Wall clock time and date at job start Mon Mar 30 2020 18:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46975 * 2 1 4 4 C 1.52995 * 109.47120 * 239.99917 * 2 1 3 5 5 N 1.46901 * 109.47345 * 185.00129 * 4 2 1 6 6 N 1.46500 * 109.46976 * 120.00251 * 2 1 3 7 7 C 1.34779 * 119.99957 * 275.27358 * 6 2 1 8 8 O 1.21554 * 119.99609 * 359.72401 * 7 6 2 9 9 C 1.47883 * 120.00368 * 179.72800 * 7 6 2 10 10 C 1.39924 * 120.02065 * 359.72607 * 9 7 6 11 11 C 1.38329 * 120.35512 * 179.71875 * 10 9 7 12 12 C 1.37753 * 120.41246 * 0.55821 * 11 10 9 13 13 C 1.40752 * 120.03875 * 359.71871 * 12 11 10 14 14 C 1.41439 * 120.17871 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99545 * 24.44035 * 14 13 12 16 16 C 1.39939 * 120.00394 * 204.44133 * 14 13 12 17 17 N 1.30826 * 119.99591 * 17.87943 * 16 14 13 18 18 Si 1.86795 * 120.00089 * 197.88145 * 16 14 13 19 19 H 1.48500 * 109.47248 * 59.99913 * 18 16 14 20 20 H 1.48501 * 109.47038 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46996 * 299.99565 * 18 16 14 22 22 C 1.38991 * 120.02586 * 179.97438 * 9 7 6 23 23 H 1.09000 * 109.46993 * 299.99734 * 1 2 3 24 24 H 1.08998 * 109.46967 * 59.99977 * 1 2 3 25 25 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47460 * 304.99858 * 4 2 1 27 27 H 1.09000 * 109.47397 * 64.99989 * 4 2 1 28 28 H 1.00896 * 111.00028 * 56.04609 * 5 4 2 29 29 H 1.00898 * 110.99959 * 180.02562 * 5 4 2 30 30 H 0.96994 * 120.00219 * 95.00129 * 6 2 1 31 31 H 1.07997 * 119.82038 * 359.97289 * 10 9 7 32 32 H 1.08003 * 119.79464 * 180.25484 * 11 10 9 33 33 H 1.08008 * 119.98260 * 179.74177 * 12 11 10 34 34 H 0.97004 * 119.99686 * 180.02562 * 17 16 14 35 35 H 1.07995 * 120.20595 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8267 -1.1904 6 7 2.0184 -0.6907 1.1961 7 6 2.1418 -0.0197 2.3585 8 8 1.8528 1.1597 2.4131 9 6 2.6290 -0.7183 3.5675 10 6 2.9565 -2.0773 3.5065 11 6 3.4184 -2.7362 4.6317 12 6 3.5504 -2.0654 5.8276 13 6 3.2204 -0.6996 5.9096 14 6 3.3553 -0.0078 7.1358 15 1 4.0490 -0.3639 7.8832 16 6 2.5901 1.1380 7.3808 17 7 1.5225 1.3771 6.6636 18 14 3.0932 2.3258 8.7318 19 1 4.4506 2.8554 8.4451 20 1 2.1245 3.4499 8.7886 21 1 3.1040 1.6161 10.0362 22 6 2.7570 -0.0267 4.7663 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6055 -1.7198 -1.2951 27 1 1.7517 -0.1584 -2.1370 28 1 3.7996 -1.2884 -0.3433 29 1 3.8656 -1.2994 -2.0052 30 1 2.2491 -1.6318 1.1526 31 1 2.8520 -2.6137 2.5750 32 1 3.6724 -3.7843 4.5734 33 1 3.9077 -2.5877 6.7029 34 1 0.9923 2.1716 6.8331 35 1 2.5020 1.0214 4.8188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593905626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:05 Heat of formation + Delta-G solvation = -50.212671 kcal Electronic energy + Delta-G solvation = -17691.359679 eV Core-core repulsion = 14880.357852 eV Total energy + Delta-G solvation = -2811.001826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.01648 -38.97021 -37.49202 -35.62147 -34.06115 -32.43566 -31.32385 -30.89019 -27.21638 -26.01340 -24.54814 -22.84156 -21.81331 -21.27508 -19.56510 -17.98658 -17.39946 -16.87625 -16.59689 -16.35330 -15.94291 -15.62218 -15.43408 -15.02484 -14.51039 -14.26673 -14.04420 -13.51923 -13.43696 -13.22009 -12.92147 -12.80273 -12.74799 -12.50088 -12.21217 -12.01634 -11.88624 -11.51012 -11.06712 -10.74781 -10.14587 -9.59587 -9.46824 -9.38191 -8.67042 -6.38568 0.39542 1.01578 1.35722 1.47658 1.50532 2.12106 2.19325 2.25913 2.79248 3.53488 3.70374 3.89876 4.08306 4.18834 4.36984 4.42687 4.58348 4.62120 4.73873 4.78381 4.88503 5.05839 5.09389 5.20075 5.23916 5.31595 5.51396 5.57929 5.86873 5.92706 6.05491 6.19929 6.29001 6.51332 6.59196 6.70345 6.87591 6.94953 7.35397 8.29635 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.028961 B = 0.005775 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.585128 B = 4847.091535 C = 5455.236533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.060 0.940 4 C 0.066 3.934 5 N -0.864 5.864 6 N -0.705 5.705 7 C 0.562 3.438 8 O -0.590 6.590 9 C -0.139 4.139 10 C -0.196 4.196 11 C -0.095 4.095 12 C -0.219 4.219 13 C 0.067 3.933 14 C -0.499 4.499 15 H 0.084 0.916 16 C 0.029 3.971 17 N -0.826 5.826 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.251 1.251 22 C -0.133 4.133 23 H 0.028 0.972 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.342 0.658 29 H 0.356 0.644 30 H 0.408 0.592 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.286 0.714 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -6.968 -12.240 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.078 0.922 4 C -0.065 4.065 5 N -0.397 5.397 6 N -0.358 5.358 7 C 0.352 3.648 8 O -0.471 6.471 9 C -0.142 4.142 10 C -0.216 4.216 11 C -0.113 4.113 12 C -0.238 4.238 13 C 0.065 3.935 14 C -0.528 4.528 15 H 0.103 0.897 16 C -0.185 4.185 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.153 4.153 23 H 0.047 0.953 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.155 0.845 29 H 0.170 0.830 30 H 0.246 0.754 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.118 -5.194 -12.288 13.341 hybrid contribution -0.133 -0.495 0.882 1.020 sum -0.251 -5.689 -11.406 12.749 Atomic orbital electron populations 1.22118 0.94395 1.02976 1.02169 1.21126 0.94363 0.97141 0.84128 0.92197 1.22022 0.88282 0.99778 0.96378 1.58570 1.10119 1.62539 1.08470 1.45736 1.67385 1.14162 1.08516 1.18724 0.76127 0.85805 0.84185 1.90669 1.52395 1.18132 1.85938 1.19813 1.05628 0.95825 0.92922 1.20832 1.08828 0.92470 0.99483 1.20929 0.98546 0.99628 0.92195 1.21415 1.10324 0.93667 0.98429 1.17950 0.90439 0.92237 0.92915 1.19858 1.21539 1.09691 1.01747 0.89743 1.26866 0.92798 0.99264 0.99619 1.69892 1.11775 1.25670 1.37860 0.85241 0.79128 0.77186 0.78141 1.18505 1.19702 1.17487 1.21442 1.02923 0.99411 0.91548 0.95301 0.89204 0.90800 0.92687 0.88143 0.84472 0.82962 0.75382 0.84500 0.84253 0.87368 0.90332 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.48 71.98 0.68 -3.17 16 2 C 0.14 3.66 2.88 44.99 0.13 3.79 16 3 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 4 C 0.07 1.17 6.40 86.30 0.55 1.72 16 5 N -0.86 -16.24 9.62 -186.72 -1.80 -18.04 16 6 N -0.70 -21.90 4.31 -445.37 -1.92 -23.82 16 7 C 0.56 25.00 7.74 86.80 0.67 25.67 16 8 O -0.59 -31.52 16.00 -3.89 -0.06 -31.58 16 9 C -0.14 -6.60 5.87 -20.13 -0.12 -6.72 16 10 C -0.20 -7.60 9.55 22.70 0.22 -7.38 16 11 C -0.10 -3.72 10.01 22.18 0.22 -3.50 16 12 C -0.22 -10.24 9.78 22.77 0.22 -10.02 16 13 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 14 C -0.50 -27.54 9.05 23.47 0.21 -27.33 16 15 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 16 C 0.03 1.56 5.14 85.25 0.44 2.00 16 17 N -0.83 -47.00 10.96 21.82 0.24 -46.76 16 18 Si 0.98 40.23 29.60 68.60 2.03 42.26 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 22 C -0.13 -7.49 8.24 23.01 0.19 -7.30 16 23 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.34 6.73 7.84 -89.70 -0.70 6.02 16 29 H 0.36 4.71 9.08 -89.70 -0.81 3.89 16 30 H 0.41 10.00 6.17 -92.71 -0.57 9.43 16 31 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 35 H 0.10 6.10 5.74 -2.91 -0.02 6.08 16 Total: -1.00 -71.19 297.31 0.84 -70.36 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.96 Total: 36.25 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.30 Total: -28.68 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -3.47 Total: -88.61 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.06 Total: -31.58 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -71.19 0.84 -70.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593905626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.145 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds