 19 C -0.30 -15.08 9.90 22.84 0.23 -14.85 16 20 C 0.11 5.47 11.15 84.50 0.94 6.41 16 21 N -0.58 -30.33 7.89 -193.53 -1.53 -31.86 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 1.30 5.95 -2.39 -0.01 1.29 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.51 7.96 -2.38 -0.02 1.49 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.42 13.31 8.70 -92.71 -0.81 12.50 16 32 H 0.13 6.67 6.11 -2.91 -0.02 6.66 16 33 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 34 H 0.12 5.33 8.06 -2.91 -0.02 5.30 16 35 H 0.15 6.32 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -67.71 295.59 4.31 -63.39 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.29 Total: 33.62 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.99 Total: -12.01 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -2.96 Total: -99.09 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.04 Total: -23.97 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -67.71 4.31 -63.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670560.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.419 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds