Wall clock time and date at job start Mon Mar 30 2020 18:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99524 * 2 1 4 4 C 1.34769 * 120.00353 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99970 * 0.02562 * 4 2 1 6 6 C 1.50694 * 120.00267 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47263 * 180.02562 * 6 4 2 8 8 C 1.36850 * 119.99797 * 263.79462 * 7 6 4 9 9 H 1.08006 * 119.99767 * 199.03232 * 8 7 6 10 10 C 1.38791 * 120.00025 * 19.02985 * 8 7 6 11 11 N 1.31588 * 119.99888 * 19.90073 * 10 8 7 12 12 Si 1.86798 * 120.00100 * 199.89296 * 10 8 7 13 13 H 1.48508 * 109.47107 * 60.00240 * 12 10 8 14 14 H 1.48494 * 109.47361 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.47190 * 300.00630 * 12 10 8 16 16 C 1.39299 * 120.00215 * 83.79633 * 7 6 4 17 17 C 1.39076 * 120.08850 * 180.02562 * 16 7 6 18 18 C 1.38055 * 119.90641 * 179.97438 * 17 16 7 19 19 C 1.38327 * 120.09417 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.17510 * 359.97438 * 19 18 17 21 21 C 1.38050 * 120.09220 * 0.02562 * 20 19 18 22 22 H 1.08996 * 109.47191 * 269.99420 * 1 2 3 23 23 H 1.08997 * 109.47359 * 30.00229 * 1 2 3 24 24 H 1.09005 * 109.46574 * 149.99803 * 1 2 3 25 25 H 1.08999 * 109.47219 * 239.99778 * 3 2 1 26 26 H 1.08995 * 109.47348 * 0.02562 * 3 2 1 27 27 H 1.09005 * 109.46693 * 120.00050 * 3 2 1 28 28 H 1.08997 * 109.47550 * 59.99789 * 6 4 2 29 29 H 1.09004 * 109.46829 * 299.99840 * 6 4 2 30 30 H 0.96999 * 119.99772 * 179.97438 * 11 10 8 31 31 H 1.07997 * 120.05021 * 359.70147 * 17 16 7 32 32 H 1.08000 * 119.95490 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.91283 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.95215 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.04675 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5326 -2.2175 -0.0015 6 6 3.6459 -1.1671 0.0001 7 7 4.1343 -2.5483 -0.0013 8 6 4.4827 -3.1519 1.1764 9 1 5.1165 -4.0265 1.1681 10 6 4.0217 -2.6404 2.3814 11 7 2.9690 -1.8511 2.4014 12 14 4.8954 -3.0725 3.9749 13 1 6.3060 -2.6130 3.9064 14 1 4.2115 -2.4047 5.1113 15 1 4.8633 -4.5438 4.1739 16 6 4.2441 -3.2471 -1.2013 17 6 4.7070 -4.5585 -1.2046 18 6 4.8138 -5.2478 -2.3960 19 6 4.4617 -4.6356 -3.5854 20 6 4.0008 -3.3313 -3.5864 21 6 3.8910 -2.6352 -2.3993 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 2.8241 1.3266 -0.8899 26 1 1.4891 2.0972 0.0005 27 1 2.8241 1.3265 0.8900 28 1 4.0090 -0.6538 0.8905 29 1 4.0096 -0.6526 -0.8895 30 1 2.6466 -1.4939 3.2436 31 1 4.9867 -5.0357 -0.2770 32 1 5.1736 -6.2661 -2.3996 33 1 4.5467 -5.1774 -4.5158 34 1 3.7264 -2.8570 -4.5171 35 1 3.5315 -1.6167 -2.4009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072971170.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:48 Heat of formation + Delta-G solvation = 2.269694 kcal Electronic energy + Delta-G solvation = -18621.667594 eV Core-core repulsion = 15812.941573 eV Total energy + Delta-G solvation = -2808.726020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86626 -39.57006 -37.15371 -36.06775 -33.81326 -31.72933 -30.59758 -29.45448 -28.23445 -26.63078 -25.34935 -23.02430 -22.01651 -20.23060 -19.01496 -18.49201 -17.70360 -16.82976 -16.58677 -16.39085 -15.79869 -15.75136 -14.92448 -14.52073 -14.41922 -14.15853 -13.78100 -13.51942 -13.46279 -13.37368 -13.30414 -12.90130 -12.75759 -12.46012 -12.40557 -12.21103 -11.93608 -11.57185 -11.34197 -10.53367 -10.20781 -9.55624 -9.38835 -8.44658 -8.19831 -5.63342 0.85288 1.00597 1.40945 1.46497 1.51168 2.16637 2.26078 2.46079 2.94090 3.17806 3.41256 4.01125 4.25599 4.35711 4.41192 4.42239 4.54307 4.58061 4.63929 4.71803 4.85003 4.90407 4.94557 4.97930 5.00578 5.20069 5.43916 5.47702 5.79465 5.86777 5.89752 6.00443 6.07261 6.49743 6.64021 6.80203 7.43909 7.71977 7.78748 8.74943 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.011720 C = 0.007214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.654260 B = 2388.535647 C = 3880.253675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.638 5.638 3 C 0.083 3.917 4 C 0.535 3.465 5 O -0.576 6.576 6 C 0.140 3.860 7 N -0.459 5.459 8 C -0.326 4.326 9 H 0.091 0.909 10 C -0.016 4.016 11 N -0.890 5.890 12 Si 0.988 3.012 13 H -0.264 1.264 14 H -0.284 1.284 15 H -0.278 1.278 16 C 0.197 3.803 17 C -0.240 4.240 18 C -0.070 4.070 19 C -0.231 4.231 20 C -0.068 4.068 21 C -0.245 4.245 22 H 0.037 0.963 23 H 0.103 0.897 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.263 0.737 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 7.048 -5.804 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.375 5.375 3 C -0.059 4.059 4 C 0.324 3.676 5 O -0.453 6.453 6 C 0.012 3.988 7 N -0.148 5.148 8 C -0.454 4.454 9 H 0.109 0.891 10 C -0.217 4.217 11 N -0.527 5.527 12 Si 0.813 3.187 13 H -0.189 1.189 14 H -0.209 1.209 15 H -0.203 1.203 16 C 0.084 3.916 17 C -0.264 4.264 18 C -0.089 4.089 19 C -0.252 4.252 20 C -0.086 4.086 21 C -0.269 4.269 22 H 0.055 0.945 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.040 6.759 -5.368 8.631 hybrid contribution -0.029 -0.256 1.356 1.380 sum 0.011 6.503 -4.012 7.641 Atomic orbital electron populations 1.21521 0.79745 1.02669 1.00780 1.47857 1.07052 1.06813 1.75741 1.21874 0.97753 0.84602 1.01707 1.21110 0.90918 0.82790 0.72815 1.90537 1.70702 1.33394 1.50699 1.20969 0.90648 0.85138 1.02007 1.42335 1.59338 1.09897 1.03257 1.19685 1.28049 1.14307 0.83382 0.89141 1.25970 0.95550 0.98295 1.01877 1.70091 1.20507 1.34743 1.27381 0.85056 0.78527 0.78119 0.76995 1.18876 1.20897 1.20345 1.18352 0.94622 0.91747 0.86893 1.20644 1.12351 0.94732 0.98638 1.21014 0.96903 0.99129 0.91848 1.20871 1.10103 0.96351 0.97922 1.20981 0.96303 0.94690 0.96660 1.20516 1.13305 1.00843 0.92263 0.94452 0.87817 0.93841 0.91339 0.87731 0.93199 0.88277 0.90009 0.92742 0.88177 0.85087 0.84717 0.84583 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 10.41 127.77 1.33 4.39 16 2 N -0.64 -23.54 3.27 -871.90 -2.85 -26.40 16 3 C 0.08 2.14 9.74 127.77 1.24 3.39 16 4 C 0.53 25.56 5.58 87.66 0.49 26.05 16 5 O -0.58 -33.70 15.53 -3.04 -0.05 -33.75 16 6 C 0.14 6.53 3.56 85.63 0.30 6.84 16 7 N -0.46 -24.19 2.27 -515.90 -1.17 -25.36 16 8 C -0.33 -17.99 9.11 84.04 0.77 -17.22 16 9 H 0.09 4.94 6.07 -2.91 -0.02 4.92 16 10 C -0.02 -0.86 4.89 84.86 0.41 -0.45 16 11 N -0.89 -48.63 9.19 21.65 0.20 -48.43 16 12 Si 0.99 42.49 29.60 68.60 2.03 44.52 16 13 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.20 9.81 6.35 38.36 0.24 10.06 16 17 C -0.24 -11.36 9.28 22.43 0.21 -11.15 16 18 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 19 C -0.23 -8.25 10.04 22.31 0.22 -8.03 16 20 C -0.07 -2.51 10.04 22.25 0.22 -2.29 16 21 C -0.25 -10.76 9.11 22.43 0.20 -10.55 16 22 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.10 2.26 7.92 -2.39 -0.02 2.24 16 24 H 0.04 1.60 7.42 -2.38 -0.02 1.58 16 25 H 0.07 1.55 7.85 -2.39 -0.02 1.53 16 26 H 0.10 1.88 7.79 -2.39 -0.02 1.86 16 27 H 0.05 1.38 7.85 -2.38 -0.02 1.36 16 28 H 0.10 4.75 6.20 -2.39 -0.01 4.73 16 29 H 0.08 3.29 6.27 -2.39 -0.01 3.28 16 30 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.10 4.90 6.11 -2.91 -0.02 4.88 16 32 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.10 4.30 6.17 -2.91 -0.02 4.28 16 Total: -1.00 -71.65 289.61 5.12 -66.54 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.08 Total: 24.36 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.88 Total: -1.49 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -3.83 Total: -100.18 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.05 Total: -33.75 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.65 5.12 -66.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072971170.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.805 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds