Wall clock time and date at job start Mon Mar 30 2020 18:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 O 1.21274 * 120.00042 * 359.72068 * 5 4 2 7 7 N 1.34777 * 119.99766 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00266 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47317 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00370 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99980 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99622 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47409 * 59.99864 * 13 11 9 15 15 H 1.48506 * 109.46650 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47066 * 299.99495 * 13 11 9 17 17 C 1.50707 * 109.46958 * 119.99836 * 2 1 3 18 18 C 1.38655 * 120.78783 * 59.71991 * 17 2 1 19 19 C 1.38204 * 119.16179 * 179.75216 * 18 17 2 20 20 N 1.31868 * 120.76133 * 0.53705 * 19 18 17 21 21 C 1.31869 * 121.72854 * 359.73253 * 20 19 18 22 22 C 1.38201 * 120.76333 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 24 24 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 25 25 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 27 27 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 28 28 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 29 29 H 1.09004 * 109.47212 * 300.00463 * 8 7 5 30 30 H 1.09000 * 109.46684 * 60.00307 * 8 7 5 31 31 H 0.97002 * 119.99804 * 179.97438 * 12 11 9 32 32 H 1.08004 * 120.41671 * 0.02562 * 18 17 2 33 33 H 1.07992 * 119.61755 * 180.24755 * 19 18 17 34 34 H 1.08000 * 119.62206 * 180.02562 * 21 20 19 35 35 H 1.08007 * 120.41760 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0070 1.0845 -2.3635 7 7 1.9853 -0.3914 -3.7001 8 6 1.5973 0.3649 -4.8932 9 6 2.0997 -0.3455 -6.1237 10 1 2.6524 -1.2683 -6.0267 11 6 1.8538 0.1827 -7.3733 12 7 1.1804 1.3061 -7.4915 13 14 2.4760 -0.6983 -8.8985 14 1 1.8833 -2.0585 -8.9610 15 1 2.0827 0.0685 -10.1080 16 1 3.9559 -0.8054 -8.8392 17 6 2.0323 -0.7104 1.2305 18 6 1.7026 -2.0359 1.4691 19 6 2.1860 -2.6560 2.6057 20 7 2.9429 -1.9988 3.4625 21 6 3.2720 -0.7363 3.2707 22 6 2.8306 -0.0526 2.1538 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6053 -1.7199 -1.2951 27 1 3.1263 -0.7995 -1.2056 28 1 2.4891 -1.2153 -3.7907 29 1 0.5109 0.4424 -4.9370 30 1 2.0313 1.3637 -4.8473 31 1 1.0077 1.6779 -8.3707 32 1 1.0796 -2.5782 0.7732 33 1 1.9371 -3.6893 2.7968 34 1 3.8943 -0.2310 3.9945 35 1 3.1031 0.9815 2.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787623432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:56 Heat of formation + Delta-G solvation = -23.992256 kcal Electronic energy + Delta-G solvation = -17102.246563 eV Core-core repulsion = 14292.381739 eV Total energy + Delta-G solvation = -2809.864824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45420 -38.98719 -35.70223 -34.15834 -32.36879 -31.39987 -30.95699 -28.42496 -26.55737 -24.37298 -23.53953 -22.56864 -20.65076 -19.53274 -17.40838 -16.64450 -16.34944 -15.74717 -15.44892 -15.17348 -14.99346 -14.34112 -14.10752 -13.80363 -13.49759 -13.32927 -12.83229 -12.38324 -12.04174 -11.95135 -11.83254 -11.24161 -11.22207 -11.01229 -10.86727 -10.76570 -10.33557 -9.66192 -9.57719 -9.43975 -9.28946 -9.00521 -8.75545 -7.91158 -6.19309 -4.26507 1.00171 1.13161 3.23302 3.28291 3.29658 3.32594 3.67443 4.00680 4.31532 4.32838 4.58970 4.65620 4.94313 5.01491 5.04687 5.12871 5.16902 5.32658 5.52985 5.62570 5.68022 5.69120 5.76714 5.87668 6.01397 6.11756 6.39060 6.51834 6.58752 7.27157 7.40761 7.48417 7.63252 7.82972 7.94331 8.59181 8.74609 9.06575 9.40291 10.90826 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.046368 B = 0.003739 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.720225 B = 7486.237706 C = 7759.950597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.498 3.502 6 O -0.554 6.554 7 N -0.713 5.713 8 C 0.249 3.751 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.026 4.026 18 C -0.168 4.168 19 C 0.096 3.904 20 N -0.494 5.494 21 C 0.097 3.903 22 C -0.171 4.171 23 H 0.050 0.950 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.390 0.610 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -6.277 17.193 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 H 0.109 0.891 4 C -0.175 4.175 5 C 0.283 3.717 6 O -0.434 6.434 7 N -0.361 5.361 8 C 0.129 3.871 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.034 4.034 18 C -0.188 4.188 19 C -0.060 4.060 20 N -0.204 5.204 21 C -0.060 4.060 22 C -0.190 4.190 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.223 0.777 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.180 -5.825 17.836 18.889 hybrid contribution 0.300 -0.407 -1.736 1.808 sum 2.480 -6.232 16.100 17.441 Atomic orbital electron populations 1.21960 0.93200 1.01775 1.03608 1.19935 0.97146 0.99343 0.89216 0.89123 1.21740 1.02573 1.00174 0.93001 1.20385 0.80428 0.85986 0.84879 1.90621 1.40816 1.25189 1.86743 1.46494 1.55486 1.27256 1.06842 1.19098 0.96210 0.91847 0.79973 1.21197 1.37097 1.09263 0.90790 0.91964 1.24955 0.94849 0.94948 0.99242 1.69964 1.38884 1.18990 1.24458 0.86473 0.79233 0.79535 0.81658 1.20049 1.21045 1.20050 1.20469 0.93560 0.93874 0.95490 1.22058 1.01954 0.95404 0.99396 1.22734 0.93205 0.99860 0.90210 1.67657 1.12759 1.09289 1.30647 1.22732 0.96968 0.90430 0.95856 1.22135 0.99530 1.01687 0.95697 0.93049 0.89367 0.93150 0.89235 0.89377 0.77713 0.95537 0.95560 0.92366 0.84758 0.82928 0.82928 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.75 37.16 0.33 -1.59 16 2 C -0.04 -0.47 2.24 -91.77 -0.21 -0.67 16 3 H 0.09 1.23 7.76 -51.93 -0.40 0.83 16 4 C -0.13 -1.77 4.93 -27.88 -0.14 -1.90 16 5 C 0.50 9.33 7.55 -10.98 -0.08 9.25 16 6 O -0.55 -12.39 13.96 5.56 0.08 -12.31 16 7 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 8 C 0.25 6.50 5.43 -5.20 -0.03 6.47 16 9 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 10 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 13 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 17 C -0.03 -0.28 4.80 -104.31 -0.50 -0.78 16 18 C -0.17 -1.69 8.90 -39.44 -0.35 -2.04 16 19 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 20 N -0.49 -5.70 10.36 -13.26 -0.14 -5.84 16 21 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 22 C -0.17 -1.75 9.76 -39.44 -0.39 -2.13 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 1.42 5.94 -51.93 -0.31 1.11 16 25 H 0.05 0.57 7.47 -51.93 -0.39 0.19 16 26 H 0.09 1.00 7.68 -51.93 -0.40 0.61 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.39 6.81 8.32 -40.82 -0.34 6.47 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.13 1.14 7.35 -52.48 -0.39 0.75 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.16 8.01 -52.48 -0.42 0.74 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -31.94 300.58 -7.04 -38.98 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.71 Total: 4.16 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.17 Total: -5.14 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.26 Total: -45.86 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.94 -7.04 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.991 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds