Wall clock time and date at job start Mon Mar 30 2020 18:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47360 * 2 1 4 4 C 1.53002 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46836 * 304.99395 * 4 3 2 6 6 N 1.46499 * 109.47488 * 64.99647 * 4 3 2 7 7 C 1.34774 * 119.99651 * 275.00261 * 6 4 3 8 8 O 1.21690 * 120.00717 * 359.97438 * 7 6 4 9 9 C 1.46375 * 119.99933 * 179.97438 * 7 6 4 10 10 H 1.08003 * 120.00082 * 353.93409 * 9 7 6 11 11 C 1.40045 * 120.00379 * 173.93826 * 9 7 6 12 12 N 1.30674 * 119.99822 * 6.14489 * 11 9 7 13 13 Si 1.86803 * 120.00328 * 186.15257 * 11 9 7 14 14 H 1.48497 * 109.47242 * 94.97842 * 13 11 9 15 15 H 1.48502 * 109.47169 * 214.98241 * 13 11 9 16 16 H 1.48503 * 109.46632 * 334.97795 * 13 11 9 17 17 C 1.50700 * 109.47196 * 184.99774 * 4 3 2 18 18 C 1.38227 * 119.61607 * 124.99714 * 17 4 3 19 19 C 1.38637 * 119.15704 * 179.97438 * 18 17 4 20 20 C 1.38669 * 118.42301 * 359.97438 * 19 18 17 21 21 C 1.38190 * 119.15961 * 0.28443 * 20 19 18 22 22 N 1.31850 * 119.61877 * 304.97507 * 17 4 3 23 23 H 1.08997 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47013 * 300.00502 * 1 2 3 25 25 H 1.08996 * 109.47179 * 60.00087 * 1 2 3 26 26 H 1.09001 * 109.47013 * 239.99498 * 2 1 3 27 27 H 1.09005 * 109.47317 * 119.99785 * 2 1 3 28 28 H 1.09001 * 109.47468 * 59.99776 * 3 2 1 29 29 H 1.09006 * 109.46738 * 299.99591 * 3 2 1 30 30 H 0.96997 * 120.00041 * 94.99916 * 6 4 3 31 31 H 0.96999 * 120.00136 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.42497 * 359.97438 * 18 17 4 33 33 H 1.08001 * 120.78648 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.41982 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.61229 * 179.70122 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 7 4.0579 0.8588 -1.2527 7 6 4.1865 -0.4778 -1.3679 8 8 3.8979 -1.2000 -0.4319 9 6 4.6734 -1.0611 -2.6190 10 1 4.8364 -0.4311 -3.4811 11 6 4.9280 -2.4359 -2.6984 12 7 4.6184 -3.2165 -1.6972 13 14 5.7103 -3.1538 -4.2353 14 1 7.1795 -3.2522 -4.0432 15 1 5.1525 -4.5065 -4.4890 16 1 5.4206 -2.2734 -5.3956 17 6 4.0724 2.8578 0.1231 18 6 4.9504 3.1846 1.1396 19 6 5.4070 4.4894 1.2442 20 6 4.9619 5.4207 0.3182 21 6 4.0796 5.0214 -0.6676 22 7 3.6699 3.7700 -0.7396 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9562 -0.8901 30 1 4.2883 1.4343 -1.9987 31 1 4.7950 -4.1687 -1.7520 32 1 5.2765 2.4330 1.8433 33 1 6.0937 4.7736 2.0279 34 1 5.2973 6.4460 0.3693 35 1 3.7245 5.7418 -1.3896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613934882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:45 Heat of formation + Delta-G solvation = -41.021772 kcal Electronic energy + Delta-G solvation = -17919.341753 eV Core-core repulsion = 15108.738474 eV Total energy + Delta-G solvation = -2810.603279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.29964 -39.52114 -36.60669 -34.56326 -34.16322 -33.28045 -32.25757 -29.56555 -27.96036 -25.51567 -24.40755 -22.78952 -22.13626 -21.01930 -19.30983 -17.72976 -17.43810 -17.22232 -16.53242 -16.24674 -15.87693 -15.70668 -14.87337 -14.65666 -14.44852 -14.10608 -13.98253 -13.80035 -13.33316 -13.06398 -12.76634 -12.67658 -12.56331 -12.42178 -12.22686 -12.00046 -11.62840 -11.41340 -10.89102 -10.78207 -10.35311 -10.01670 -9.66119 -9.32370 -8.25521 -6.79985 0.16527 0.41162 1.39459 1.40191 1.55458 2.25656 2.52276 2.81219 3.28196 3.31389 3.67965 3.75487 4.07286 4.17744 4.21001 4.25831 4.32265 4.35664 4.54919 4.68877 4.78777 4.81570 4.87447 5.00443 5.06444 5.24103 5.29006 5.33534 5.34933 5.46022 5.68230 5.83502 5.93782 6.24213 6.34504 6.91258 7.10782 7.59061 8.54996 8.72668 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.006571 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.735841 B = 4260.253219 C = 5051.828879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.101 4.101 4 C 0.204 3.796 5 H 0.061 0.939 6 N -0.743 5.743 7 C 0.548 3.452 8 O -0.610 6.610 9 C -0.578 4.578 10 H 0.076 0.924 11 C 0.035 3.965 12 N -0.817 5.817 13 Si 0.991 3.009 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.253 1.253 17 C 0.109 3.891 18 C -0.175 4.175 19 C -0.073 4.073 20 C -0.166 4.166 21 C 0.087 3.913 22 N -0.499 5.499 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.388 0.612 31 H 0.273 0.727 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 16.069 3.014 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.140 4.140 4 C 0.098 3.902 5 H 0.079 0.921 6 N -0.397 5.397 7 C 0.352 3.648 8 O -0.496 6.496 9 C -0.615 4.615 10 H 0.094 0.906 11 C -0.180 4.180 12 N -0.446 5.446 13 Si 0.811 3.189 14 H -0.188 1.188 15 H -0.196 1.196 16 H -0.177 1.177 17 C -0.028 4.028 18 C -0.195 4.195 19 C -0.098 4.098 20 C -0.185 4.185 21 C -0.071 4.071 22 N -0.209 5.209 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.184 0.816 34 H 0.190 0.810 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.755 15.119 3.132 15.459 hybrid contribution 0.993 -0.295 -0.160 1.048 sum 0.237 14.824 2.972 15.121 Atomic orbital electron populations 1.21719 0.94691 1.01257 1.02014 1.21412 0.95957 0.96435 1.01043 1.21777 0.94239 0.96245 1.01717 1.19479 0.94110 0.87606 0.88987 0.92086 1.45883 1.72052 1.07027 1.14694 1.18349 0.77292 0.80227 0.88960 1.90562 1.55622 1.60699 1.42697 1.21375 1.48106 0.94217 0.97753 0.90559 1.26810 0.93675 0.97016 1.00536 1.70169 1.36548 1.05225 1.32685 0.85111 0.78569 0.77822 0.77432 1.18849 1.19608 1.17681 1.21193 0.94675 0.94568 0.92355 1.22169 0.98563 0.99039 0.99770 1.21966 0.97470 0.91615 0.98783 1.22551 0.98269 1.02359 0.95362 1.23351 0.94091 0.91982 0.97670 1.67398 1.24745 1.02948 1.25776 0.93471 0.91393 0.92570 0.94496 0.94463 0.91183 0.91825 0.77989 0.91695 0.84860 0.81621 0.81015 0.80164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.91 71.98 0.71 -4.08 16 2 C -0.11 -4.83 4.53 30.59 0.14 -4.70 16 3 C -0.10 -3.89 4.70 30.59 0.14 -3.74 16 4 C 0.20 8.45 2.57 44.25 0.11 8.57 16 5 H 0.06 2.81 7.30 -2.39 -0.02 2.79 16 6 N -0.74 -35.50 5.02 -450.40 -2.26 -37.76 16 7 C 0.55 31.97 6.31 86.36 0.54 32.52 16 8 O -0.61 -39.50 12.18 -4.32 -0.05 -39.55 16 9 C -0.58 -33.67 9.53 24.83 0.24 -33.43 16 10 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 11 C 0.03 1.98 5.49 85.30 0.47 2.45 16 12 N -0.82 -50.13 11.85 21.84 0.26 -49.87 16 13 Si 0.99 42.08 29.56 68.60 2.03 44.11 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 16 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 17 C 0.11 3.69 5.62 42.55 0.24 3.93 16 18 C -0.17 -4.90 9.71 22.36 0.22 -4.68 16 19 C -0.07 -1.45 10.18 22.47 0.23 -1.22 16 20 C -0.17 -2.91 10.11 22.36 0.23 -2.69 16 21 C 0.09 1.94 11.18 84.67 0.95 2.89 16 22 N -0.50 -15.58 9.95 -183.89 -1.83 -17.41 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 27 H 0.04 1.76 7.84 -2.38 -0.02 1.74 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.06 2.45 8.08 -2.38 -0.02 2.43 16 30 H 0.39 17.46 8.55 -92.71 -0.79 16.67 16 31 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 32 H 0.13 3.62 7.95 -2.91 -0.02 3.60 16 33 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -75.28 298.01 2.66 -72.62 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.30 Total: 32.05 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.22 Total: -4.19 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.83 Total: -105.04 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.05 Total: -39.55 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -75.28 2.66 -72.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613934882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.601 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds