Wall clock time and date at job start Mon Mar 30 2020 18:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46975 * 2 1 4 4 C 1.52995 * 109.47120 * 239.99917 * 2 1 3 5 5 N 1.46901 * 109.47345 * 185.00129 * 4 2 1 6 6 N 1.46500 * 109.46976 * 120.00251 * 2 1 3 7 7 C 1.34779 * 119.99957 * 275.27358 * 6 2 1 8 8 O 1.21554 * 119.99609 * 359.72401 * 7 6 2 9 9 C 1.47883 * 120.00368 * 179.72800 * 7 6 2 10 10 C 1.39924 * 120.02065 * 359.72607 * 9 7 6 11 11 C 1.38329 * 120.35512 * 179.71875 * 10 9 7 12 12 C 1.37753 * 120.41246 * 0.55821 * 11 10 9 13 13 C 1.40752 * 120.03875 * 359.71871 * 12 11 10 14 14 C 1.41439 * 120.17871 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99545 * 24.44035 * 14 13 12 16 16 C 1.39939 * 120.00394 * 204.44133 * 14 13 12 17 17 N 1.30826 * 119.99591 * 17.87943 * 16 14 13 18 18 Si 1.86795 * 120.00089 * 197.88145 * 16 14 13 19 19 H 1.48500 * 109.47248 * 59.99913 * 18 16 14 20 20 H 1.48501 * 109.47038 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46996 * 299.99565 * 18 16 14 22 22 C 1.38991 * 120.02586 * 179.97438 * 9 7 6 23 23 H 1.09000 * 109.46993 * 299.99734 * 1 2 3 24 24 H 1.08998 * 109.46967 * 59.99977 * 1 2 3 25 25 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47460 * 304.99858 * 4 2 1 27 27 H 1.09000 * 109.47397 * 64.99989 * 4 2 1 28 28 H 1.00896 * 111.00028 * 56.04609 * 5 4 2 29 29 H 1.00898 * 110.99959 * 180.02562 * 5 4 2 30 30 H 0.96994 * 120.00219 * 95.00129 * 6 2 1 31 31 H 1.07997 * 119.82038 * 359.97289 * 10 9 7 32 32 H 1.08003 * 119.79464 * 180.25484 * 11 10 9 33 33 H 1.08008 * 119.98260 * 179.74177 * 12 11 10 34 34 H 0.97004 * 119.99686 * 180.02562 * 17 16 14 35 35 H 1.07995 * 120.20595 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8267 -1.1904 6 7 2.0184 -0.6907 1.1961 7 6 2.1418 -0.0197 2.3585 8 8 1.8528 1.1597 2.4131 9 6 2.6290 -0.7183 3.5675 10 6 2.9565 -2.0773 3.5065 11 6 3.4184 -2.7362 4.6317 12 6 3.5504 -2.0654 5.8276 13 6 3.2204 -0.6996 5.9096 14 6 3.3553 -0.0078 7.1358 15 1 4.0490 -0.3639 7.8832 16 6 2.5901 1.1380 7.3808 17 7 1.5225 1.3771 6.6636 18 14 3.0932 2.3258 8.7318 19 1 4.4506 2.8554 8.4451 20 1 2.1245 3.4499 8.7886 21 1 3.1040 1.6161 10.0362 22 6 2.7570 -0.0267 4.7663 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6055 -1.7198 -1.2951 27 1 1.7517 -0.1584 -2.1370 28 1 3.7996 -1.2884 -0.3433 29 1 3.8656 -1.2994 -2.0052 30 1 2.2491 -1.6318 1.1526 31 1 2.8520 -2.6137 2.5750 32 1 3.6724 -3.7843 4.5734 33 1 3.9077 -2.5877 6.7029 34 1 0.9923 2.1716 6.8331 35 1 2.5020 1.0214 4.8188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593905626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:07 Heat of formation + Delta-G solvation = -28.540267 kcal Electronic energy + Delta-G solvation = -17690.419893 eV Core-core repulsion = 14880.357852 eV Total energy + Delta-G solvation = -2810.062040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.38337 -37.26512 -36.09904 -33.76260 -32.81158 -30.95116 -29.54202 -29.29279 -25.34310 -24.98117 -22.94453 -21.05676 -20.47979 -19.62215 -17.80184 -16.33285 -15.95720 -15.58863 -15.07806 -14.88275 -14.59105 -14.06975 -13.80078 -13.23083 -12.99322 -12.80963 -12.49983 -12.32404 -12.16441 -11.72184 -11.53962 -11.14588 -11.07112 -10.94303 -10.71951 -10.49890 -10.01341 -9.69436 -9.20284 -8.97713 -8.81765 -8.63227 -7.62478 -7.51885 -6.79797 -4.41146 2.23074 2.82796 3.08166 3.09871 3.17407 3.68375 3.88862 3.93083 4.41985 4.65080 4.88136 5.13696 5.38637 5.56056 5.59907 5.62678 5.68970 5.81522 6.05335 6.23101 6.26622 6.32742 6.72273 6.90995 6.98890 7.01116 7.03935 7.21783 7.31061 7.38669 7.70331 7.76465 7.93096 8.10744 8.20092 8.51009 8.80582 8.84040 8.99660 10.14916 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.028961 B = 0.005775 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.585128 B = 4847.091535 C = 5455.236533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.092 0.908 4 C 0.056 3.944 5 N -0.849 5.849 6 N -0.731 5.731 7 C 0.566 3.434 8 O -0.544 6.544 9 C -0.127 4.127 10 C -0.219 4.219 11 C -0.097 4.097 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.092 4.092 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.345 0.655 29 H 0.339 0.661 30 H 0.393 0.607 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.285 0.715 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -4.531 -10.445 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.075 4.075 5 N -0.380 5.380 6 N -0.385 5.385 7 C 0.357 3.643 8 O -0.422 6.422 9 C -0.130 4.130 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.097 3.903 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.112 4.112 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.545 -2.692 -10.440 10.795 hybrid contribution -0.019 -1.085 0.524 1.205 sum -0.565 -3.777 -9.916 10.626 Atomic orbital electron populations 1.22171 0.95494 1.01896 1.02645 1.20906 0.93459 0.98314 0.83619 0.88963 1.22085 0.88388 0.98775 0.98267 1.58597 1.09792 1.61854 1.07780 1.45962 1.69286 1.13727 1.09540 1.18811 0.76155 0.86290 0.83050 1.90692 1.50243 1.16109 1.85127 1.19489 1.06052 0.94339 0.93167 1.20300 1.12276 0.93912 0.97470 1.20423 1.00170 0.97516 0.93464 1.21091 1.11119 0.94578 0.96544 1.17601 0.89339 0.90633 0.92770 1.19567 1.20302 1.07919 1.01122 0.90101 1.25968 0.93368 0.97942 0.97303 1.69784 1.10355 1.24935 1.35644 0.86319 0.79721 0.79561 0.80892 1.18684 1.20215 1.18967 1.21640 0.99567 1.00465 0.89555 0.91482 0.91997 0.92756 0.95273 0.89925 0.84097 0.84833 0.77175 0.89469 0.88982 0.88651 0.90362 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 2 C 0.14 2.02 2.88 -67.93 -0.20 1.82 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 C 0.06 0.60 6.40 -3.83 -0.02 0.57 16 5 N -0.85 -9.31 9.62 -10.37 -0.10 -9.41 16 6 N -0.73 -11.98 4.31 -54.74 -0.24 -12.22 16 7 C 0.57 12.43 7.74 -12.31 -0.10 12.34 16 8 O -0.54 -13.78 16.00 5.32 0.09 -13.69 16 9 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 10 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 11 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 12 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 13 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 14 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 15 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 16 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 17 N -0.78 -20.89 10.96 55.55 0.61 -20.28 16 18 Si 0.91 18.88 29.60 -169.99 -5.03 13.85 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.09 -2.47 8.24 -38.44 -0.32 -2.79 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.35 3.95 7.84 -39.29 -0.31 3.64 16 29 H 0.34 2.85 9.08 -39.29 -0.36 2.49 16 30 H 0.39 5.56 6.17 -40.82 -0.25 5.30 16 31 H 0.09 1.48 6.38 -52.49 -0.33 1.15 16 32 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 34 H 0.29 7.01 8.30 -40.82 -0.34 6.67 16 35 H 0.13 3.89 5.74 -52.49 -0.30 3.58 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -29.92 297.31 -7.72 -37.64 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -4.46 Total: 14.65 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.07 Total: -15.01 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.27 Total: -41.92 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.92 -7.72 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593905626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.098 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds