Wall clock time and date at job start Mon Mar 30 2020 18:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47343 * 2 1 4 4 N 1.46507 * 112.99883 * 299.84745 * 3 2 1 5 5 C 1.39080 * 120.00384 * 295.84286 * 4 3 2 6 6 C 1.38748 * 119.65514 * 353.25714 * 5 4 3 7 7 C 1.40780 * 118.66744 * 180.02562 * 6 5 4 8 8 C 1.41551 * 120.99430 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99665 * 328.48077 * 8 7 6 10 10 C 1.40020 * 119.99952 * 148.47728 * 8 7 6 11 11 N 1.30749 * 120.00312 * 348.29157 * 10 8 7 12 12 Si 1.86799 * 119.99941 * 168.29455 * 10 8 7 13 13 H 1.48502 * 109.47519 * 59.99758 * 12 10 8 14 14 H 1.48495 * 109.47596 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47001 * 300.00298 * 12 10 8 16 16 C 1.41192 * 118.01180 * 359.97438 * 7 6 5 17 17 C 1.36554 * 119.14970 * 359.97438 * 16 7 6 18 18 N 1.32098 * 121.26498 * 0.02562 * 17 16 7 19 19 C 1.54029 * 113.81993 * 71.67551 * 3 2 1 20 20 O 1.44568 * 85.38225 * 136.86285 * 19 3 2 21 21 C 1.44166 * 93.33097 * 335.80494 * 20 19 3 22 22 H 1.08999 * 109.47673 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47355 * 300.01000 * 1 2 3 24 24 H 1.09006 * 109.46533 * 60.00264 * 1 2 3 25 25 H 1.09003 * 109.46904 * 239.99204 * 2 1 3 26 26 H 1.08997 * 109.46633 * 120.00369 * 2 1 3 27 27 H 0.96999 * 119.99257 * 115.83741 * 4 3 2 28 28 H 1.07994 * 120.66457 * 359.72723 * 6 5 4 29 29 H 0.96999 * 119.99495 * 180.02562 * 11 10 8 30 30 H 1.08005 * 120.42215 * 179.97438 * 16 7 6 31 31 H 1.08000 * 119.36875 * 180.02562 * 17 16 7 32 32 H 1.09000 * 113.86858 * 251.07734 * 19 3 2 33 33 H 1.09002 * 113.86215 * 22.78061 * 19 3 2 34 34 H 1.09002 * 113.87150 * 270.04365 * 21 20 19 35 35 H 1.08997 * 113.86774 * 138.33433 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5981 2.2058 -1.1697 5 6 2.0173 1.8332 -2.4424 6 6 2.9627 0.8280 -2.5869 7 6 3.3726 0.4678 -3.8846 8 6 4.3343 -0.5505 -4.0890 9 1 5.1131 -0.7122 -3.3583 10 6 4.2760 -1.3481 -5.2383 11 7 3.2174 -1.3138 -6.0049 12 14 5.7106 -2.4614 -5.6764 13 1 5.9370 -3.4331 -4.5765 14 1 5.4030 -3.1952 -6.9302 15 1 6.9327 -1.6405 -5.8709 16 6 2.7956 1.1526 -4.9763 17 6 1.8709 2.1282 -4.7358 18 7 1.5089 2.4412 -3.5046 19 6 1.8298 2.1766 1.3376 20 8 3.1740 2.6717 1.1432 21 6 3.5471 1.5693 0.2924 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.0130 2.9712 -1.0565 28 1 3.3794 0.3352 -1.7210 29 1 3.1769 -1.8667 -6.8009 30 1 3.0820 0.9079 -5.9885 31 1 1.4270 2.6540 -5.5682 32 1 1.0629 2.9503 1.3003 33 1 1.7247 1.5108 2.1943 34 1 3.9650 0.7185 0.8305 35 1 4.1411 1.8618 -0.5735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157536881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:30 Heat of formation + Delta-G solvation = 17.116860 kcal Electronic energy + Delta-G solvation = -18295.257734 eV Core-core repulsion = 15487.175535 eV Total energy + Delta-G solvation = -2808.082199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64027 -38.23420 -34.92459 -33.89518 -31.99992 -30.60547 -28.45855 -27.28111 -26.40436 -25.71092 -22.77681 -21.57504 -21.14459 -19.16108 -17.50635 -16.36139 -15.92768 -15.86801 -15.26608 -14.90523 -14.48935 -14.11456 -13.77454 -13.23912 -13.07113 -12.61168 -12.58796 -12.42005 -12.14483 -11.68310 -11.41634 -11.20217 -10.98746 -10.80791 -10.62493 -10.33592 -10.16385 -9.89146 -9.69489 -9.36788 -8.86654 -7.95544 -7.90480 -6.80660 -6.50974 -4.57032 2.80814 3.00562 3.04324 3.06909 3.31056 3.67086 3.89489 3.99700 4.35957 4.72955 5.05686 5.25781 5.36786 5.51128 5.55251 5.68273 5.74333 5.87440 6.03980 6.06814 6.15025 6.19381 6.27215 6.48328 6.55001 6.74120 6.85797 6.92784 7.02730 7.22010 7.50649 7.81533 8.01789 8.03505 8.43166 8.65626 8.82805 8.86174 9.71435 10.17427 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.006788 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.698128 B = 4124.012869 C = 4496.438907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.141 3.859 4 N -0.717 5.717 5 C 0.399 3.601 6 C -0.329 4.329 7 C 0.160 3.840 8 C -0.464 4.464 9 H 0.078 0.922 10 C 0.079 3.921 11 N -0.794 5.794 12 Si 0.910 3.090 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.264 1.264 16 C -0.234 4.234 17 C 0.115 3.885 18 N -0.618 5.618 19 C 0.036 3.964 20 O -0.380 6.380 21 C 0.022 3.978 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.393 0.607 28 H 0.103 0.897 29 H 0.281 0.719 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.838 0.385 8.805 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.051 3.949 4 N -0.353 5.353 5 C 0.169 3.831 6 C -0.355 4.355 7 C 0.152 3.848 8 C -0.496 4.496 9 H 0.096 0.904 10 C -0.139 4.139 11 N -0.420 5.420 12 Si 0.734 3.266 13 H -0.190 1.190 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.259 4.259 17 C -0.035 4.035 18 N -0.341 5.341 19 C -0.042 4.042 20 O -0.298 6.298 21 C -0.056 4.056 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.228 0.772 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.343 1.050 8.847 9.212 hybrid contribution 0.878 -1.183 -0.512 1.560 sum -1.465 -0.134 8.335 8.464 Atomic orbital electron populations 1.21600 0.95456 1.01217 1.01635 1.22048 0.96862 0.95921 1.03357 1.22693 0.93732 0.92161 0.86328 1.43651 1.56260 1.34036 1.01333 1.17862 0.90316 0.90692 0.84253 1.21346 1.08245 1.08099 0.97821 1.17609 0.88512 0.88697 0.89994 1.19485 1.11611 1.13861 1.04640 0.90371 1.25890 0.96059 0.97054 0.94930 1.69766 1.26231 1.33663 1.12300 0.86341 0.81778 0.79956 0.78476 1.19002 1.20299 1.18807 1.21717 1.04015 0.99876 1.00267 1.21362 0.95041 0.95305 0.91785 1.66728 1.34104 1.34884 0.98352 1.24292 0.86512 0.97378 0.95977 1.89727 1.26997 1.42628 1.70495 1.24628 0.97599 0.89411 0.94007 0.93062 0.93546 0.92127 0.89352 0.91568 0.77196 0.87894 0.90773 0.86468 0.86363 0.89222 0.89312 0.89869 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.70 37.16 0.36 -1.58 16 2 C -0.14 -2.10 5.06 -26.73 -0.14 -2.24 16 3 C 0.14 2.17 0.53 -130.74 -0.07 2.10 16 4 N -0.72 -13.13 4.91 -53.95 -0.26 -13.40 16 5 C 0.40 9.06 7.39 -154.98 -1.14 7.91 16 6 C -0.33 -7.83 7.13 -38.43 -0.27 -8.10 16 7 C 0.16 4.20 5.52 -106.55 -0.59 3.61 16 8 C -0.46 -12.03 9.10 -37.65 -0.34 -12.37 16 9 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 10 C 0.08 1.95 5.25 -17.35 -0.09 1.86 16 11 N -0.79 -20.24 11.16 55.55 0.62 -19.62 16 12 Si 0.91 18.33 29.57 -169.99 -5.03 13.30 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 16 C -0.23 -6.06 8.69 -39.07 -0.34 -6.40 16 17 C 0.11 2.77 11.10 -18.05 -0.20 2.57 16 18 N -0.62 -14.87 10.37 -12.82 -0.13 -15.00 16 19 C 0.04 0.46 8.14 37.64 0.31 0.76 16 20 O -0.38 -6.14 12.47 -35.23 -0.44 -6.58 16 21 C 0.02 0.34 7.13 37.64 0.27 0.61 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.53 7.85 -51.93 -0.41 0.12 16 24 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 25 H 0.09 1.59 5.93 -51.93 -0.31 1.28 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.39 6.80 8.78 -40.82 -0.36 6.44 16 28 H 0.10 2.27 4.65 -52.49 -0.24 2.03 16 29 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 30 H 0.12 3.09 6.59 -52.48 -0.35 2.75 16 31 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.10 1.86 6.93 -51.93 -0.36 1.50 16 LS Contribution 287.85 15.07 4.34 4.34 Total: -1.00 -28.43 287.85 -7.66 -36.09 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.50 Total: 12.14 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.25 Total: -11.26 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.22 Total: -48.03 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.44 Total: -6.58 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.43 -7.66 -36.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157536881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.204 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds