Wall clock time and date at job start Mon Mar 30 2020 18:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.50696 * 109.47432 * 120.00661 * 2 1 3 5 5 C 1.38125 * 119.57423 * 274.72292 * 4 2 1 6 6 C 1.38790 * 119.30668 * 179.79188 * 5 4 2 7 7 C 1.38398 * 118.49685 * 0.47591 * 6 5 4 8 8 C 1.38996 * 119.10309 * 359.74503 * 7 6 5 9 9 N 1.39414 * 119.69472 * 180.02562 * 8 7 6 10 10 C 1.34773 * 119.99624 * 174.91814 * 9 8 7 11 11 O 1.21277 * 120.00215 * 5.09101 * 10 9 8 12 12 C 1.50707 * 119.99788 * 185.08746 * 10 9 8 13 13 C 1.50702 * 109.46965 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00200 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99754 * 180.02562 * 13 12 10 16 16 N 1.31517 * 120.00168 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99653 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47293 * 59.99724 * 17 15 13 19 19 H 1.48505 * 109.46700 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47016 * 299.99395 * 17 15 13 21 21 N 1.31902 * 119.58034 * 94.99650 * 4 2 1 22 22 H 1.09003 * 109.47224 * 299.99324 * 1 2 3 23 23 H 1.09001 * 109.47455 * 59.99278 * 1 2 3 24 24 H 1.09001 * 109.47380 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47224 * 240.00676 * 2 1 3 26 26 H 1.08998 * 109.47135 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.47460 * 300.00709 * 3 2 1 28 28 H 1.08998 * 109.46812 * 60.00513 * 3 2 1 29 29 H 1.08000 * 120.34627 * 359.97438 * 5 4 2 30 30 H 1.08004 * 120.75484 * 180.20365 * 6 5 4 31 31 H 1.08006 * 120.45253 * 179.77457 * 7 6 5 32 32 H 0.96994 * 119.99811 * 354.91920 * 9 8 7 33 33 H 1.08994 * 109.47008 * 300.00453 * 12 10 9 34 34 H 1.08996 * 109.46794 * 60.00454 * 12 10 9 35 35 H 0.96991 * 119.99816 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.1664 -0.0117 2.4142 6 6 2.6254 -0.6726 3.5450 7 6 2.9438 -2.0155 3.4413 8 6 2.7889 -2.6544 2.2167 9 7 3.1054 -4.0070 2.0984 10 6 2.8616 -4.6576 0.9436 11 8 2.4534 -4.0474 -0.0217 12 6 3.0962 -6.1435 0.8519 13 6 2.7493 -6.6221 -0.5344 14 1 2.3940 -5.9207 -1.2747 15 6 2.8845 -7.9558 -0.8571 16 7 3.3166 -8.8101 0.0446 17 14 2.4551 -8.5489 -2.5756 18 1 3.3108 -7.8510 -3.5684 19 1 2.6862 -10.0131 -2.6660 20 1 1.0274 -8.2543 -2.8586 21 7 2.3436 -1.9904 1.1616 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8898 28 1 1.6767 1.9562 0.8900 29 1 1.9137 1.0374 2.4601 30 1 2.7360 -0.1498 4.4836 31 1 3.3073 -2.5598 4.3004 32 1 3.5011 -4.4797 2.8473 33 1 4.1442 -6.3593 1.0596 34 1 2.4683 -6.6561 1.5806 35 1 3.4121 -9.7481 -0.1826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:17 Heat of formation + Delta-G solvation = -6.211984 kcal Electronic energy + Delta-G solvation = -17513.841135 eV Core-core repulsion = 14704.747322 eV Total energy + Delta-G solvation = -2809.093813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46693 -38.46713 -35.71612 -33.72896 -32.95278 -32.05206 -29.64191 -28.37429 -27.14136 -24.21059 -23.96112 -22.54693 -20.37301 -19.71659 -17.22911 -16.53501 -16.07647 -15.97504 -15.22558 -14.84634 -14.42277 -14.38377 -14.06812 -13.54876 -13.19044 -12.79710 -12.72642 -12.40393 -12.10015 -11.92150 -11.36646 -11.27720 -11.13159 -10.82395 -10.81099 -10.66871 -10.14322 -9.97460 -9.49052 -9.38312 -9.31644 -8.44416 -8.31208 -7.86033 -6.07524 -4.07319 1.32840 1.55577 3.37805 3.39446 3.41427 3.50475 3.59665 4.20276 4.40300 4.50043 4.77631 5.06938 5.15588 5.22843 5.30327 5.31026 5.31670 5.43881 5.60891 5.78297 5.79861 5.91647 5.95301 6.04110 6.19644 6.30863 6.33500 6.43080 6.61985 7.05936 7.20889 7.27137 7.73784 7.95120 8.21818 8.55347 9.03107 9.16689 9.57953 11.04859 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.005205 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.056303 B = 5377.790912 C = 6173.069280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C -0.143 4.143 4 C 0.170 3.830 5 C -0.221 4.221 6 C -0.048 4.048 7 C -0.228 4.228 8 C 0.377 3.623 9 N -0.674 5.674 10 C 0.499 3.501 11 O -0.473 6.473 12 C 0.008 3.992 13 C -0.510 4.510 14 H 0.075 0.925 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.275 1.275 21 N -0.474 5.474 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.413 0.587 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 17.293 7.573 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.201 4.201 4 C 0.030 3.970 5 C -0.243 4.243 6 C -0.074 4.074 7 C -0.252 4.252 8 C 0.145 3.855 9 N -0.320 5.320 10 C 0.288 3.712 11 O -0.340 6.340 12 C -0.031 4.031 13 C -0.548 4.548 14 H 0.094 0.906 15 C -0.145 4.145 16 N -0.541 5.541 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 N -0.189 5.189 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.249 0.751 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.923 16.931 6.018 18.071 hybrid contribution 0.196 -0.334 0.565 0.685 sum -1.727 16.597 6.583 17.938 Atomic orbital electron populations 1.21759 0.93730 1.02565 1.01533 1.20047 0.96155 0.94952 0.95652 1.21897 1.01250 0.95047 1.01908 1.21102 0.92444 0.88972 0.94460 1.21753 1.07279 1.01428 0.93839 1.21235 0.94403 0.93416 0.98312 1.21451 1.09899 0.96408 0.97462 1.18738 0.91449 0.86049 0.89245 1.44433 1.62608 1.06675 1.18329 1.22409 0.76042 0.92008 0.80708 1.90645 1.39851 1.68606 1.34934 1.19276 0.99407 0.83977 1.00443 1.21108 1.44010 0.93536 0.96152 0.90640 1.24995 0.95134 0.96602 0.97761 1.69945 1.46782 1.03321 1.34017 0.86459 0.79179 0.77129 0.84125 1.20079 1.21333 1.20083 1.67582 1.13740 1.08143 1.29439 0.92817 0.92104 0.92044 0.88924 0.92493 0.92056 0.92330 0.85215 0.85099 0.85049 0.75113 0.93262 0.93212 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.18 37.15 0.34 -1.32 16 2 C -0.05 -0.65 3.23 -91.78 -0.30 -0.95 16 3 C -0.14 -1.42 8.61 37.16 0.32 -1.10 16 4 C 0.17 2.67 5.79 -82.61 -0.48 2.19 16 5 C -0.22 -2.78 9.17 -39.42 -0.36 -3.14 16 6 C -0.05 -0.56 10.17 -39.32 -0.40 -0.96 16 7 C -0.23 -3.08 9.94 -39.24 -0.39 -3.47 16 8 C 0.38 6.73 7.42 -154.69 -1.15 5.58 16 9 N -0.67 -12.37 5.39 -11.43 -0.06 -12.43 16 10 C 0.50 11.71 7.78 -10.98 -0.09 11.62 16 11 O -0.47 -12.71 13.72 5.56 0.08 -12.63 16 12 C 0.01 0.21 5.46 -29.03 -0.16 0.05 16 13 C -0.51 -14.84 8.92 -34.44 -0.31 -15.14 16 14 H 0.08 2.30 6.75 -52.49 -0.35 1.94 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 17 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 N -0.47 -9.32 7.80 -8.60 -0.07 -9.39 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.49 6.48 -51.93 -0.34 0.15 16 29 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 30 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.41 5.92 8.70 -40.82 -0.36 5.57 16 33 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -34.12 299.98 -7.62 -41.74 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.74 Total: 1.70 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.06 Total: -5.13 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.61 Total: -47.45 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.12 -7.62 -41.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.530 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds