Wall clock time and date at job start Mon Mar 30 2020 18:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47350 * 2 1 4 4 C 1.38131 * 120.03839 * 265.26354 * 3 2 1 5 5 C 1.38262 * 120.06673 * 180.29007 * 4 3 2 6 6 C 1.38299 * 120.14513 * 359.70291 * 5 4 3 7 7 C 1.38087 * 120.07550 * 0.02562 * 6 5 4 8 8 C 1.38861 * 120.02967 * 85.00018 * 3 2 1 9 9 N 1.39897 * 120.07554 * 0.02562 * 8 3 2 10 10 C 1.34778 * 120.00045 * 154.95010 * 9 8 3 11 11 O 1.21583 * 119.99863 * 354.17259 * 10 9 8 12 12 N 1.34778 * 119.99858 * 173.90329 * 10 9 8 13 13 C 1.46500 * 120.00241 * 0.27550 * 12 10 9 14 14 C 1.37171 * 119.99720 * 180.27683 * 12 10 9 15 15 H 1.07994 * 119.99962 * 34.59114 * 14 12 10 16 16 C 1.38884 * 119.99725 * 214.58714 * 14 12 10 17 17 N 1.31475 * 120.00141 * 355.12699 * 16 14 12 18 18 Si 1.86800 * 120.00064 * 175.12440 * 16 14 12 19 19 H 1.48496 * 109.46843 * 59.99979 * 18 16 14 20 20 H 1.48498 * 109.47092 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46976 * 300.00335 * 18 16 14 22 22 H 1.08997 * 109.47166 * 299.99115 * 1 2 3 23 23 H 1.08997 * 109.47312 * 60.00047 * 1 2 3 24 24 H 1.09003 * 109.46572 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47018 * 240.00227 * 2 1 3 26 26 H 1.09001 * 109.47605 * 120.00321 * 2 1 3 27 27 H 1.08001 * 119.96710 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.92606 * 179.71872 * 5 4 3 29 29 H 1.08007 * 119.96485 * 180.02562 * 6 5 4 30 30 H 1.07997 * 120.04315 * 180.02562 * 7 6 5 31 31 H 0.97006 * 120.00218 * 334.95422 * 9 8 3 32 32 H 1.08999 * 109.47214 * 94.76355 * 13 12 10 33 33 H 1.09001 * 109.47280 * 214.76519 * 13 12 10 34 34 H 1.08996 * 109.46920 * 334.76059 * 13 12 10 35 35 H 0.96998 * 120.00002 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3560 2.0398 -1.1917 5 6 2.8226 3.3413 -1.1919 6 6 2.9612 4.0296 -0.0004 7 6 2.6341 3.4185 1.1939 8 6 2.1652 2.1109 1.1976 9 7 1.8337 1.4886 2.4059 10 6 2.4002 1.9045 3.5559 11 8 3.2765 2.7471 3.5319 12 7 1.9917 1.3905 4.7329 13 6 0.9359 0.3752 4.7618 14 6 2.5644 1.8180 5.9037 15 1 2.8784 2.8460 6.0073 16 6 2.7403 0.9286 6.9559 17 7 2.2721 -0.2967 6.8662 18 14 3.6420 1.4734 8.4984 19 1 2.9241 2.6188 9.1130 20 1 3.6960 0.3466 9.4642 21 1 5.0234 1.8876 8.1440 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.2492 1.5049 -2.1238 28 1 3.0793 3.8215 -2.1246 29 1 3.3256 5.0463 -0.0040 30 1 2.7421 3.9566 2.1240 31 1 1.1960 0.7577 2.4160 32 1 1.3865 -0.6172 4.7775 33 1 0.3254 0.5111 5.6545 34 1 0.3103 0.4763 3.8750 35 1 2.3953 -0.9179 7.6009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187627489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:48 Heat of formation + Delta-G solvation = 6.131928 kcal Electronic energy + Delta-G solvation = -18110.947722 eV Core-core repulsion = 15302.389180 eV Total energy + Delta-G solvation = -2808.558541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05226 -38.18731 -34.94355 -34.37267 -33.27348 -31.59827 -29.43728 -28.53262 -26.30516 -24.53173 -23.63694 -22.31837 -20.59352 -19.51893 -17.86092 -16.80826 -16.38793 -15.52632 -15.16098 -14.57020 -14.34559 -13.99850 -13.61083 -13.39101 -13.28869 -12.93267 -12.67900 -12.15767 -11.92660 -11.59033 -11.45029 -11.29936 -11.19656 -10.96456 -10.75938 -10.62646 -10.45099 -10.35044 -9.75872 -8.95057 -8.78220 -8.31647 -7.69639 -7.33489 -6.30616 -3.96422 1.75171 1.87371 3.21372 3.26149 3.29965 3.69392 4.02552 4.27071 4.45726 4.97890 5.07059 5.14638 5.23754 5.36203 5.43004 5.51952 5.62483 5.75115 5.90432 5.97777 6.05780 6.17546 6.19818 6.32717 6.45931 6.74042 6.79917 6.89933 6.98741 7.14185 7.16684 7.55128 7.59452 7.67948 8.33622 8.66886 9.18234 9.41667 10.01142 10.74808 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.006153 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.046322 B = 4549.430117 C = 5245.024894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.098 4.098 5 C -0.160 4.160 6 C -0.104 4.104 7 C -0.135 4.135 8 C 0.197 3.803 9 N -0.691 5.691 10 C 0.653 3.347 11 O -0.600 6.600 12 N -0.464 5.464 13 C 0.113 3.887 14 C -0.295 4.295 15 H 0.093 0.907 16 C 0.035 3.965 17 N -0.888 5.888 18 Si 0.928 3.072 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.400 0.600 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.016 0.984 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 0.075 -12.013 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.180 4.180 6 C -0.123 4.123 7 C -0.156 4.156 8 C 0.099 3.901 9 N -0.339 5.339 10 C 0.356 3.644 11 O -0.481 6.481 12 N -0.187 5.187 13 C -0.031 4.031 14 C -0.423 4.423 15 H 0.111 0.889 16 C -0.168 4.168 17 N -0.527 5.527 18 Si 0.754 3.246 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.167 0.833 31 H 0.237 0.763 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.737 0.443 -11.690 12.281 hybrid contribution 0.115 -0.344 0.823 0.899 sum -3.623 0.100 -10.867 11.455 Atomic orbital electron populations 1.21779 0.95131 1.01509 1.02103 1.20419 0.95780 0.93008 1.02774 1.19503 1.06147 0.96127 0.92210 1.20649 0.99650 0.95014 0.96335 1.20905 1.04028 0.95366 0.97690 1.20998 0.99575 0.99534 0.92160 1.21590 1.00734 0.93605 0.99699 1.17535 0.96680 0.91441 0.84472 1.43118 1.47443 1.38367 1.04935 1.16226 0.82653 0.85424 0.80079 1.90698 1.34561 1.37548 1.85341 1.42737 1.33946 1.38855 1.03134 1.21537 0.89824 0.93275 0.98427 1.19340 1.38376 0.95996 0.88635 0.88933 1.25486 0.96443 0.94782 1.00123 1.69933 1.44509 1.05114 1.33178 0.85983 0.80353 0.77898 0.80317 1.19907 1.20997 1.19780 0.92800 0.92517 0.92430 0.91081 0.91236 0.86600 0.86901 0.86515 0.83265 0.76315 0.91850 0.91319 0.96551 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.81 37.16 0.36 -1.29 16 2 C -0.08 -1.06 5.44 -27.88 -0.15 -1.22 16 3 C -0.14 -2.12 5.15 -104.43 -0.54 -2.66 16 4 C -0.10 -1.36 9.68 -39.61 -0.38 -1.75 16 5 C -0.16 -2.25 10.04 -39.55 -0.40 -2.64 16 6 C -0.10 -1.65 10.04 -39.61 -0.40 -2.05 16 7 C -0.14 -2.62 8.71 -39.39 -0.34 -2.96 16 8 C 0.20 3.73 6.41 -83.70 -0.54 3.19 16 9 N -0.69 -13.96 4.82 -14.23 -0.07 -14.02 16 10 C 0.65 16.31 8.04 -86.92 -0.70 15.61 16 11 O -0.60 -16.71 13.34 5.29 0.07 -16.63 16 12 N -0.46 -11.95 3.00 -127.62 -0.38 -12.33 16 13 C 0.11 2.50 8.53 59.85 0.51 3.01 16 14 C -0.30 -8.23 9.03 -14.92 -0.13 -8.37 16 15 H 0.09 2.67 7.63 -52.49 -0.40 2.27 16 16 C 0.03 0.92 5.39 -17.47 -0.09 0.83 16 17 N -0.89 -23.68 10.67 55.49 0.59 -23.09 16 18 Si 0.93 20.99 29.56 -169.99 -5.02 15.97 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 26 H 0.07 0.97 7.26 -51.93 -0.38 0.60 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 30 H 0.15 3.29 5.79 -52.49 -0.30 2.98 16 31 H 0.40 7.07 4.47 -40.82 -0.18 6.89 16 32 H 0.06 1.46 7.26 -51.93 -0.38 1.09 16 33 H 0.07 1.58 7.63 -51.93 -0.40 1.18 16 34 H 0.02 0.29 6.20 -51.93 -0.32 -0.03 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 289.49 15.07 4.36 4.36 Total: -1.00 -30.56 289.49 -7.66 -38.22 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.41 Total: 7.82 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.80 Total: -0.29 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.14 Total: -49.45 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.07 Total: -16.63 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.56 -7.66 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187627489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.356 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds