Wall clock time and date at job start Mon Mar 30 2020 18:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46506 * 109.46817 * 119.99917 * 2 1 3 13 13 C 1.34781 * 119.99571 * 275.00130 * 12 2 1 14 14 O 1.21622 * 120.00137 * 359.97438 * 13 12 2 15 15 C 1.47266 * 119.99603 * 180.02562 * 13 12 2 16 16 C 1.36766 * 126.94234 * 359.68357 * 15 13 12 17 17 N 1.34662 * 108.39504 * 179.87088 * 16 15 13 18 18 H 0.96996 * 124.84924 * 180.17222 * 17 16 15 19 19 C 1.36449 * 110.29973 * 0.40745 * 17 16 15 20 20 C 1.34492 * 108.85360 * 359.74982 * 19 17 16 21 21 C 1.50699 * 126.83359 * 180.02562 * 20 19 17 22 22 C 1.53000 * 117.49677 * 8.72688 * 21 20 19 23 23 C 1.52999 * 117.50146 * 300.06480 * 21 20 19 24 24 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 25 25 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 27 27 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00309 * 94.99751 * 12 2 1 29 29 H 1.08000 * 125.80487 * 359.97438 * 16 15 13 30 30 H 1.08001 * 125.57543 * 179.72915 * 19 17 16 31 31 H 1.09002 * 115.54766 * 154.38935 * 21 20 19 32 32 H 1.09004 * 117.50128 * 359.97438 * 22 21 20 33 33 H 1.09002 * 117.50018 * 145.02204 * 22 21 20 34 34 H 1.08999 * 117.49963 * 214.98052 * 23 21 20 35 35 H 1.09003 * 117.49495 * 359.97002 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8581 1.1620 2.4116 15 6 2.6382 -0.7122 3.5595 16 6 2.9969 -2.0282 3.6601 17 7 3.3925 -2.2653 4.9253 18 1 3.6998 -3.1229 5.2584 19 6 3.2944 -1.1282 5.6730 20 6 2.8358 -0.1333 4.8928 21 6 2.5771 1.2927 5.3059 22 6 3.0481 1.7217 6.6969 23 6 1.5548 1.5314 6.4190 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.9041 -0.5278 -4.4374 28 1 2.2489 -1.6318 1.1528 29 1 2.9693 -2.7535 2.8603 30 1 3.5438 -1.0413 6.7202 31 1 2.6319 2.0312 4.5060 32 1 3.5448 0.9724 7.3135 33 1 3.4123 2.7426 6.8124 34 1 0.9373 2.4270 6.3516 35 1 1.0691 0.6570 6.8521 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602821627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:28 Heat of formation + Delta-G solvation = 9.459444 kcal Electronic energy + Delta-G solvation = -17686.097079 eV Core-core repulsion = 14877.682830 eV Total energy + Delta-G solvation = -2808.414249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10018 -40.01442 -37.84213 -36.69423 -34.36502 -32.42091 -31.15385 -29.61170 -27.21025 -24.59117 -24.01267 -23.16086 -22.23698 -20.71975 -19.90779 -19.34889 -18.55689 -17.31069 -17.03505 -16.18801 -15.80873 -15.77925 -15.13143 -15.03533 -14.81992 -14.61463 -14.21504 -14.12432 -13.59623 -13.22394 -13.05417 -12.77404 -12.51603 -12.31590 -12.13367 -11.63190 -11.60553 -11.26430 -11.19297 -10.85950 -10.64547 -9.89090 -9.38885 -9.05368 -8.37430 -6.42351 0.87771 1.27160 1.35520 1.46007 1.47229 2.27291 2.40161 2.65730 2.68529 2.99348 3.21072 3.81661 4.04721 4.20450 4.26078 4.31568 4.36870 4.47306 4.55671 4.70128 4.76069 4.82147 4.88434 5.00408 5.06389 5.21635 5.31954 5.34911 5.42905 5.47471 5.72502 5.81609 6.00251 6.19367 6.58591 6.75410 7.01946 7.22273 7.60282 8.77750 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.005555 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.620500 B = 5039.307610 C = 5633.948209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.243 3.757 3 H 0.017 0.983 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.936 3.064 9 H -0.258 1.258 10 H -0.267 1.267 11 H -0.291 1.291 12 N -0.701 5.701 13 C 0.572 3.428 14 O -0.602 6.602 15 C -0.263 4.263 16 C 0.066 3.934 17 N -0.528 5.528 18 H 0.439 0.561 19 C -0.005 4.005 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.270 0.730 28 H 0.404 0.596 29 H 0.199 0.801 30 H 0.204 0.796 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -4.069 21.862 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.138 3.862 3 H 0.035 0.965 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.572 5.572 8 Si 0.764 3.236 9 H -0.184 1.184 10 H -0.192 1.192 11 H -0.218 1.218 12 N -0.349 5.349 13 C 0.362 3.638 14 O -0.486 6.486 15 C -0.273 4.273 16 C -0.072 4.072 17 N -0.124 5.124 18 H 0.280 0.720 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.191 4.191 23 C -0.208 4.208 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.239 0.761 29 H 0.215 0.785 30 H 0.220 0.780 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.609 -3.391 21.763 22.085 hybrid contribution -0.291 0.126 -0.945 0.997 sum 1.318 -3.265 20.818 21.114 Atomic orbital electron populations 1.22326 0.97976 1.01632 0.99164 1.18719 0.91115 0.93045 0.83327 0.96517 1.21243 1.32234 1.13554 0.89779 0.92261 1.25508 0.96810 0.99190 0.95359 1.69966 1.46712 1.41896 0.98596 0.86041 0.79958 0.80542 0.77053 1.18393 1.19222 1.21782 1.45829 1.66158 1.14045 1.08894 1.18075 0.76651 0.85937 0.83114 1.90644 1.54068 1.17857 1.85983 1.20410 1.17139 0.95579 0.94194 1.22221 0.99988 0.95983 0.88995 1.41422 1.50613 1.12391 1.07983 0.71962 1.21812 1.08010 0.84851 0.98619 1.19833 1.05879 0.94362 0.91731 1.20244 1.06524 0.93356 0.92437 1.23107 0.96381 1.03242 0.96397 1.23024 0.92721 1.03318 1.01751 0.94091 0.91501 0.94040 0.92040 0.76058 0.78460 0.77955 0.90320 0.86423 0.88217 0.89257 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.07 8.96 71.98 0.65 -6.42 16 2 C 0.24 12.25 2.15 44.24 0.10 12.35 16 3 H 0.02 0.96 6.63 -2.39 -0.02 0.94 16 4 C -0.53 -29.69 9.31 25.60 0.24 -29.46 16 5 H 0.06 3.48 7.98 -2.91 -0.02 3.46 16 6 C 0.03 1.79 5.45 84.65 0.46 2.25 16 7 N -0.93 -56.55 13.96 21.45 0.30 -56.25 16 8 Si 0.94 46.15 24.37 68.60 1.67 47.82 16 9 H -0.26 -11.91 6.87 99.48 0.68 -11.22 16 10 H -0.27 -13.36 6.53 99.48 0.65 -12.71 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 12 N -0.70 -29.85 5.06 -449.52 -2.27 -32.12 16 13 C 0.57 24.55 7.77 86.62 0.67 25.22 16 14 O -0.60 -30.71 15.07 -4.10 -0.06 -30.77 16 15 C -0.26 -8.63 6.29 -19.04 -0.12 -8.75 16 16 C 0.07 1.47 11.40 83.91 0.96 2.42 16 17 N -0.53 -7.86 5.90 -194.55 -1.15 -9.01 16 18 H 0.44 2.60 8.96 -92.71 -0.83 1.77 16 19 C 0.00 -0.08 11.26 83.12 0.94 0.85 16 20 C -0.11 -3.19 6.02 -18.51 -0.11 -3.30 16 21 C -0.11 -3.14 5.78 -11.54 -0.07 -3.20 16 22 C -0.15 -3.02 10.03 30.62 0.31 -2.71 16 23 C -0.17 -3.94 10.24 30.62 0.31 -3.62 16 24 H 0.04 1.91 3.27 -2.39 -0.01 1.90 16 25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.40 14.63 7.48 -92.71 -0.69 13.93 16 29 H 0.20 3.26 7.45 -2.91 -0.02 3.24 16 30 H 0.20 2.03 7.16 -2.91 -0.02 2.01 16 31 H 0.08 2.99 7.03 -2.39 -0.02 2.97 16 32 H 0.12 1.61 7.00 -2.38 -0.02 1.60 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -77.32 291.53 2.34 -74.98 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.48 Total: 19.72 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.33 Total: -14.38 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.12 Total: -97.37 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.06 Total: -30.77 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.82 kcal Total: -77.32 2.34 -74.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.442 kcal (2) G-P(sol) polarization free energy of solvation -77.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds