Wall clock time and date at job start Mon Mar 30 2020 18:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47360 * 2 1 4 4 C 1.53002 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46836 * 304.99395 * 4 3 2 6 6 N 1.46499 * 109.47488 * 64.99647 * 4 3 2 7 7 C 1.34774 * 119.99651 * 275.00261 * 6 4 3 8 8 O 1.21690 * 120.00717 * 359.97438 * 7 6 4 9 9 C 1.46375 * 119.99933 * 179.97438 * 7 6 4 10 10 H 1.08003 * 120.00082 * 353.93409 * 9 7 6 11 11 C 1.40045 * 120.00379 * 173.93826 * 9 7 6 12 12 N 1.30674 * 119.99822 * 6.14489 * 11 9 7 13 13 Si 1.86803 * 120.00328 * 186.15257 * 11 9 7 14 14 H 1.48497 * 109.47242 * 94.97842 * 13 11 9 15 15 H 1.48502 * 109.47169 * 214.98241 * 13 11 9 16 16 H 1.48503 * 109.46632 * 334.97795 * 13 11 9 17 17 C 1.50700 * 109.47196 * 184.99774 * 4 3 2 18 18 C 1.38227 * 119.61607 * 124.99714 * 17 4 3 19 19 C 1.38637 * 119.15704 * 179.97438 * 18 17 4 20 20 C 1.38669 * 118.42301 * 359.97438 * 19 18 17 21 21 C 1.38190 * 119.15961 * 0.28443 * 20 19 18 22 22 N 1.31850 * 119.61877 * 304.97507 * 17 4 3 23 23 H 1.08997 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47013 * 300.00502 * 1 2 3 25 25 H 1.08996 * 109.47179 * 60.00087 * 1 2 3 26 26 H 1.09001 * 109.47013 * 239.99498 * 2 1 3 27 27 H 1.09005 * 109.47317 * 119.99785 * 2 1 3 28 28 H 1.09001 * 109.47468 * 59.99776 * 3 2 1 29 29 H 1.09006 * 109.46738 * 299.99591 * 3 2 1 30 30 H 0.96997 * 120.00041 * 94.99916 * 6 4 3 31 31 H 0.96999 * 120.00136 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.42497 * 359.97438 * 18 17 4 33 33 H 1.08001 * 120.78648 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.41982 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.61229 * 179.70122 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 7 4.0579 0.8588 -1.2527 7 6 4.1865 -0.4778 -1.3679 8 8 3.8979 -1.2000 -0.4319 9 6 4.6734 -1.0611 -2.6190 10 1 4.8364 -0.4311 -3.4811 11 6 4.9280 -2.4359 -2.6984 12 7 4.6184 -3.2165 -1.6972 13 14 5.7103 -3.1538 -4.2353 14 1 7.1795 -3.2522 -4.0432 15 1 5.1525 -4.5065 -4.4890 16 1 5.4206 -2.2734 -5.3956 17 6 4.0724 2.8578 0.1231 18 6 4.9504 3.1846 1.1396 19 6 5.4070 4.4894 1.2442 20 6 4.9619 5.4207 0.3182 21 6 4.0796 5.0214 -0.6676 22 7 3.6699 3.7700 -0.7396 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9562 -0.8901 30 1 4.2883 1.4343 -1.9987 31 1 4.7950 -4.1687 -1.7520 32 1 5.2765 2.4330 1.8433 33 1 6.0937 4.7736 2.0279 34 1 5.2973 6.4460 0.3693 35 1 3.7245 5.7418 -1.3896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613934882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:47 Heat of formation + Delta-G solvation = -18.575412 kcal Electronic energy + Delta-G solvation = -17918.368406 eV Core-core repulsion = 15108.738474 eV Total energy + Delta-G solvation = -2809.629932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14553 -37.66859 -34.82481 -32.65952 -32.41405 -32.14830 -30.79552 -28.00929 -25.93640 -24.17632 -23.36729 -21.38942 -20.36847 -19.21870 -17.45986 -16.47246 -16.08156 -15.40531 -15.24650 -14.72321 -14.25524 -14.00981 -13.40377 -13.34408 -12.95809 -12.88379 -12.31819 -12.20809 -11.68957 -11.55812 -11.11528 -10.98489 -10.80245 -10.70276 -10.42366 -10.19813 -10.06852 -9.75858 -9.70972 -9.23835 -8.89628 -8.79343 -7.54114 -7.38143 -6.15684 -4.58885 1.21924 1.39595 3.16069 3.23672 3.27209 3.90498 4.15708 4.45890 4.63269 4.78540 4.90042 5.10182 5.15771 5.29211 5.58649 5.66348 5.80375 5.81198 5.90706 5.95251 6.05248 6.17553 6.24224 6.32233 6.41658 6.54073 6.66428 6.77063 6.86980 7.13368 7.44557 7.48033 7.99382 8.12338 8.20721 8.39467 9.06983 9.59584 10.63293 10.82465 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.006571 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.735841 B = 4260.253219 C = 5051.828879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.204 3.796 5 H 0.088 0.912 6 N -0.753 5.753 7 C 0.558 3.442 8 O -0.573 6.573 9 C -0.545 4.545 10 H 0.066 0.934 11 C 0.090 3.910 12 N -0.767 5.767 13 Si 0.904 3.096 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.136 3.864 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.185 4.185 21 C 0.097 3.903 22 N -0.471 5.471 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.383 0.617 31 H 0.267 0.733 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 13.419 3.637 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.153 4.153 4 C 0.097 3.903 5 H 0.106 0.894 6 N -0.408 5.408 7 C 0.362 3.638 8 O -0.456 6.456 9 C -0.582 4.582 10 H 0.084 0.916 11 C -0.130 4.130 12 N -0.396 5.396 13 Si 0.729 3.271 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.002 4.002 18 C -0.182 4.182 19 C -0.104 4.104 20 C -0.205 4.205 21 C -0.061 4.061 22 N -0.181 5.181 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.214 0.786 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.401 12.422 3.751 13.051 hybrid contribution 1.192 0.367 -0.416 1.315 sum -0.209 12.789 3.335 13.218 Atomic orbital electron populations 1.21795 0.97773 1.00706 1.00227 1.21579 0.93247 0.95870 1.04727 1.21915 0.94876 0.97668 1.00824 1.19503 0.93507 0.85615 0.91667 0.89434 1.46177 1.72941 1.08348 1.13309 1.18139 0.77607 0.78817 0.89215 1.90603 1.54108 1.59261 1.41612 1.20882 1.47265 0.93021 0.97069 0.91591 1.25656 0.93735 0.96939 0.96634 1.70019 1.35194 1.04575 1.29789 0.86414 0.79598 0.78629 0.82449 1.19916 1.20499 1.18938 1.21736 0.92261 0.96053 0.90131 1.22071 0.98659 0.97271 1.00207 1.21546 0.97777 0.93057 0.97984 1.22077 1.00442 1.00646 0.97324 1.22761 0.93925 0.92899 0.96502 1.67521 1.23598 1.01529 1.25405 0.93317 0.94060 0.93615 0.89626 0.91945 0.93500 0.91749 0.78556 0.92231 0.84710 0.85121 0.85246 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 37.15 0.37 -2.17 16 2 C -0.12 -2.42 4.53 -26.74 -0.12 -2.54 16 3 C -0.11 -2.13 4.70 -26.73 -0.13 -2.26 16 4 C 0.20 4.03 2.57 -69.08 -0.18 3.85 16 5 H 0.09 1.86 7.30 -51.93 -0.38 1.48 16 6 N -0.75 -17.14 5.02 -56.34 -0.28 -17.42 16 7 C 0.56 15.42 6.31 -12.99 -0.08 15.34 16 8 O -0.57 -17.39 12.18 5.20 0.06 -17.32 16 9 C -0.55 -15.37 9.53 -35.63 -0.34 -15.71 16 10 H 0.07 1.75 7.85 -52.48 -0.41 1.33 16 11 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 12 N -0.77 -22.65 11.85 55.55 0.66 -21.99 16 13 Si 0.90 20.27 29.56 -169.99 -5.03 15.24 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 17 C 0.14 2.30 5.62 -82.59 -0.46 1.84 16 18 C -0.16 -2.33 9.71 -39.44 -0.38 -2.71 16 19 C -0.08 -0.90 10.18 -39.27 -0.40 -1.30 16 20 C -0.18 -2.03 10.11 -39.44 -0.40 -2.43 16 21 C 0.10 1.23 11.18 -17.55 -0.20 1.03 16 22 N -0.47 -7.62 9.95 -9.47 -0.09 -7.72 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.14 5.64 -51.93 -0.29 1.85 16 27 H 0.06 1.38 7.84 -51.93 -0.41 0.98 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 30 H 0.38 8.31 8.55 -40.82 -0.35 7.96 16 31 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 32 H 0.13 1.80 7.95 -52.49 -0.42 1.38 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -32.45 298.01 -7.38 -39.83 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.77 Total: 9.53 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.42 Total: -4.65 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.28 Total: -47.13 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.06 Total: -17.32 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.45 -7.38 -39.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613934882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.255 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds