Wall clock time and date at job start Mon Mar 30 2020 18:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46506 * 109.46817 * 119.99917 * 2 1 3 13 13 C 1.34781 * 119.99571 * 275.00130 * 12 2 1 14 14 O 1.21622 * 120.00137 * 359.97438 * 13 12 2 15 15 C 1.47266 * 119.99603 * 180.02562 * 13 12 2 16 16 C 1.36766 * 126.94234 * 359.68357 * 15 13 12 17 17 N 1.34662 * 108.39504 * 179.87088 * 16 15 13 18 18 H 0.96996 * 124.84924 * 180.17222 * 17 16 15 19 19 C 1.36449 * 110.29973 * 0.40745 * 17 16 15 20 20 C 1.34492 * 108.85360 * 359.74982 * 19 17 16 21 21 C 1.50699 * 126.83359 * 180.02562 * 20 19 17 22 22 C 1.53000 * 117.49677 * 8.72688 * 21 20 19 23 23 C 1.52999 * 117.50146 * 300.06480 * 21 20 19 24 24 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 27 27 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00309 * 94.99751 * 12 2 1 29 29 H 1.08000 * 125.80487 * 359.97438 * 16 15 13 30 30 H 1.08001 * 125.57543 * 179.72915 * 19 17 16 31 31 H 1.09002 * 115.54766 * 154.38935 * 21 20 19 32 32 H 1.09004 * 117.50128 * 359.97438 * 22 21 20 33 33 H 1.09002 * 117.50018 * 145.02204 * 22 21 20 34 34 H 1.08999 * 117.49963 * 214.98052 * 23 21 20 35 35 H 1.09003 * 117.49495 * 359.97002 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8581 1.1620 2.4116 15 6 2.6382 -0.7122 3.5595 16 6 2.9969 -2.0282 3.6601 17 7 3.3925 -2.2653 4.9253 18 1 3.6998 -3.1229 5.2584 19 6 3.2944 -1.1282 5.6730 20 6 2.8358 -0.1333 4.8928 21 6 2.5771 1.2927 5.3059 22 6 3.0481 1.7217 6.6969 23 6 1.5548 1.5314 6.4190 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.9041 -0.5278 -4.4374 28 1 2.2489 -1.6318 1.1528 29 1 2.9693 -2.7535 2.8603 30 1 3.5438 -1.0413 6.7202 31 1 2.6319 2.0312 4.5060 32 1 3.5448 0.9724 7.3135 33 1 3.4123 2.7426 6.8124 34 1 0.9373 2.4270 6.3516 35 1 1.0691 0.6570 6.8521 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602821627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:28 Heat of formation + Delta-G solvation = 34.123141 kcal Electronic energy + Delta-G solvation = -17685.027581 eV Core-core repulsion = 14877.682830 eV Total energy + Delta-G solvation = -2807.344751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09603 -38.37119 -36.89055 -34.79379 -32.32642 -30.95732 -29.81063 -28.43377 -25.11680 -23.21383 -22.94066 -22.26252 -20.53821 -19.12970 -18.82149 -18.34232 -16.67316 -15.53898 -15.31996 -15.17473 -14.47404 -14.19493 -14.02235 -13.65721 -13.51533 -12.81717 -12.70833 -12.23143 -12.08005 -11.65568 -11.51181 -11.46432 -11.15720 -10.73847 -10.67433 -10.20377 -10.11031 -9.62700 -9.14756 -8.99637 -8.68846 -8.43753 -8.13111 -7.93904 -6.15488 -4.17091 2.05397 2.43250 3.25457 3.28773 3.40410 3.46655 4.03664 4.21447 4.27330 4.37877 4.76380 5.01005 5.09108 5.17681 5.20095 5.24351 5.41070 5.67015 5.79756 5.86981 6.00224 6.16229 6.19232 6.40998 6.48048 6.53666 6.66316 6.85872 6.98171 7.00587 7.32010 7.42495 7.49705 7.63613 8.28141 8.67847 8.83556 9.17113 9.46994 10.96813 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.005555 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.620500 B = 5039.307610 C = 5633.948209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.261 1.261 11 H -0.295 1.295 12 N -0.702 5.702 13 C 0.576 3.424 14 O -0.557 6.557 15 C -0.208 4.208 16 C 0.041 3.959 17 N -0.553 5.553 18 H 0.415 0.585 19 C -0.029 4.029 20 C -0.080 4.080 21 C -0.071 4.071 22 C -0.184 4.184 23 C -0.173 4.173 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.391 0.609 29 H 0.174 0.826 30 H 0.164 0.836 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -2.650 19.199 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.186 1.186 11 H -0.223 1.223 12 N -0.350 5.350 13 C 0.363 3.637 14 O -0.437 6.437 15 C -0.218 4.218 16 C -0.095 4.095 17 N -0.147 5.147 18 H 0.251 0.749 19 C -0.157 4.157 20 C -0.086 4.086 21 C -0.090 4.090 22 C -0.221 4.221 23 C -0.210 4.210 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.224 0.776 29 H 0.191 0.809 30 H 0.181 0.819 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.487 -1.916 19.061 19.214 hybrid contribution -0.346 -0.259 -0.189 0.472 sum 1.141 -2.175 18.872 19.031 Atomic orbital electron populations 1.22442 0.99441 1.00725 0.99237 1.19059 0.90030 0.94721 0.82782 0.93367 1.21061 1.33005 1.14300 0.88612 0.90304 1.24831 0.95530 0.96712 0.95526 1.69874 1.45132 1.40226 0.98003 0.86870 0.80486 0.83703 0.77393 1.20364 1.18558 1.22262 1.46026 1.65760 1.13499 1.09682 1.17417 0.77720 0.86315 0.82261 1.90680 1.52040 1.15763 1.85212 1.20602 1.12918 0.93417 0.94886 1.21997 1.02615 0.97348 0.87495 1.41400 1.52636 1.11494 1.09203 0.74896 1.21377 1.10858 0.85917 0.97512 1.19638 1.03853 0.93443 0.91708 1.20401 1.02885 0.93744 0.91933 1.22991 0.97430 1.02175 0.99528 1.22962 0.91893 1.03020 1.03144 0.93612 0.92956 0.94462 0.92381 0.77631 0.80903 0.81910 0.85784 0.89263 0.88839 0.88838 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 8.96 37.16 0.33 -3.39 16 2 C 0.24 5.88 2.15 -69.08 -0.15 5.73 16 3 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 4 C -0.53 -14.64 9.31 -34.44 -0.32 -14.96 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 8 Si 0.89 22.24 24.37 -169.99 -4.14 18.09 16 9 H -0.28 -6.72 6.87 56.52 0.39 -6.33 16 10 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 12 N -0.70 -14.71 5.06 -56.06 -0.28 -14.99 16 13 C 0.58 11.99 7.77 -12.59 -0.10 11.89 16 14 O -0.56 -13.43 15.07 5.26 0.08 -13.35 16 15 C -0.21 -3.46 6.29 -103.35 -0.65 -4.11 16 16 C 0.04 0.51 11.40 -16.84 -0.19 0.31 16 17 N -0.55 -5.32 5.90 -12.84 -0.08 -5.39 16 18 H 0.41 2.34 8.96 -40.82 -0.37 1.98 16 19 C -0.03 -0.32 11.26 -16.82 -0.19 -0.51 16 20 C -0.08 -1.19 6.02 -102.54 -0.62 -1.80 16 21 C -0.07 -1.04 5.78 -91.77 -0.53 -1.57 16 22 C -0.18 -2.01 10.03 -26.69 -0.27 -2.27 16 23 C -0.17 -2.08 10.24 -26.69 -0.27 -2.36 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.39 7.09 7.48 -40.82 -0.31 6.78 16 29 H 0.17 1.71 7.45 -52.49 -0.39 1.32 16 30 H 0.16 1.31 7.16 -52.49 -0.38 0.94 16 31 H 0.12 2.16 7.03 -51.93 -0.37 1.79 16 32 H 0.09 0.82 7.00 -51.93 -0.36 0.45 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -33.95 291.53 -6.70 -40.65 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.39 Total: 7.57 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.05 Total: -10.93 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.41 Total: -46.42 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.95 -6.70 -40.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.774 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds