Wall clock time and date at job start Mon Mar 30 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46897 * 111.00017 * 2 1 4 4 C 1.50693 * 109.47150 * 66.04612 * 3 2 1 5 5 C 1.34517 * 125.79008 * 89.99933 * 4 3 2 6 6 C 1.41389 * 106.84149 * 179.97438 * 5 4 3 7 7 C 1.34514 * 106.83921 * 359.97438 * 6 5 4 8 8 O 1.34304 * 108.42353 * 359.73918 * 7 6 5 9 9 C 1.46898 * 110.99721 * 236.04382 * 2 1 3 10 10 C 1.53008 * 109.46970 * 199.70085 * 9 2 1 11 11 H 1.09004 * 109.46746 * 304.61040 * 10 9 2 12 12 C 1.47200 * 109.46956 * 64.60978 * 10 9 2 13 13 N 3.65929 * 124.16448 * 157.02403 * 2 1 3 14 14 C 1.52996 * 109.46970 * 184.61087 * 10 9 2 15 15 C 1.50704 * 109.47049 * 174.99455 * 14 10 9 16 16 H 1.07997 * 119.99687 * 0.02562 * 15 14 10 17 17 C 1.37877 * 120.00159 * 179.97438 * 15 14 10 18 18 N 1.31509 * 119.99888 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99949 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46773 * 90.00553 * 19 17 15 21 21 H 1.48500 * 109.47039 * 210.00529 * 19 17 15 22 22 H 1.48491 * 109.47215 * 330.00787 * 19 17 15 23 23 H 1.08993 * 109.47031 * 188.33392 * 1 2 3 24 24 H 1.08998 * 109.46855 * 308.34281 * 1 2 3 25 25 H 1.09000 * 109.46460 * 68.33517 * 1 2 3 26 26 H 1.09002 * 109.46551 * 186.04568 * 3 2 1 27 27 H 1.08996 * 109.46949 * 306.04283 * 3 2 1 28 28 H 1.07998 * 126.57954 * 359.96187 * 5 4 3 29 29 H 1.07990 * 126.57778 * 179.97438 * 6 5 4 30 30 H 1.07998 * 125.78929 * 180.02562 * 7 6 5 31 31 H 1.08995 * 109.47409 * 79.70210 * 9 2 1 32 32 H 1.09001 * 109.47463 * 319.69498 * 9 2 1 33 33 H 1.09002 * 109.47416 * 294.99956 * 14 10 9 34 34 H 1.09005 * 109.47589 * 54.99980 * 14 10 9 35 35 H 0.97000 * 119.99872 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.3808 2.0424 2.4192 6 6 1.6713 2.7929 3.3848 7 6 0.5366 3.2117 2.7961 8 8 0.5241 2.7621 1.5306 9 6 1.9954 -0.7660 -1.1376 10 6 3.4462 -1.1635 -0.8572 11 1 4.0306 -0.2710 -0.6334 12 6 3.4900 -2.0802 0.2937 13 7 3.5240 -2.7876 1.1819 14 6 4.0307 -1.8608 -2.0872 15 6 5.4932 -2.1423 -1.8574 16 1 5.9591 -1.8531 -0.9270 17 6 6.2364 -2.7699 -2.8346 18 7 5.6689 -3.1224 -3.9674 19 14 8.0491 -3.1194 -2.5495 20 1 8.2027 -4.4570 -1.9230 21 1 8.7681 -3.0957 -3.8486 22 1 8.6175 -2.0834 -1.6502 23 1 -0.3633 -1.0167 0.1489 24 1 -0.3633 0.6375 0.8060 25 1 -0.3632 0.3794 -0.9551 26 1 3.0798 1.3443 -0.1082 27 1 1.5612 1.9272 -0.8309 28 1 3.3365 1.5582 2.5554 29 1 1.9809 2.9917 4.4001 30 1 -0.2316 3.8119 3.2607 31 1 1.9541 -0.1537 -2.0383 32 1 1.3940 -1.6638 -1.2806 33 1 3.5026 -2.7989 -2.2584 34 1 3.9174 -1.2159 -2.9587 35 1 6.1918 -3.5636 -4.6551 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078316022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:03 Heat of formation + Delta-G solvation = 37.772292 kcal Electronic energy + Delta-G solvation = -17432.558176 eV Core-core repulsion = 14625.371664 eV Total energy + Delta-G solvation = -2807.186512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54317 -38.11208 -35.69509 -33.62459 -32.98385 -31.85110 -30.45560 -27.44474 -26.52707 -24.39926 -21.87151 -21.75746 -21.60770 -20.28243 -17.47883 -16.86080 -16.44623 -16.06681 -15.23581 -15.15202 -14.54100 -14.34993 -13.86903 -13.11609 -12.95398 -12.79202 -12.65782 -12.45565 -12.16907 -11.98351 -11.89266 -11.66798 -11.42347 -11.19552 -11.03899 -10.70465 -10.52901 -10.20089 -9.88884 -9.55146 -9.24023 -8.54518 -8.45797 -8.24656 -6.10084 -4.13161 1.70950 2.64098 2.97170 3.30005 3.36653 3.39853 3.74730 3.85852 4.09486 4.41565 4.65409 4.89436 4.98599 5.05588 5.23743 5.28334 5.33782 5.38510 5.50297 5.72968 5.74269 5.82952 5.93944 5.96505 6.00014 6.12075 6.32460 6.46995 6.52292 6.99847 7.06417 7.18293 7.41388 7.51962 7.85261 8.22647 8.60688 8.91640 9.52496 11.00846 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.031850 B = 0.004748 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.909950 B = 5895.791085 C = 6163.085652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.130 3.870 4 C -0.001 4.001 5 C -0.192 4.192 6 C -0.213 4.213 7 C -0.050 4.050 8 O -0.180 6.180 9 C 0.061 3.939 10 C 0.011 3.989 11 H 0.099 0.901 12 C 0.256 3.744 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.111 0.889 27 H 0.054 0.946 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.199 0.801 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 12.901 7.168 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C 0.003 3.997 4 C -0.052 4.052 5 C -0.212 4.212 6 C -0.232 4.232 7 C -0.117 4.117 8 O -0.076 6.076 9 C -0.067 4.067 10 C -0.011 4.011 11 H 0.117 0.883 12 C -0.061 4.061 13 N -0.156 5.156 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.215 0.785 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.510 11.566 8.540 17.809 hybrid contribution 0.878 0.395 -0.654 1.164 sum -9.632 11.961 7.885 17.263 Atomic orbital electron populations 1.22404 0.87108 1.02460 1.00355 1.62034 1.08122 1.11975 1.44530 1.20631 1.01681 0.87704 0.89720 1.22298 0.86296 0.98126 0.98432 1.21625 1.02709 1.04132 0.92735 1.21845 0.96386 1.03729 1.01270 1.23932 1.01061 1.04099 0.82648 1.84007 1.39347 1.54376 1.29900 1.22296 0.95478 0.98051 0.90838 1.19234 0.95322 0.95498 0.91007 0.88323 1.28819 0.91260 0.92981 0.93000 1.80981 1.10349 1.11458 1.12832 1.19185 0.95864 0.96068 0.89689 1.21136 0.94257 1.39182 1.01826 0.92480 1.24943 0.98550 0.95349 0.95062 1.69934 1.36384 1.40590 1.06145 0.86599 0.85066 0.78906 0.77560 1.20639 1.21114 1.19730 0.91235 0.91558 0.95293 0.87067 0.92810 0.83410 0.83718 0.78468 0.92197 0.89854 0.95533 0.94395 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.38 60.07 0.56 0.86 16 2 N -0.54 -7.42 4.37 -244.37 -1.07 -8.49 16 3 C 0.13 1.60 5.32 -4.98 -0.03 1.57 16 4 C 0.00 -0.02 5.89 -35.63 -0.21 -0.23 16 5 C -0.19 -2.50 10.81 -39.70 -0.43 -2.93 16 6 C -0.21 -2.39 10.91 -39.70 -0.43 -2.82 16 7 C -0.05 -0.51 12.09 29.42 0.36 -0.15 16 8 O -0.18 -2.23 9.84 5.69 0.06 -2.17 16 9 C 0.06 0.89 4.36 -3.82 -0.02 0.87 16 10 C 0.01 0.21 2.26 -93.40 -0.21 -0.01 16 11 H 0.10 1.65 6.67 -51.93 -0.35 1.30 16 12 C 0.26 5.35 13.66 -20.76 -0.28 5.07 16 13 N -0.48 -10.95 18.54 42.15 0.78 -10.17 16 14 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 15 C -0.53 -13.83 8.60 -34.44 -0.30 -14.13 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.81 6.43 -51.93 -0.33 0.48 16 25 H 0.03 0.31 8.13 -51.93 -0.42 -0.11 16 26 H 0.11 1.31 6.57 -51.93 -0.34 0.97 16 27 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 32 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -30.97 306.41 -5.87 -36.84 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.76 Total: -2.51 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.21 Total: -9.69 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.45 Total: -43.23 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: 0.06 Total: -2.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.97 -5.87 -36.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078316022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds