Wall clock time and date at job start Mon Mar 30 2020 18:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47741 * 2 1 4 4 N 1.46510 * 109.47048 * 120.00230 * 2 1 3 5 5 C 1.34769 * 119.99485 * 274.99663 * 4 2 1 6 6 O 1.21579 * 120.00528 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99808 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99895 * 0.02562 * 7 5 4 9 9 C 1.37190 * 120.00515 * 179.97438 * 7 5 4 10 10 H 1.08000 * 119.99765 * 25.16305 * 9 7 5 11 11 C 1.38874 * 120.00448 * 205.16212 * 9 7 5 12 12 N 1.31476 * 119.99746 * 11.73183 * 11 9 7 13 13 Si 1.86795 * 120.00229 * 191.73153 * 11 9 7 14 14 H 1.48500 * 109.46968 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47289 * 119.99507 * 13 11 9 16 16 H 1.48495 * 109.47264 * 240.00055 * 13 11 9 17 17 C 1.50700 * 109.47036 * 239.99851 * 2 1 3 18 18 C 1.38230 * 119.99941 * 100.00113 * 17 2 1 19 19 C 1.38242 * 120.00031 * 180.02562 * 18 17 2 20 20 C 1.38227 * 119.99941 * 359.97126 * 19 18 17 21 21 C 1.38237 * 120.00241 * 0.03406 * 20 19 18 22 22 C 1.38232 * 119.99804 * 359.96565 * 21 20 19 23 23 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46630 * 299.99949 * 1 2 3 25 25 H 1.09000 * 109.47118 * 60.00008 * 1 2 3 26 26 H 0.96996 * 119.99822 * 94.99739 * 4 2 1 27 27 H 1.09000 * 109.47094 * 85.03751 * 8 7 5 28 28 H 1.08997 * 109.47193 * 205.04138 * 8 7 5 29 29 H 1.09006 * 109.46969 * 325.04157 * 8 7 5 30 30 H 0.97002 * 119.99784 * 180.02562 * 12 11 9 31 31 H 1.08006 * 120.00094 * 359.97438 * 18 17 2 32 32 H 1.08002 * 119.99801 * 179.70048 * 19 18 17 33 33 H 1.08003 * 120.00145 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.00237 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.00033 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1612 2.4118 7 7 2.5968 -0.6535 3.4574 8 6 2.9462 -2.0748 3.3914 9 6 2.7284 0.0309 4.6391 10 1 2.1274 0.9089 4.8244 11 6 3.6343 -0.4051 5.5971 12 7 4.5240 -1.3235 5.2906 13 14 3.5890 0.3130 7.3209 14 1 2.5023 1.3212 7.4086 15 1 3.3370 -0.7723 8.3028 16 1 4.8911 0.9604 7.6218 17 6 2.0323 -0.7104 -1.2304 18 6 2.4587 0.0193 -2.3242 19 6 2.9190 -0.6323 -3.4532 20 6 2.9534 -2.0137 -3.4880 21 6 2.5269 -2.7436 -2.3942 22 6 2.0667 -2.0920 -1.2654 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2490 -1.6318 1.1526 27 1 3.9723 -2.1807 3.0391 28 1 2.8550 -2.5178 4.3830 29 1 2.2714 -2.5832 2.7027 30 1 5.1565 -1.6283 5.9599 31 1 2.4315 1.0987 -2.2972 32 1 3.2476 -0.0622 -4.3095 33 1 3.3126 -2.5229 -4.3701 34 1 2.5542 -3.8229 -2.4213 35 1 1.7338 -2.6622 -0.4106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185006319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:43 Heat of formation + Delta-G solvation = -12.281880 kcal Electronic energy + Delta-G solvation = -17854.334106 eV Core-core repulsion = 15044.977082 eV Total energy + Delta-G solvation = -2809.357024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14034 -39.96557 -37.05553 -36.10009 -33.75395 -32.15289 -31.67067 -29.99289 -28.13981 -26.39760 -24.66879 -23.56566 -22.01442 -20.92524 -19.45541 -18.71623 -17.55180 -17.02309 -16.61828 -16.10299 -15.98652 -15.66195 -15.10028 -14.75583 -14.59313 -14.21977 -14.08959 -13.78005 -13.28937 -13.24075 -13.15634 -13.04595 -12.67841 -12.48398 -12.30802 -12.08752 -11.91252 -11.69806 -10.97220 -10.84732 -10.03967 -9.79527 -9.65864 -9.52588 -8.26945 -5.91294 0.42628 0.52347 1.40963 1.42767 1.57053 2.14599 2.42613 2.52893 2.92882 3.18627 3.62411 3.66767 3.99236 4.16699 4.31794 4.35310 4.39168 4.52401 4.64725 4.67829 4.78760 4.92089 4.99302 5.06870 5.17895 5.25175 5.31618 5.48880 5.57714 5.62278 5.64327 5.86166 5.91345 6.13204 6.39542 6.89003 7.26948 7.66009 8.20672 8.79172 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.038736 B = 0.005181 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.672980 B = 5402.830722 C = 5747.885916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.201 3.799 3 H 0.064 0.936 4 N -0.738 5.738 5 C 0.658 3.342 6 O -0.663 6.663 7 N -0.492 5.492 8 C 0.130 3.870 9 C -0.324 4.324 10 H 0.069 0.931 11 C -0.010 4.010 12 N -0.909 5.909 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.266 1.266 16 H -0.278 1.278 17 C -0.097 4.097 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.125 4.125 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.399 0.601 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -6.000 -15.746 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.095 3.905 3 H 0.082 0.918 4 N -0.397 5.397 5 C 0.360 3.640 6 O -0.549 6.549 7 N -0.216 5.216 8 C -0.013 4.013 9 C -0.452 4.452 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.549 5.549 13 Si 0.816 3.184 14 H -0.198 1.198 15 H -0.191 1.191 16 H -0.204 1.204 17 C -0.098 4.098 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.143 4.143 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.236 0.764 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.502 -5.298 -15.576 16.821 hybrid contribution 0.284 0.084 1.114 1.153 sum -3.218 -5.215 -14.461 15.706 Atomic orbital electron populations 1.22085 0.93985 1.02551 1.01862 1.19528 0.94391 0.95333 0.81221 0.91827 1.45178 1.73018 1.13636 1.07854 1.16314 0.82127 0.84533 0.81042 1.90666 1.62167 1.16760 1.85322 1.42926 1.62196 1.09382 1.07108 1.21258 0.97882 0.80748 1.01435 1.19498 1.21157 1.12146 0.92448 0.91320 1.26061 0.93570 0.97682 1.03654 1.70104 1.17870 1.31458 1.35436 0.84895 0.77947 0.78225 0.77346 1.19832 1.19108 1.20378 1.19913 1.00406 0.94644 0.94804 1.21211 0.99104 1.00451 0.93496 1.21435 0.99027 0.95286 0.98052 1.21538 0.99214 0.94165 0.99265 1.21440 0.98211 1.01199 0.92913 1.21102 1.00507 0.93439 0.99238 0.91422 0.94437 0.89950 0.76394 0.94542 0.92027 0.92563 0.92091 0.85561 0.83618 0.83350 0.83665 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.46 71.98 0.68 -3.76 16 2 C 0.20 6.86 2.78 44.24 0.12 6.98 16 3 H 0.06 2.51 7.44 -2.39 -0.02 2.49 16 4 N -0.74 -29.44 4.89 -461.42 -2.26 -31.70 16 5 C 0.66 34.46 8.20 179.06 1.47 35.93 16 6 O -0.66 -39.85 15.73 -3.97 -0.06 -39.92 16 7 N -0.49 -26.77 3.01 -675.90 -2.04 -28.80 16 8 C 0.13 5.97 8.35 127.77 1.07 7.04 16 9 C -0.32 -19.23 9.23 84.01 0.78 -18.45 16 10 H 0.07 4.34 7.46 -2.91 -0.02 4.32 16 11 C -0.01 -0.53 5.06 84.90 0.43 -0.10 16 12 N -0.91 -50.15 10.83 21.65 0.23 -49.92 16 13 Si 0.99 44.12 29.57 68.60 2.03 46.14 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 17 C -0.10 -2.67 4.95 -19.87 -0.10 -2.77 16 18 C -0.12 -3.00 9.67 22.27 0.22 -2.78 16 19 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 20 C -0.12 -2.17 10.05 22.27 0.22 -1.94 16 21 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.12 -2.99 9.06 22.27 0.20 -2.78 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.40 13.88 4.71 -92.71 -0.44 13.45 16 27 H 0.04 1.72 7.85 -2.39 -0.02 1.70 16 28 H 0.06 2.99 6.78 -2.39 -0.02 2.98 16 29 H 0.06 2.06 6.63 -2.38 -0.02 2.04 16 30 H 0.27 13.92 8.31 -92.71 -0.77 13.14 16 31 H 0.13 2.85 8.04 -2.91 -0.02 2.83 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.12 2.79 6.92 -2.91 -0.02 2.77 16 Total: -1.00 -71.85 294.97 4.09 -67.76 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.65 Total: 23.25 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.53 Total: 13.19 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -4.06 Total: -110.42 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.06 Total: -39.92 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.85 4.09 -67.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185006319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.477 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds