Wall clock time and date at job start Mon Mar 30 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 N 1.46500 * 109.46879 * 119.99774 * 2 1 3 5 5 C 1.39679 * 119.99953 * 304.60287 * 4 2 1 6 6 C 1.38905 * 120.07451 * 354.56426 * 5 4 2 7 7 C 1.38101 * 119.92553 * 179.97438 * 6 5 4 8 8 C 1.38286 * 120.07383 * 359.97438 * 7 6 5 9 9 C 1.38286 * 120.15308 * 0.02562 * 8 7 6 10 10 C 1.38106 * 120.06907 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47000 * 239.99478 * 2 1 3 12 12 O 1.21296 * 120.00244 * 25.00473 * 11 2 1 13 13 N 1.34773 * 119.99811 * 205.00303 * 11 2 1 14 14 C 1.37099 * 119.99728 * 180.02562 * 13 11 2 15 15 H 1.07998 * 120.00554 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99888 * 179.97438 * 14 13 11 17 17 N 1.31413 * 120.00270 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00228 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46896 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46874 * 120.00007 * 18 16 14 21 21 H 1.48499 * 109.47251 * 240.00079 * 18 16 14 22 22 H 1.09006 * 109.47080 * 305.00262 * 1 2 3 23 23 H 1.09001 * 109.46548 * 64.99783 * 1 2 3 24 24 H 1.08996 * 109.47535 * 185.00242 * 1 2 3 25 25 H 1.08994 * 109.47570 * 175.02435 * 3 2 1 26 26 H 1.09006 * 109.46718 * 295.02537 * 3 2 1 27 27 H 1.09002 * 109.47015 * 55.01909 * 3 2 1 28 28 H 0.96996 * 120.00220 * 124.59862 * 4 2 1 29 29 H 1.08005 * 120.03870 * 359.71344 * 6 5 4 30 30 H 1.07999 * 119.96633 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.92481 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.96852 * 180.02562 * 9 8 7 33 33 H 1.08001 * 120.03200 * 179.97438 * 10 9 8 34 34 H 0.96996 * 120.00560 * 359.97438 * 13 11 2 35 35 H 0.97003 * 120.00648 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6034 -0.2719 2.4626 6 6 0.8193 0.8667 2.5970 7 6 0.4103 1.2775 3.8505 8 6 0.7802 0.5564 4.9710 9 6 1.5608 -0.5776 4.8408 10 6 1.9732 -0.9940 3.5902 11 6 2.0323 -0.7105 -1.2304 12 8 1.3370 -0.7706 -2.2224 13 7 3.2543 -1.2791 -1.2285 14 6 3.7114 -1.9250 -2.3480 15 1 3.0923 -1.9786 -3.2313 16 6 4.9714 -2.5108 -2.3463 17 7 5.7251 -2.4453 -1.2718 18 14 5.5941 -3.3916 -3.8715 19 1 4.5628 -3.3240 -4.9378 20 1 6.8401 -2.7380 -4.3464 21 1 5.8747 -4.8123 -3.5428 22 1 -0.3633 0.5895 0.8418 23 1 -0.3632 0.4344 -0.9314 24 1 -0.3634 -1.0237 0.0896 25 1 3.1264 1.4438 0.0891 26 1 1.7514 1.9299 -0.9313 27 1 1.6058 1.9814 0.8420 28 1 2.6297 -1.4385 1.1089 29 1 0.5332 1.4325 1.7226 30 1 -0.1997 2.1625 3.9558 31 1 0.4587 0.8796 5.9501 32 1 1.8476 -1.1388 5.7178 33 1 2.5831 -1.8795 3.4892 34 1 3.8106 -1.2307 -0.4354 35 1 6.6046 -2.8545 -1.2704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906478999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:25 Heat of formation + Delta-G solvation = -17.227190 kcal Electronic energy + Delta-G solvation = -18052.398491 eV Core-core repulsion = 15242.827022 eV Total energy + Delta-G solvation = -2809.571469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35357 -39.81788 -37.13868 -36.17026 -33.35131 -33.07292 -31.44552 -29.46350 -28.27781 -27.29094 -24.16776 -23.34826 -22.46115 -20.50792 -20.01367 -18.51062 -17.98339 -16.98667 -16.74052 -16.02144 -15.91070 -15.51280 -15.19441 -14.76350 -14.60748 -14.44524 -14.14673 -13.74721 -13.57650 -13.13009 -13.02919 -12.92135 -12.75074 -12.47135 -12.38979 -12.14303 -12.03823 -11.61678 -11.42201 -11.01664 -10.38338 -10.13154 -9.69343 -8.55238 -8.30266 -6.05677 0.63972 0.82658 1.30956 1.39365 1.53519 1.81624 2.23361 2.46002 2.95318 3.09415 3.14583 3.78523 4.07997 4.12801 4.18205 4.26145 4.44534 4.56436 4.65326 4.70342 4.73865 4.79076 4.91112 4.98716 5.18452 5.26762 5.27004 5.34109 5.51439 5.70440 5.84482 5.87801 6.07248 6.39606 6.49777 6.72803 7.00848 7.40503 7.93185 8.61593 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032022 B = 0.005797 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.188387 B = 4829.235220 C = 5433.030097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.180 3.820 3 C -0.160 4.160 4 N -0.742 5.742 5 C 0.208 3.792 6 C -0.223 4.223 7 C -0.077 4.077 8 C -0.188 4.188 9 C -0.078 4.078 10 C -0.216 4.216 11 C 0.437 3.563 12 O -0.624 6.624 13 N -0.559 5.559 14 C -0.341 4.341 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.915 5.915 18 Si 0.996 3.004 19 H -0.272 1.272 20 H -0.269 1.269 21 H -0.269 1.269 22 H 0.102 0.898 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.394 0.606 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.395 0.605 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 6.193 11.977 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.090 3.910 3 C -0.218 4.218 4 N -0.373 5.373 5 C 0.106 3.894 6 C -0.245 4.245 7 C -0.095 4.095 8 C -0.208 4.208 9 C -0.096 4.096 10 C -0.239 4.239 11 C 0.224 3.776 12 O -0.511 6.511 13 N -0.195 5.195 14 C -0.470 4.470 15 H 0.100 0.900 16 C -0.209 4.209 17 N -0.555 5.555 18 Si 0.819 3.181 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.120 0.880 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.229 0.771 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.230 0.770 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.522 6.175 11.186 14.345 hybrid contribution 1.153 -1.028 -0.644 1.674 sum -5.369 5.147 10.541 12.901 Atomic orbital electron populations 1.22224 0.92109 1.02592 1.03728 1.20241 0.95796 0.93179 0.81787 1.22406 1.01657 0.93772 1.04013 1.44997 1.52636 1.37405 1.02301 1.18067 0.93432 0.93448 0.84485 1.21418 1.05092 0.98375 0.99594 1.21249 0.97548 0.99288 0.91452 1.21210 1.02742 0.97389 0.99454 1.21130 0.95857 0.96356 0.96265 1.20805 1.07942 1.02691 0.92430 1.20606 0.82720 0.83936 0.90333 1.90503 1.58387 1.65121 1.37110 1.41998 1.14798 1.47615 1.15039 1.19779 1.00924 1.32411 0.93905 0.89985 1.26097 0.95488 0.97754 1.01514 1.69671 1.11551 1.44781 1.29475 0.84831 0.78091 0.77948 0.77228 1.19672 1.19456 1.19462 0.88012 0.91411 0.93746 0.92838 0.91419 0.87851 0.77058 0.83764 0.83749 0.84289 0.84425 0.86696 0.76978 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 7.83 71.98 0.56 -4.34 16 2 C 0.18 6.59 0.98 2.86 0.00 6.59 16 3 C -0.16 -5.07 8.33 71.98 0.60 -4.47 16 4 N -0.74 -25.41 5.06 -302.80 -1.53 -26.94 16 5 C 0.21 6.22 6.24 38.21 0.24 6.46 16 6 C -0.22 -5.69 7.06 22.40 0.16 -5.53 16 7 C -0.08 -1.62 10.04 22.25 0.22 -1.39 16 8 C -0.19 -3.84 10.04 22.29 0.22 -3.61 16 9 C -0.08 -1.76 10.04 22.25 0.22 -1.54 16 10 C -0.22 -5.99 9.90 22.40 0.22 -5.77 16 11 C 0.44 21.22 6.62 87.66 0.58 21.80 16 12 O -0.62 -34.84 15.56 -3.08 -0.05 -34.89 16 13 N -0.56 -28.82 4.99 -306.99 -1.53 -30.35 16 14 C -0.34 -19.28 9.68 84.04 0.81 -18.47 16 15 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 16 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 17 N -0.91 -48.78 13.05 21.66 0.28 -48.50 16 18 Si 1.00 42.40 29.55 68.60 2.03 44.43 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H 0.10 2.69 4.65 -2.38 -0.01 2.68 16 23 H 0.07 2.32 7.68 -2.39 -0.02 2.30 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.10 2.63 4.86 -2.39 -0.01 2.62 16 28 H 0.39 14.59 7.13 -92.71 -0.66 13.93 16 29 H 0.15 3.44 3.13 -2.91 -0.01 3.43 16 30 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.11 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.40 19.59 6.56 -92.71 -0.61 18.98 16 35 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -64.22 287.92 3.37 -60.85 By element: Atomic # 1 Polarization: 45.77 SS G_CDS: -0.14 Total: 45.63 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.32 Total: -10.22 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -2.78 Total: -105.79 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.05 Total: -34.89 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -64.22 3.37 -60.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906478999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.621 kcal (2) G-P(sol) polarization free energy of solvation -64.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds