Wall clock time and date at job start Mon Mar 30 2020 18:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.21284 * 119.99607 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00304 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99950 * 179.97438 * 10 8 7 12 12 C 1.50708 * 109.46882 * 179.97438 * 11 10 8 13 13 H 1.07994 * 119.99855 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99534 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00158 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99767 * 179.97438 * 14 12 11 17 17 H 1.48512 * 109.47214 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47067 * 119.99945 * 16 14 12 19 19 H 1.48502 * 109.47481 * 240.00462 * 16 14 12 20 20 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 21 21 C 1.31890 * 121.72233 * 359.70023 * 20 6 5 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 25 25 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 27 27 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 30 30 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 31 31 H 0.96997 * 120.00215 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.47158 * 299.99507 * 11 10 8 33 33 H 1.09001 * 109.47378 * 59.99788 * 11 10 8 34 34 H 0.97000 * 120.00081 * 179.97438 * 15 14 12 35 35 H 1.08003 * 119.61630 * 180.31786 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1347 4.4406 -1.4769 10 7 5.3222 6.6312 -1.1802 11 6 6.5405 6.6820 -1.9924 12 6 7.0423 8.1016 -2.0570 13 1 6.5070 8.8873 -1.5447 14 6 8.1847 8.3971 -2.7702 15 7 8.8362 7.4403 -3.3943 16 14 8.8063 10.1568 -2.8509 17 1 7.9008 11.0380 -2.0705 18 1 10.1755 10.2247 -2.2800 19 1 8.8370 10.6066 -4.2658 20 7 2.7045 3.3241 -1.1996 21 6 2.2705 2.0787 -1.1916 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0935 1.5922 2.1423 28 1 2.9203 3.9352 2.0592 29 1 2.6764 6.0389 -0.5961 30 1 3.6599 5.7574 0.8604 31 1 4.9689 7.4433 -0.7846 32 1 7.3036 6.0467 -1.5428 33 1 6.3206 6.3285 -2.9997 34 1 9.6397 7.6483 -3.8964 35 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834651778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:05 Heat of formation + Delta-G solvation = -22.520354 kcal Electronic energy + Delta-G solvation = -16935.380979 eV Core-core repulsion = 14125.579982 eV Total energy + Delta-G solvation = -2809.800997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35043 -38.47302 -35.02044 -34.04337 -32.39025 -32.11553 -31.27261 -28.22442 -26.62556 -23.88413 -23.54447 -22.33800 -21.08043 -19.58161 -17.17440 -16.68977 -16.16113 -15.60807 -15.38537 -14.90122 -14.60348 -14.12940 -14.05088 -13.90488 -13.32581 -12.97463 -12.81741 -12.40918 -12.28334 -12.03380 -11.88818 -11.47314 -11.35402 -11.14691 -10.90622 -10.86029 -10.28026 -9.69209 -9.33431 -9.24021 -8.99317 -8.69673 -8.62775 -7.79256 -6.13028 -4.19631 1.16179 1.40162 3.25628 3.32460 3.35663 3.49682 3.79838 4.23379 4.35776 4.44238 4.65777 4.70446 4.88239 4.95357 5.13147 5.20880 5.23019 5.27605 5.49107 5.54830 5.64406 5.65789 5.66607 5.85016 5.91042 5.97801 6.16920 6.29470 6.78386 7.37717 7.52567 7.58499 7.72261 8.01796 8.21493 8.70571 8.84193 9.20813 9.47285 10.97313 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.065725 B = 0.003571 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.913760 B = 7840.094968 C = 8057.706772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.077 4.077 5 C -0.167 4.167 6 C 0.148 3.852 7 C -0.096 4.096 8 C 0.504 3.496 9 O -0.539 6.539 10 N -0.716 5.716 11 C 0.251 3.749 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.450 5.450 21 C 0.107 3.893 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.389 0.611 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 -9.847 10.152 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.187 4.187 6 C 0.010 3.990 7 C -0.137 4.137 8 C 0.287 3.713 9 O -0.416 6.416 10 N -0.365 5.365 11 C 0.130 3.870 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.157 5.157 21 C -0.051 4.051 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.222 0.778 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.557 -10.178 8.854 20.592 hybrid contribution 0.204 0.921 0.905 1.308 sum -15.354 -9.257 9.759 20.413 Atomic orbital electron populations 1.21756 0.94747 1.01663 1.02214 1.20439 0.96032 0.92083 1.03068 1.20875 1.01848 0.97656 0.94431 1.21349 0.96782 0.94201 0.97937 1.21912 1.02042 0.96065 0.98698 1.20647 0.94414 0.95402 0.88514 1.20678 0.97739 0.93132 1.02177 1.20070 0.84896 0.84461 0.81844 1.90687 1.66614 1.34098 1.50237 1.46418 1.29130 1.08234 1.52754 1.19076 0.80443 0.97129 0.90355 1.21280 1.10503 0.93036 1.33141 0.91850 1.24964 0.96316 0.97826 0.95019 1.69989 1.18017 1.32143 1.32178 0.86366 0.78720 0.83937 0.77899 1.19634 1.20842 1.20812 1.67486 1.08906 1.08487 1.30859 1.22632 0.94623 0.90581 0.97287 0.92367 0.92696 0.92458 0.90714 0.91036 0.85212 0.84913 0.87556 0.87920 0.77814 0.95710 0.95587 0.92545 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.65 6.09 -27.88 -0.17 -0.82 16 3 C -0.15 -1.69 5.15 -104.48 -0.54 -2.23 16 4 C -0.08 -0.86 9.86 -39.28 -0.39 -1.24 16 5 C -0.17 -2.09 9.71 -39.44 -0.38 -2.47 16 6 C 0.15 2.33 5.76 -82.59 -0.48 1.85 16 7 C -0.10 -1.43 6.10 -29.03 -0.18 -1.61 16 8 C 0.50 10.52 7.76 -10.99 -0.09 10.44 16 9 O -0.54 -13.79 15.33 5.55 0.09 -13.70 16 10 N -0.72 -15.49 5.55 -61.47 -0.34 -15.83 16 11 C 0.25 6.84 5.43 -5.19 -0.03 6.81 16 12 C -0.54 -14.94 9.28 -34.43 -0.32 -15.26 16 13 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 16 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.45 -7.87 9.22 -9.47 -0.09 -7.95 16 21 C 0.11 1.52 10.86 -17.55 -0.19 1.33 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.13 1.28 7.95 -52.49 -0.42 0.86 16 29 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.10 1.16 7.87 -51.93 -0.41 0.75 16 31 H 0.39 7.07 8.32 -40.82 -0.34 6.73 16 32 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -35.00 306.81 -7.41 -42.41 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.92 Total: 2.46 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.48 Total: -2.24 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.31 Total: -49.63 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.00 -7.41 -42.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834651778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.888 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds