Wall clock time and date at job start Mon Mar 30 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.39892 * 120.00430 * 2 1 4 4 C 1.38887 * 120.00406 * 179.97438 * 3 2 1 5 5 C 1.38066 * 119.99029 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.00782 * 0.02708 * 5 4 3 7 7 N 1.40154 * 119.99672 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99776 * 35.08728 * 7 6 5 9 9 O 1.21294 * 120.00244 * 355.38855 * 8 7 6 10 10 C 1.50709 * 119.99771 * 175.38878 * 8 7 6 11 11 H 1.09001 * 109.46880 * 299.99913 * 10 8 7 12 12 C 1.53001 * 109.47109 * 60.00002 * 10 8 7 13 13 C 1.50698 * 109.46833 * 179.97438 * 10 8 7 14 14 H 1.08000 * 120.00266 * 0.02562 * 13 10 8 15 15 C 1.37882 * 119.99729 * 180.27350 * 13 10 8 16 16 N 1.31510 * 119.99939 * 179.72161 * 15 13 10 17 17 Si 1.86807 * 119.99786 * 359.72767 * 15 13 10 18 18 H 1.48498 * 109.46875 * 90.00042 * 17 15 13 19 19 H 1.48496 * 109.46768 * 209.99543 * 17 15 13 20 20 H 1.48492 * 109.47261 * 329.99756 * 17 15 13 21 21 C 1.38848 * 120.00822 * 0.24620 * 6 5 4 22 22 C 1.38069 * 120.00574 * 359.45278 * 21 6 5 23 23 H 1.09002 * 109.47492 * 300.00753 * 1 2 3 24 24 H 1.09006 * 109.46870 * 60.00281 * 1 2 3 25 25 H 1.08994 * 109.47704 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00066 * 179.97438 * 2 1 3 27 27 H 1.07998 * 120.00682 * 359.96114 * 4 3 2 28 28 H 1.08001 * 119.99646 * 180.02562 * 5 4 3 29 29 H 0.97003 * 120.00167 * 215.08880 * 7 6 5 30 30 H 1.09006 * 109.46927 * 59.99582 * 12 10 8 31 31 H 1.08991 * 109.47304 * 179.97438 * 12 10 8 32 32 H 1.09002 * 109.47092 * 299.99965 * 12 10 8 33 33 H 0.96998 * 119.99857 * 179.97438 * 16 15 13 34 34 H 1.08009 * 119.99801 * 179.71023 * 21 6 5 35 35 H 1.07996 * 120.00436 * 180.24726 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1645 1.2114 0.0000 4 6 3.5534 1.2114 0.0005 5 6 4.2435 2.4072 0.0000 6 6 3.5492 3.6097 -0.0005 7 7 4.2500 4.8234 -0.0005 8 6 5.4143 4.9292 -0.6710 9 8 5.8980 3.9531 -1.2044 10 6 6.1154 6.2605 -0.7581 11 1 5.4628 6.9834 -1.2478 12 6 6.4542 6.7516 0.6507 13 6 7.3851 6.1083 -1.5555 14 1 7.6570 5.1442 -1.9591 15 6 8.2022 7.1989 -1.7653 16 7 9.3130 7.0649 -2.4564 17 14 7.7315 8.8666 -1.0676 18 1 8.3040 9.0126 0.2948 19 1 8.2644 9.9388 -1.9459 20 1 6.2522 8.9741 -0.9971 21 6 2.1608 3.6098 0.0047 22 6 1.4701 2.4143 -0.0011 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9500 -0.8400 0.0004 27 1 4.0935 0.2762 0.0016 28 1 5.3235 2.4073 0.0000 29 1 3.8971 5.5873 0.4821 30 1 7.1067 6.0286 1.1404 31 1 6.9616 7.7141 0.5878 32 1 5.5361 6.8615 1.2278 33 1 9.8877 7.8322 -2.6043 34 1 1.6209 4.5453 0.0090 35 1 0.3902 2.4145 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122167997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:12 Heat of formation + Delta-G solvation = -0.056953 kcal Electronic energy + Delta-G solvation = -17470.946369 eV Core-core repulsion = 14662.119458 eV Total energy + Delta-G solvation = -2808.826911 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97879 -38.46219 -35.68358 -33.88669 -33.32573 -31.22359 -30.74884 -28.51020 -25.76572 -25.14929 -23.18323 -22.52737 -21.11758 -19.29021 -17.48652 -17.21518 -16.77221 -15.86543 -15.51710 -14.71406 -14.43849 -14.28549 -14.07584 -13.61904 -13.29903 -13.13565 -12.80613 -12.46921 -12.37390 -12.29618 -12.03858 -11.61869 -11.05362 -10.92863 -10.63464 -10.43549 -10.22331 -9.64676 -9.11364 -8.94042 -8.82802 -8.59571 -8.54449 -6.95675 -6.05290 -4.05902 1.62430 1.78096 3.23322 3.30850 3.36719 3.44793 3.49415 3.77471 4.16244 4.37616 4.94076 5.05883 5.16340 5.23987 5.27927 5.49165 5.55770 5.63738 5.76578 5.87949 6.09274 6.22844 6.25899 6.31756 6.41162 6.43570 6.66525 6.80066 6.87465 7.14346 7.21259 7.47159 7.54172 7.71048 8.06990 8.53870 9.01887 9.14428 9.53218 11.07615 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.055361 B = 0.004552 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.646138 B = 6149.315681 C = 6449.010541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.760 5.760 3 C 0.185 3.815 4 C -0.174 4.174 5 C -0.075 4.075 6 C 0.106 3.894 7 N -0.688 5.688 8 C 0.526 3.474 9 O -0.514 6.514 10 C -0.003 4.003 11 H 0.055 0.945 12 C -0.146 4.146 13 C -0.507 4.507 14 H 0.094 0.906 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.884 3.116 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.267 1.267 21 C -0.108 4.108 22 C -0.179 4.179 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.398 0.602 27 H 0.119 0.881 28 H 0.141 0.859 29 H 0.403 0.597 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.121 0.879 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.687 -8.588 8.101 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.392 5.392 3 C 0.084 3.916 4 C -0.197 4.197 5 C -0.096 4.096 6 C 0.010 3.990 7 N -0.334 5.334 8 C 0.316 3.684 9 O -0.387 6.387 10 C -0.025 4.025 11 H 0.072 0.928 12 C -0.204 4.204 13 C -0.545 4.545 14 H 0.112 0.888 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.192 1.192 21 C -0.129 4.129 22 C -0.202 4.202 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.137 0.863 28 H 0.159 0.841 29 H 0.238 0.762 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.313 -9.106 7.591 20.983 hybrid contribution -0.209 1.074 0.558 1.228 sum -17.522 -8.032 8.149 20.927 Atomic orbital electron populations 1.21438 0.80766 1.01807 1.00793 1.44353 1.05224 1.05262 1.84374 1.17782 0.91075 0.86125 0.96666 1.20498 0.91692 0.98302 1.09203 1.21164 1.01282 0.90247 0.96918 1.17704 0.90600 0.86480 1.04227 1.43903 1.24196 1.12000 1.53313 1.21467 0.78781 0.92578 0.75589 1.90568 1.64037 1.39468 1.44620 1.19327 0.97956 0.89919 0.95281 0.92772 1.22141 0.99687 1.01264 0.97299 1.20930 1.02608 0.98728 1.32243 0.88798 1.24979 0.94742 0.98455 0.94924 1.69878 1.12485 1.30868 1.40074 0.86911 0.79065 0.84285 0.78268 1.20487 1.22295 1.19229 1.20652 0.92257 0.97862 1.02127 1.20312 0.98988 0.90658 1.10230 0.93342 0.93309 0.91328 0.76896 0.86287 0.84095 0.76182 0.92222 0.93126 0.94770 0.92533 0.86092 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 9.94 59.84 0.60 1.30 16 2 N -0.76 -7.50 5.90 -65.35 -0.39 -7.88 16 3 C 0.18 2.40 6.66 -83.70 -0.56 1.84 16 4 C -0.17 -2.52 9.89 -39.40 -0.39 -2.91 16 5 C -0.08 -1.30 8.69 -39.42 -0.34 -1.65 16 6 C 0.11 1.76 6.30 -83.60 -0.53 1.23 16 7 N -0.69 -11.84 5.27 -9.81 -0.05 -11.90 16 8 C 0.53 11.60 6.99 -10.98 -0.08 11.52 16 9 O -0.51 -13.14 12.90 5.55 0.07 -13.07 16 10 C 0.00 -0.07 2.24 -92.92 -0.21 -0.28 16 11 H 0.05 1.22 7.21 -51.93 -0.37 0.85 16 12 C -0.15 -2.97 8.57 37.16 0.32 -2.65 16 13 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 14 H 0.09 3.08 7.00 -52.49 -0.37 2.71 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 16 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 17 Si 0.88 21.22 24.37 -169.99 -4.14 17.08 16 18 H -0.28 -6.44 6.86 56.52 0.39 -6.05 16 19 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 21 C -0.11 -1.48 9.96 -39.42 -0.39 -1.88 16 22 C -0.18 -2.27 9.31 -39.40 -0.37 -2.64 16 23 H 0.05 0.34 7.95 -51.93 -0.41 -0.07 16 24 H 0.05 0.36 7.95 -51.93 -0.41 -0.05 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.40 3.26 8.84 -40.82 -0.36 2.90 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.14 2.76 6.22 -52.49 -0.33 2.43 16 29 H 0.40 5.60 8.11 -40.82 -0.33 5.27 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.07 3.25 -51.93 -0.17 0.90 16 32 H 0.03 0.54 7.47 -51.93 -0.39 0.15 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.12 1.23 6.73 -52.49 -0.35 0.88 16 LS Contribution 287.27 15.07 4.33 4.33 Total: -1.00 -33.69 287.27 -6.13 -39.82 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.37 Total: 7.62 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.35 Total: -9.10 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.34 Total: -46.66 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.69 -6.13 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122167997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.759 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds