Wall clock time and date at job start Mon Mar 30 2020 18:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47156 * 240.00466 * 2 1 3 5 5 C 1.53000 * 109.47344 * 175.00131 * 4 2 1 6 6 C 1.50704 * 109.47172 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99785 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00188 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99678 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46984 * 90.00686 * 10 8 6 12 12 H 1.48504 * 109.46767 * 209.99981 * 10 8 6 13 13 H 1.48491 * 109.47339 * 330.00546 * 10 8 6 14 14 N 1.46898 * 109.47661 * 120.00138 * 2 1 3 15 15 C 1.46897 * 111.00152 * 275.00516 * 14 2 1 16 16 C 1.50697 * 109.47329 * 179.97438 * 15 14 2 17 17 C 1.35055 * 125.61856 * 89.99798 * 16 15 14 18 18 C 1.40475 * 107.10934 * 179.97438 * 17 16 15 19 19 C 1.36547 * 106.70482 * 359.97438 * 18 17 16 20 20 C 1.43210 * 125.98209 * 180.02562 * 19 18 17 21 21 N 8.03574 * 92.05049 * 112.69939 * 2 1 3 22 22 O 1.34052 * 125.61730 * 269.97330 * 16 15 14 23 23 H 1.08996 * 109.47027 * 60.00001 * 1 2 3 24 24 H 1.09004 * 109.46685 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46746 * 299.99724 * 1 2 3 26 26 H 1.09004 * 109.47062 * 294.99758 * 4 2 1 27 27 H 1.08994 * 109.47486 * 54.99241 * 4 2 1 28 28 H 1.09004 * 109.46737 * 299.99826 * 5 4 2 29 29 H 1.08994 * 109.47594 * 59.99707 * 5 4 2 30 30 H 0.97002 * 120.00587 * 179.97438 * 9 8 6 31 31 H 1.00903 * 111.00414 * 151.04354 * 14 2 1 32 32 H 1.08996 * 109.47601 * 59.99239 * 15 14 2 33 33 H 1.09002 * 109.47085 * 299.99443 * 15 14 2 34 34 H 1.08001 * 126.44338 * 0.23846 * 17 16 15 35 35 H 1.08000 * 126.64089 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3241 -2.5440 7 1 3.3688 -1.8051 -3.2127 8 6 5.4185 -1.3603 -2.8157 9 7 6.2690 -0.7750 -2.0011 10 14 6.0412 -2.2421 -4.3402 11 1 6.0906 -1.2889 -5.4779 12 1 7.4028 -2.7755 -4.0820 13 1 5.1253 -3.3626 -4.6728 14 7 2.0198 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5875 -0.5219 3.5559 17 6 3.8824 -0.6455 3.9193 18 6 3.9098 -1.4106 5.0971 19 6 2.6133 -1.7179 5.3958 20 6 2.1682 -2.4875 6.5186 21 7 1.8175 -3.0990 7.4086 22 8 1.8254 -1.1701 4.4482 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7517 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8532 0.4371 -1.3574 29 1 3.9995 -1.0727 -0.4261 30 1 7.2196 -0.8008 -2.1920 31 1 2.9174 -1.1205 1.0286 32 1 1.0872 0.6162 2.5525 33 1 2.7589 1.0461 2.1182 34 1 4.7358 -0.2303 3.4039 35 1 4.7865 -1.6997 5.6576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:27 Heat of formation + Delta-G solvation = 15.614596 kcal Electronic energy + Delta-G solvation = -16994.711414 eV Core-core repulsion = 14186.564072 eV Total energy + Delta-G solvation = -2808.147342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.74329 -38.68061 -37.83069 -35.39129 -34.32321 -33.58669 -31.37419 -30.14602 -27.23098 -26.30785 -23.36127 -23.13229 -22.21483 -21.05191 -20.34009 -18.51456 -17.51057 -17.20128 -16.55593 -16.40505 -15.66595 -15.34145 -14.78118 -14.60975 -14.55093 -14.38919 -14.18455 -13.95968 -13.93346 -13.54890 -13.15697 -13.08670 -12.86952 -12.80730 -12.37888 -12.31563 -11.87491 -11.54274 -11.25754 -11.03770 -10.91328 -10.49471 -9.65199 -9.32332 -8.16394 -6.25131 -0.07996 0.87967 1.31691 1.42492 1.43384 1.53874 1.86270 2.18283 2.44019 2.94576 3.17184 3.37969 3.80246 3.89387 4.10816 4.32849 4.40510 4.51269 4.54700 4.61774 4.82130 4.84609 4.91085 5.03903 5.09022 5.13986 5.27191 5.37623 5.50591 5.59116 5.76063 5.89933 5.91719 6.13642 6.16319 6.31408 6.40192 6.90980 7.43464 8.94462 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.004441 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.517149 B = 6303.558236 C = 7078.424541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.090 3.910 3 H 0.045 0.955 4 C -0.104 4.104 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.927 5.927 10 Si 0.955 3.045 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.691 5.691 15 C 0.130 3.870 16 C 0.041 3.959 17 C -0.212 4.212 18 C -0.095 4.095 19 C 0.007 3.993 20 C 0.316 3.684 21 N -0.420 5.420 22 O -0.162 6.162 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.058 0.942 28 H -0.009 1.009 29 H 0.004 0.996 30 H 0.262 0.738 31 H 0.345 0.655 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.173 0.827 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 3.462 10.678 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.019 4.019 3 H 0.063 0.937 4 C -0.142 4.142 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.567 5.567 10 Si 0.781 3.219 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.192 1.192 14 N -0.326 5.326 15 C 0.001 3.999 16 C -0.012 4.012 17 C -0.232 4.232 18 C -0.118 4.118 19 C -0.046 4.046 20 C 0.001 3.999 21 N -0.099 5.099 22 O -0.057 6.057 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.009 0.991 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.190 0.810 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.690 2.293 12.208 14.609 hybrid contribution 1.638 0.251 -1.347 2.136 sum -6.051 2.545 10.861 12.690 Atomic orbital electron populations 1.21753 0.93320 1.02038 1.01852 1.21548 0.96250 0.95622 0.88519 0.93674 1.21660 0.96361 0.99747 0.96386 1.19020 0.91903 0.94797 0.95362 1.21697 0.92416 1.34494 1.09481 0.92756 1.25832 0.97419 0.96345 0.99681 1.70046 1.02676 1.45316 1.38672 0.85591 0.77598 0.79000 0.79724 1.20013 1.20839 1.19170 1.60676 1.34542 1.32859 1.04537 1.20603 1.03200 0.92084 0.83966 1.22924 0.89886 0.96476 0.91928 1.21948 0.97244 1.05072 0.98926 1.22258 0.95730 0.97030 0.96744 1.16506 0.89276 1.07044 0.91744 1.23550 0.93324 0.91889 0.91095 1.81304 1.05786 1.11034 1.11781 1.84041 1.37349 1.53862 1.30416 0.91738 0.92842 0.91802 0.93043 0.92312 0.99086 0.97783 0.92874 0.83399 0.87716 0.90018 0.80958 0.79219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.42 71.98 0.68 -2.51 16 2 C 0.09 2.65 2.65 44.92 0.12 2.77 16 3 H 0.05 1.32 7.80 -2.39 -0.02 1.30 16 4 C -0.10 -3.91 4.74 30.59 0.15 -3.77 16 5 C 0.03 1.27 4.80 29.85 0.14 1.41 16 6 C -0.54 -29.63 9.11 25.60 0.23 -29.39 16 7 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 10 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 14 N -0.69 -19.96 6.30 -495.60 -3.12 -23.08 16 15 C 0.13 2.92 6.01 85.56 0.51 3.43 16 16 C 0.04 0.95 6.83 24.95 0.17 1.12 16 17 C -0.21 -4.38 10.77 22.08 0.24 -4.14 16 18 C -0.10 -1.75 10.84 22.42 0.24 -1.51 16 19 C 0.01 0.14 7.08 23.12 0.16 0.31 16 20 C 0.32 7.39 15.88 88.34 1.40 8.79 16 21 N -0.42 -11.15 18.53 19.00 0.35 -10.80 16 22 O -0.16 -4.00 10.67 -5.71 -0.06 -4.06 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.06 1.31 7.45 -2.39 -0.02 1.30 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.00 0.20 6.43 -2.39 -0.02 0.18 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.35 11.51 6.46 -89.69 -0.58 10.93 16 32 H 0.10 2.04 7.44 -2.39 -0.02 2.02 16 33 H 0.08 1.68 8.06 -2.39 -0.02 1.66 16 34 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -61.73 309.74 4.51 -57.22 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.52 Total: 11.64 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 4.51 Total: -22.72 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.48 Total: -87.17 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.06 Total: -4.06 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.73 4.51 -57.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.831 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds