Wall clock time and date at job start Mon Mar 30 2020 18:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47741 * 2 1 4 4 N 1.46510 * 109.47048 * 120.00230 * 2 1 3 5 5 C 1.34769 * 119.99485 * 274.99663 * 4 2 1 6 6 O 1.21579 * 120.00528 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99808 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99895 * 0.02562 * 7 5 4 9 9 C 1.37190 * 120.00515 * 179.97438 * 7 5 4 10 10 H 1.08000 * 119.99765 * 25.16305 * 9 7 5 11 11 C 1.38874 * 120.00448 * 205.16212 * 9 7 5 12 12 N 1.31476 * 119.99746 * 11.73183 * 11 9 7 13 13 Si 1.86795 * 120.00229 * 191.73153 * 11 9 7 14 14 H 1.48500 * 109.46968 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47289 * 119.99507 * 13 11 9 16 16 H 1.48495 * 109.47264 * 240.00055 * 13 11 9 17 17 C 1.50700 * 109.47036 * 239.99851 * 2 1 3 18 18 C 1.38230 * 119.99941 * 100.00113 * 17 2 1 19 19 C 1.38242 * 120.00031 * 180.02562 * 18 17 2 20 20 C 1.38227 * 119.99941 * 359.97126 * 19 18 17 21 21 C 1.38237 * 120.00241 * 0.03406 * 20 19 18 22 22 C 1.38232 * 119.99804 * 359.96565 * 21 20 19 23 23 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46630 * 299.99949 * 1 2 3 25 25 H 1.09000 * 109.47118 * 60.00008 * 1 2 3 26 26 H 0.96996 * 119.99822 * 94.99739 * 4 2 1 27 27 H 1.09000 * 109.47094 * 85.03751 * 8 7 5 28 28 H 1.08997 * 109.47193 * 205.04138 * 8 7 5 29 29 H 1.09006 * 109.46969 * 325.04157 * 8 7 5 30 30 H 0.97002 * 119.99784 * 180.02562 * 12 11 9 31 31 H 1.08006 * 120.00094 * 359.97438 * 18 17 2 32 32 H 1.08002 * 119.99801 * 179.70048 * 19 18 17 33 33 H 1.08003 * 120.00145 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.00237 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.00033 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1612 2.4118 7 7 2.5968 -0.6535 3.4574 8 6 2.9462 -2.0748 3.3914 9 6 2.7284 0.0309 4.6391 10 1 2.1274 0.9089 4.8244 11 6 3.6343 -0.4051 5.5971 12 7 4.5240 -1.3235 5.2906 13 14 3.5890 0.3130 7.3209 14 1 2.5023 1.3212 7.4086 15 1 3.3370 -0.7723 8.3028 16 1 4.8911 0.9604 7.6218 17 6 2.0323 -0.7104 -1.2304 18 6 2.4587 0.0193 -2.3242 19 6 2.9190 -0.6323 -3.4532 20 6 2.9534 -2.0137 -3.4880 21 6 2.5269 -2.7436 -2.3942 22 6 2.0667 -2.0920 -1.2654 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2490 -1.6318 1.1526 27 1 3.9723 -2.1807 3.0391 28 1 2.8550 -2.5178 4.3830 29 1 2.2714 -2.5832 2.7027 30 1 5.1565 -1.6283 5.9599 31 1 2.4315 1.0987 -2.2972 32 1 3.2476 -0.0622 -4.3095 33 1 3.3126 -2.5229 -4.3701 34 1 2.5542 -3.8229 -2.4213 35 1 1.7338 -2.6622 -0.4106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185006319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:43 Heat of formation + Delta-G solvation = 7.615263 kcal Electronic energy + Delta-G solvation = -17853.471301 eV Core-core repulsion = 15044.977082 eV Total energy + Delta-G solvation = -2808.494219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69402 -38.51567 -35.39006 -34.24676 -31.80246 -30.94282 -30.46796 -28.78339 -26.16000 -24.49983 -23.40069 -22.58727 -20.71384 -19.23097 -17.79532 -16.71320 -16.33927 -15.45111 -15.09988 -14.70414 -14.26358 -14.19983 -13.63790 -13.40194 -13.29625 -13.07532 -12.44792 -12.31505 -11.98155 -11.72284 -11.36418 -11.34590 -11.18641 -10.96132 -10.82618 -10.55539 -10.23468 -10.19301 -8.91177 -8.90579 -8.81235 -8.65588 -8.22784 -7.52519 -6.17408 -3.74120 1.36902 1.41928 3.24642 3.32598 3.39123 3.74419 3.97293 4.38813 4.43910 4.79339 4.91718 4.99824 5.13301 5.27422 5.45627 5.49871 5.55419 5.65202 5.74384 5.92702 6.01166 6.05816 6.24216 6.31199 6.44072 6.50746 6.54579 6.69386 6.88348 7.01479 7.23277 7.41771 7.68284 7.75623 8.49153 8.85270 9.35026 9.64330 10.22607 10.90143 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.038736 B = 0.005181 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.672980 B = 5402.830722 C = 5747.885916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.202 3.798 3 H 0.091 0.909 4 N -0.755 5.755 5 C 0.664 3.336 6 O -0.621 6.621 7 N -0.475 5.475 8 C 0.120 3.880 9 C -0.287 4.287 10 H 0.096 0.904 11 C 0.023 3.977 12 N -0.894 5.894 13 Si 0.926 3.074 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.079 4.079 18 C -0.110 4.110 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.112 4.112 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.387 0.613 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.015 0.985 30 H 0.263 0.737 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 -4.473 -14.387 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.096 3.904 3 H 0.109 0.891 4 N -0.414 5.414 5 C 0.367 3.633 6 O -0.504 6.504 7 N -0.199 5.199 8 C -0.024 4.024 9 C -0.415 4.415 10 H 0.113 0.887 11 C -0.178 4.178 12 N -0.535 5.535 13 Si 0.753 3.247 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.136 4.136 22 C -0.131 4.131 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.223 0.777 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.846 -3.720 -14.172 15.148 hybrid contribution 0.356 -0.364 0.813 0.959 sum -3.491 -4.084 -13.359 14.399 Atomic orbital electron populations 1.22182 0.95247 1.01737 1.02219 1.19427 0.93345 0.96523 0.81116 0.89107 1.45333 1.74101 1.13300 1.08714 1.16055 0.82549 0.84759 0.79954 1.90716 1.60546 1.14736 1.84395 1.42738 1.61830 1.08126 1.07207 1.21329 0.97483 0.82298 1.01337 1.19537 1.19891 1.11606 0.90477 0.88675 1.25288 0.94528 0.97598 1.00380 1.70025 1.17974 1.31299 1.34160 0.85865 0.78129 0.78681 0.82009 1.19387 1.20916 1.20959 1.20145 0.98164 0.93983 0.95634 1.21045 0.98727 1.00038 0.93089 1.21106 0.99997 0.94621 0.98043 1.21112 1.00675 0.94247 0.98540 1.21117 0.99173 0.99793 0.93532 1.20984 0.99884 0.94016 0.98182 0.92900 0.91377 0.92394 0.77726 0.93510 0.90476 0.96672 0.92692 0.85833 0.86171 0.86365 0.86134 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.46 37.16 0.35 -2.00 16 2 C 0.20 3.41 2.78 -69.08 -0.19 3.21 16 3 H 0.09 1.70 7.44 -51.93 -0.39 1.31 16 4 N -0.76 -14.90 4.89 -59.81 -0.29 -15.19 16 5 C 0.66 16.86 8.20 -86.92 -0.71 16.15 16 6 O -0.62 -17.80 15.73 5.30 0.08 -17.72 16 7 N -0.48 -12.62 3.01 -127.61 -0.38 -13.00 16 8 C 0.12 2.75 8.35 59.85 0.50 3.25 16 9 C -0.29 -8.26 9.23 -14.92 -0.14 -8.39 16 10 H 0.10 2.86 7.46 -52.49 -0.39 2.47 16 11 C 0.02 0.64 5.06 -17.47 -0.09 0.55 16 12 N -0.89 -24.72 10.83 55.49 0.60 -24.12 16 13 Si 0.93 21.44 29.57 -169.99 -5.03 16.42 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.08 -1.12 4.95 -104.62 -0.52 -1.63 16 18 C -0.11 -1.40 9.67 -39.58 -0.38 -1.79 16 19 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 20 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 21 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 22 C -0.11 -1.45 9.06 -39.58 -0.36 -1.81 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.39 6.86 4.71 -40.82 -0.19 6.67 16 27 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 28 H 0.08 1.87 6.78 -51.93 -0.35 1.52 16 29 H 0.01 0.28 6.63 -51.93 -0.34 -0.06 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.12 1.42 8.04 -52.48 -0.42 0.99 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.48 6.92 -52.49 -0.36 1.11 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -32.45 294.97 -7.84 -40.28 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.53 Total: 6.53 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.73 Total: 2.35 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.08 Total: -52.31 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.45 -7.84 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185006319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.897 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds