Wall clock time and date at job start Mon Mar 30 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.64774 * 2 1 4 4 C 1.54936 * 110.72221 * 123.15643 * 2 1 3 5 5 N 1.48537 * 103.22853 * 155.95001 * 4 2 1 6 6 C 1.38816 * 111.00363 * 200.27900 * 5 4 2 7 7 C 1.39795 * 119.58938 * 180.02562 * 6 5 4 8 8 C 1.38592 * 119.49615 * 179.97438 * 7 6 5 9 9 C 1.38397 * 118.67826 * 359.97438 * 8 7 6 10 10 C 1.40559 * 119.14805 * 0.02562 * 9 8 7 11 11 C 1.41308 * 119.78129 * 180.28124 * 10 9 8 12 12 H 1.08008 * 120.00513 * 359.71838 * 11 10 9 13 13 C 1.40029 * 120.00282 * 179.72612 * 11 10 9 14 14 N 1.30752 * 119.99464 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00451 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47074 * 59.99732 * 15 13 11 17 17 H 1.48497 * 109.47262 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47267 * 300.00204 * 15 13 11 19 19 N 1.31956 * 119.58168 * 359.97438 * 6 5 4 20 20 C 1.47905 * 105.81718 * 320.79083 * 5 4 2 21 21 C 1.53996 * 107.05900 * 25.32980 * 20 5 4 22 22 H 1.08999 * 110.39590 * 239.81548 * 21 20 5 23 23 O 1.42897 * 110.31006 * 117.69254 * 21 20 5 24 24 H 1.09000 * 109.46713 * 298.30179 * 1 2 3 25 25 H 1.08998 * 109.47302 * 58.29599 * 1 2 3 26 26 H 1.08998 * 109.47463 * 178.29814 * 1 2 3 27 27 H 1.09003 * 110.67049 * 37.51332 * 4 2 1 28 28 H 1.09004 * 110.81087 * 274.44537 * 4 2 1 29 29 H 1.08001 * 120.25000 * 359.95393 * 7 6 5 30 30 H 1.07991 * 120.66389 * 179.97438 * 8 7 6 31 31 H 1.08001 * 120.42131 * 180.02562 * 9 8 7 32 32 H 0.97000 * 119.99838 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.92206 * 144.68266 * 20 5 4 34 34 H 1.09000 * 109.91581 * 265.97969 * 20 5 4 35 35 H 0.96702 * 114.00389 * 64.27970 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0782 -0.7926 1.2132 5 7 3.4335 -1.2042 0.7659 6 6 3.8974 -2.2805 1.5098 7 6 5.1605 -2.8144 1.2378 8 6 5.6219 -3.8886 1.9821 9 6 4.8116 -4.4027 2.9793 10 6 3.5515 -3.8222 3.2047 11 6 2.7157 -4.3326 4.2234 12 1 3.0438 -5.1690 4.8228 13 6 1.4618 -3.7542 4.4557 14 7 1.0646 -2.7414 3.7304 15 14 0.3566 -4.4293 5.8018 16 1 1.0493 -4.3222 7.1111 17 1 -0.9054 -3.6478 5.8446 18 1 0.0477 -5.8542 5.5205 19 7 3.1410 -2.7862 2.4655 20 6 3.2942 -1.5671 -0.6612 21 6 2.0809 -0.7922 -1.2079 22 1 1.3262 -1.4835 -1.5829 23 8 2.4900 0.1035 -2.2435 24 1 -0.3633 0.4872 0.9048 25 1 -0.3634 0.5401 -0.8743 26 1 -0.3634 -1.0272 -0.0305 27 1 1.4578 -1.6659 1.4144 28 1 2.1414 -0.1555 2.0954 29 1 5.7718 -2.3931 0.4535 30 1 6.5944 -4.3161 1.7878 31 1 5.1433 -5.2391 3.5766 32 1 0.1962 -2.3404 3.8915 33 1 4.1936 -1.2814 -1.2066 34 1 3.1236 -2.6394 -0.7567 35 1 2.8448 -0.3375 -3.0276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116662338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:56 Heat of formation + Delta-G solvation = -25.689386 kcal Electronic energy + Delta-G solvation = -18379.538948 eV Core-core repulsion = 15569.600531 eV Total energy + Delta-G solvation = -2809.938417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14381 -39.35077 -36.81477 -35.46695 -33.94224 -32.38429 -31.09149 -28.99725 -27.89018 -26.34007 -23.66680 -23.26994 -21.70974 -21.04687 -19.24178 -18.25766 -17.82635 -16.68970 -16.57126 -16.36304 -16.09254 -15.18472 -14.76488 -14.69473 -14.42580 -14.10894 -13.87523 -13.46545 -13.18115 -12.90685 -12.80860 -12.68317 -12.64979 -12.56128 -12.22234 -11.81428 -11.70282 -11.42057 -11.24036 -11.03789 -10.45697 -9.94189 -9.51972 -8.87205 -8.29781 -6.51154 0.85392 1.15588 1.40986 1.51901 1.54342 2.22714 2.77502 3.04471 3.24940 3.60177 3.62557 3.91415 4.12884 4.23448 4.32366 4.49120 4.54216 4.59099 4.74914 4.75923 4.87315 4.90653 4.91183 5.02374 5.09114 5.25022 5.25628 5.27496 5.50169 5.59861 5.82718 5.88690 5.99646 6.24851 6.47484 6.77173 6.88766 7.03535 8.13874 8.44058 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.008389 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.161700 B = 3336.759567 C = 4512.940022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.082 0.918 4 C 0.068 3.932 5 N -0.473 5.473 6 C 0.294 3.706 7 C -0.321 4.321 8 C -0.043 4.043 9 C -0.316 4.316 10 C 0.237 3.763 11 C -0.465 4.465 12 H 0.087 0.913 13 C 0.028 3.972 14 N -0.742 5.742 15 Si 0.984 3.016 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.261 1.261 19 N -0.529 5.529 20 C 0.023 3.977 21 C 0.111 3.889 22 H 0.078 0.922 23 O -0.566 6.566 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.278 0.722 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 2.360 -7.710 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 H 0.100 0.900 4 C -0.059 4.059 5 N -0.192 5.192 6 C 0.055 3.945 7 C -0.346 4.346 8 C -0.067 4.067 9 C -0.339 4.339 10 C 0.111 3.889 11 C -0.496 4.496 12 H 0.105 0.895 13 C -0.195 4.195 14 N -0.364 5.364 15 Si 0.805 3.195 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.185 1.185 19 N -0.247 5.247 20 C -0.104 4.104 21 C 0.052 3.948 22 H 0.096 0.904 23 O -0.374 6.374 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.152 0.848 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.287 3.738 -7.110 8.679 hybrid contribution 0.486 -1.712 0.233 1.794 sum -2.801 2.027 -6.877 7.697 Atomic orbital electron populations 1.21660 0.92428 1.02034 1.02684 1.22141 0.97006 0.99575 0.92168 0.89961 1.22949 0.87865 0.98969 0.96115 1.61965 1.25206 1.28983 1.03068 1.20458 0.91636 0.89094 0.93263 1.21021 0.98585 1.05453 1.09517 1.21111 0.98265 0.94140 0.93218 1.21850 0.98517 1.07272 1.06239 1.18851 0.90661 0.88247 0.91161 1.19898 1.00727 1.14821 1.14173 0.89518 1.26894 0.99342 0.94344 0.98889 1.70176 1.17962 1.15687 1.32551 0.85235 0.77076 0.79197 0.78018 1.18734 1.19172 1.18499 1.68615 1.33019 1.13773 1.09306 1.23607 1.00707 0.98298 0.87780 1.22611 0.93356 0.90622 0.88242 0.90391 1.86504 1.84913 1.36744 1.29243 0.91979 0.90673 0.92953 0.91294 0.92844 0.86688 0.84850 0.87385 0.91094 0.88517 0.94295 0.75448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.17 71.98 0.66 -2.87 16 2 C -0.09 -2.90 3.39 -9.59 -0.03 -2.93 16 3 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 4 C 0.07 2.87 5.40 86.65 0.47 3.33 16 5 N -0.47 -20.49 5.29 -689.23 -3.65 -24.14 16 6 C 0.29 14.69 6.07 133.42 0.81 15.50 16 7 C -0.32 -14.84 9.47 22.73 0.22 -14.63 16 8 C -0.04 -1.94 10.15 22.39 0.23 -1.71 16 9 C -0.32 -15.91 9.83 22.87 0.22 -15.68 16 10 C 0.24 13.30 6.55 40.18 0.26 13.56 16 11 C -0.46 -25.19 9.14 23.46 0.21 -24.98 16 12 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 13 C 0.03 1.40 5.50 85.29 0.47 1.87 16 14 N -0.74 -38.42 10.77 21.84 0.24 -38.18 16 15 Si 0.98 37.66 29.56 68.60 2.03 39.69 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 19 N -0.53 -29.32 5.93 -186.60 -1.11 -30.43 16 20 C 0.02 0.80 6.00 86.45 0.52 1.32 16 21 C 0.11 3.23 3.94 31.47 0.12 3.35 16 22 H 0.08 2.04 7.83 -2.39 -0.02 2.03 16 23 O -0.57 -14.14 13.25 -148.98 -1.97 -16.11 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16 27 H 0.07 3.28 6.41 -2.39 -0.02 3.27 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.12 4.73 8.05 -2.91 -0.02 4.70 16 30 H 0.13 4.90 8.06 -2.92 -0.02 4.87 16 31 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 32 H 0.28 13.06 8.29 -92.71 -0.77 12.29 16 33 H 0.10 2.98 7.96 -2.39 -0.02 2.96 16 34 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 35 H 0.40 5.96 9.12 -74.06 -0.68 5.28 16 Total: -1.00 -64.20 290.73 0.11 -64.09 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.41 Total: 28.95 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.16 Total: -23.87 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -4.52 Total: -92.75 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.97 Total: -16.11 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -64.20 0.11 -64.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.402 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds