Wall clock time and date at job start Mon Mar 30 2020 18:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47156 * 240.00466 * 2 1 3 5 5 C 1.53000 * 109.47344 * 175.00131 * 4 2 1 6 6 C 1.50704 * 109.47172 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99785 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00188 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99678 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46984 * 90.00686 * 10 8 6 12 12 H 1.48504 * 109.46767 * 209.99981 * 10 8 6 13 13 H 1.48491 * 109.47339 * 330.00546 * 10 8 6 14 14 N 1.46898 * 109.47661 * 120.00138 * 2 1 3 15 15 C 1.46897 * 111.00152 * 275.00516 * 14 2 1 16 16 C 1.50697 * 109.47329 * 179.97438 * 15 14 2 17 17 C 1.35055 * 125.61856 * 89.99798 * 16 15 14 18 18 C 1.40475 * 107.10934 * 179.97438 * 17 16 15 19 19 C 1.36547 * 106.70482 * 359.97438 * 18 17 16 20 20 C 1.43210 * 125.98209 * 180.02562 * 19 18 17 21 21 N 8.03574 * 92.05049 * 112.69939 * 2 1 3 22 22 O 1.34052 * 125.61730 * 269.97330 * 16 15 14 23 23 H 1.08996 * 109.47027 * 60.00001 * 1 2 3 24 24 H 1.09004 * 109.46685 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46746 * 299.99724 * 1 2 3 26 26 H 1.09004 * 109.47062 * 294.99758 * 4 2 1 27 27 H 1.08994 * 109.47486 * 54.99241 * 4 2 1 28 28 H 1.09004 * 109.46737 * 299.99826 * 5 4 2 29 29 H 1.08994 * 109.47594 * 59.99707 * 5 4 2 30 30 H 0.97002 * 120.00587 * 179.97438 * 9 8 6 31 31 H 1.00903 * 111.00414 * 151.04354 * 14 2 1 32 32 H 1.08996 * 109.47601 * 59.99239 * 15 14 2 33 33 H 1.09002 * 109.47085 * 299.99443 * 15 14 2 34 34 H 1.08001 * 126.44338 * 0.23846 * 17 16 15 35 35 H 1.08000 * 126.64089 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3241 -2.5440 7 1 3.3688 -1.8051 -3.2127 8 6 5.4185 -1.3603 -2.8157 9 7 6.2690 -0.7750 -2.0011 10 14 6.0412 -2.2421 -4.3402 11 1 6.0906 -1.2889 -5.4779 12 1 7.4028 -2.7755 -4.0820 13 1 5.1253 -3.3626 -4.6728 14 7 2.0198 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5875 -0.5219 3.5559 17 6 3.8824 -0.6455 3.9193 18 6 3.9098 -1.4106 5.0971 19 6 2.6133 -1.7179 5.3958 20 6 2.1682 -2.4875 6.5186 21 7 1.8175 -3.0990 7.4086 22 8 1.8254 -1.1701 4.4482 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7517 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8532 0.4371 -1.3574 29 1 3.9995 -1.0727 -0.4261 30 1 7.2196 -0.8008 -2.1920 31 1 2.9174 -1.1205 1.0286 32 1 1.0872 0.6162 2.5525 33 1 2.7589 1.0461 2.1182 34 1 4.7358 -0.2303 3.4039 35 1 4.7865 -1.6997 5.6576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:27 Heat of formation + Delta-G solvation = 32.713777 kcal Electronic energy + Delta-G solvation = -16993.969938 eV Core-core repulsion = 14186.564072 eV Total energy + Delta-G solvation = -2807.405866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.83445 -37.43522 -36.82109 -33.74281 -33.22036 -32.22537 -29.89805 -28.97864 -25.89297 -24.79906 -22.41198 -21.57497 -21.20678 -19.67009 -19.43250 -16.65233 -16.54633 -15.94048 -15.24572 -14.62747 -14.52779 -14.34253 -13.76957 -13.56560 -13.48971 -13.09837 -12.92328 -12.63926 -12.58917 -12.40667 -11.93137 -11.72600 -11.46466 -11.14438 -10.93884 -10.53835 -10.41295 -10.16224 -9.83883 -9.35140 -9.10801 -8.69728 -8.41290 -8.19296 -6.06049 -4.07855 0.83741 1.82188 2.20947 2.79217 3.11496 3.28977 3.35773 3.39324 3.88375 4.42103 4.45321 4.71084 4.75761 5.21255 5.30620 5.37694 5.43789 5.46955 5.66041 5.69344 5.73973 5.80929 6.08042 6.21922 6.25930 6.42433 6.45459 6.80438 6.83176 6.99184 7.08579 7.26482 7.52606 7.68757 7.73674 7.92895 8.36615 8.98491 9.56823 11.05137 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.004441 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.517149 B = 6303.558236 C = 7078.424541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.084 3.916 3 H 0.043 0.957 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.684 5.684 15 C 0.129 3.871 16 C 0.051 3.949 17 C -0.210 4.210 18 C -0.111 4.111 19 C 0.019 3.981 20 C 0.298 3.702 21 N -0.392 5.392 22 O -0.148 6.148 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.359 0.641 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 3.340 10.822 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.320 5.320 15 C 0.000 4.000 16 C -0.003 4.003 17 C -0.229 4.229 18 C -0.134 4.134 19 C -0.033 4.033 20 C -0.017 4.017 21 N -0.070 5.070 22 O -0.041 6.041 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.181 0.819 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.482 2.166 12.347 14.599 hybrid contribution 1.558 0.261 -1.395 2.107 sum -5.925 2.427 10.952 12.686 Atomic orbital electron populations 1.21817 0.95475 1.01978 1.00391 1.21645 0.94692 0.96235 0.89958 0.93902 1.21847 0.99742 0.99597 0.94143 1.19140 0.88681 0.96907 0.97006 1.21226 0.91969 1.34292 1.08339 0.92656 1.25007 0.97077 0.95568 0.96693 1.69939 1.02399 1.44165 1.36996 0.86607 0.78172 0.80000 0.83317 1.20707 1.21223 1.19844 1.60634 1.35413 1.31990 1.03997 1.20538 1.01955 0.92424 0.85071 1.22847 0.89482 0.96115 0.91830 1.21721 0.97311 1.05252 0.98664 1.21914 0.95419 0.98650 0.97411 1.16424 0.88828 1.06354 0.91716 1.23565 0.94114 0.92526 0.91454 1.81289 1.04957 1.09961 1.10842 1.84069 1.36715 1.53376 1.29955 0.92752 0.92226 0.93671 0.92312 0.92433 0.96860 0.96631 0.93006 0.81882 0.89197 0.91054 0.81820 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.42 37.16 0.35 -1.47 16 2 C 0.08 1.28 2.65 -67.71 -0.18 1.10 16 3 H 0.04 0.65 7.80 -51.93 -0.40 0.25 16 4 C -0.12 -2.19 4.74 -26.73 -0.13 -2.32 16 5 C 0.02 0.47 4.80 -27.88 -0.13 0.34 16 6 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 7 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 10 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 N -0.68 -10.16 6.30 -108.00 -0.68 -10.84 16 15 C 0.13 1.54 6.01 -4.98 -0.03 1.51 16 16 C 0.05 0.62 6.83 -35.44 -0.24 0.38 16 17 C -0.21 -2.32 10.77 -39.87 -0.43 -2.75 16 18 C -0.11 -1.13 10.84 -39.35 -0.43 -1.56 16 19 C 0.02 0.23 7.08 -38.26 -0.27 -0.04 16 20 C 0.30 3.62 15.88 -22.49 -0.36 3.26 16 21 N -0.39 -5.31 18.53 41.81 0.77 -4.53 16 22 O -0.15 -1.90 10.67 4.81 0.05 -1.84 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.38 6.43 -51.93 -0.33 0.05 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.36 5.97 6.46 -39.29 -0.25 5.71 16 32 H 0.09 0.97 7.44 -51.93 -0.39 0.58 16 33 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 34 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -29.13 309.74 -6.41 -35.54 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.68 Total: 0.40 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.26 Total: -14.48 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.83 Total: -40.35 kcal Atomic # 8 Polarization: -1.90 SS G_CDS: 0.05 Total: -1.84 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.13 -6.41 -35.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.259 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds