Wall clock time and date at job start Mon Mar 30 2020 18:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.50701 * 109.47175 * 170.00045 * 4 2 1 6 6 C 1.38370 * 119.84750 * 269.72968 * 5 4 2 7 7 C 1.37942 * 120.15116 * 179.71912 * 6 5 4 8 8 C 1.39647 * 119.84408 * 0.56924 * 7 6 5 9 9 C 1.47723 * 120.14935 * 179.68093 * 8 7 6 10 10 O 1.21595 * 120.00149 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00096 * 0.02562 * 9 8 7 12 12 C 1.36869 * 120.00004 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99921 * 359.97438 * 12 11 9 14 14 C 1.39052 * 120.00085 * 180.02562 * 12 11 9 15 15 N 1.31356 * 119.99986 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00003 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46942 * 89.99902 * 16 14 12 18 18 H 1.48504 * 109.47327 * 209.99904 * 16 14 12 19 19 H 1.48502 * 109.47519 * 330.00031 * 16 14 12 20 20 C 1.39647 * 119.69846 * 359.70602 * 8 7 6 21 21 C 1.37937 * 119.84550 * 359.97438 * 20 8 7 22 22 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 23 23 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 24 24 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 25 25 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 26 26 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 28 28 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 29 29 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 30 30 H 1.07999 * 119.92894 * 359.97438 * 6 5 4 31 31 H 1.07995 * 120.07699 * 180.24924 * 7 6 5 32 32 H 0.96997 * 120.00196 * 359.97438 * 11 9 8 33 33 H 0.96998 * 120.00165 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.07571 * 179.97438 * 20 8 7 35 35 H 1.07998 * 119.91940 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9729 6 6 3.9666 -2.0627 0.3044 7 6 5.3257 -2.2367 0.1450 8 6 6.2132 -1.2953 0.6706 9 6 7.6702 -1.4787 0.5099 10 8 8.4406 -0.6575 0.9690 11 7 8.1457 -2.5561 -0.1455 12 6 9.4956 -2.7262 -0.2939 13 1 10.1798 -1.9968 0.1139 14 6 9.9861 -3.8376 -0.9705 15 7 9.1539 -4.7244 -1.4669 16 14 11.8285 -4.0693 -1.1737 17 1 12.3596 -4.8447 -0.0238 18 1 12.0988 -4.8059 -2.4345 19 1 12.4919 -2.7417 -1.2241 20 6 5.7172 -0.1801 1.3491 21 6 4.3555 -0.0152 1.4954 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0708 24 1 -0.3633 0.4513 0.9233 25 1 1.6459 1.8948 0.8900 26 1 3.0850 1.3424 -0.0005 27 1 1.6459 1.8948 -0.8900 28 1 1.7975 -0.2247 2.0628 29 1 1.5090 -1.7406 1.1758 30 1 3.2793 -2.7926 -0.0971 31 1 5.7026 -3.1017 -0.3804 32 1 7.5312 -3.2114 -0.5114 33 1 9.4961 -5.4994 -1.9393 34 1 6.3981 0.5515 1.7583 35 1 3.9706 0.8470 2.0195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101516768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:15:57 Heat of formation + Delta-G solvation = -9.723594 kcal Electronic energy + Delta-G solvation = -17269.628013 eV Core-core repulsion = 14460.381925 eV Total energy + Delta-G solvation = -2809.246088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.48497 -37.98838 -36.56701 -34.07334 -31.81123 -31.11693 -30.42745 -27.67721 -27.12350 -24.98125 -22.79516 -22.13380 -21.08108 -19.38314 -18.17579 -16.63284 -15.73799 -15.55916 -15.47294 -14.84712 -14.43338 -14.22035 -13.69247 -13.65360 -13.55181 -13.08623 -12.55591 -12.42583 -12.24662 -11.94389 -11.79149 -11.62553 -11.55181 -11.13163 -10.99421 -10.63029 -10.42400 -10.25754 -9.62068 -8.61281 -8.51832 -8.47989 -8.25141 -8.05875 -6.55162 -3.88141 1.37594 1.80657 3.14284 3.22054 3.28276 3.59216 4.06886 4.09949 4.55912 4.81165 4.93203 4.96797 5.08053 5.19551 5.30450 5.30853 5.36751 5.39030 5.50891 5.59349 5.66266 5.82671 5.89010 5.93624 6.12012 6.31050 6.41147 6.74844 6.81683 6.89622 6.94796 6.98289 7.33294 7.43790 7.97514 8.51885 9.07098 9.43716 9.99496 10.61840 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.046642 B = 0.004299 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.173445 B = 6511.455055 C = 6877.994181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.018 3.982 4 C 0.097 3.903 5 C -0.087 4.087 6 C -0.102 4.102 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.464 3.536 10 O -0.599 6.599 11 N -0.543 5.543 12 C -0.295 4.295 13 H 0.108 0.892 14 C 0.023 3.977 15 N -0.890 5.890 16 Si 0.935 3.065 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.079 4.079 21 C -0.122 4.122 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.394 0.606 33 H 0.276 0.724 34 H 0.130 0.870 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.706 5.244 2.559 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.130 4.130 4 C -0.030 4.030 5 C -0.088 4.088 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.095 4.095 9 C 0.252 3.748 10 O -0.486 6.486 11 N -0.177 5.177 12 C -0.425 4.425 13 H 0.125 0.875 14 C -0.180 4.180 15 N -0.530 5.530 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.099 4.099 21 C -0.141 4.141 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.974 5.346 2.295 16.065 hybrid contribution 0.203 -0.228 0.320 0.442 sum -14.771 5.119 2.615 15.850 Atomic orbital electron populations 1.22387 0.87408 1.02218 1.00339 1.61982 1.07376 1.14224 1.43005 1.22499 1.02013 0.88277 1.00173 1.21038 0.92036 0.98583 0.91373 1.19646 0.94096 0.95548 0.99545 1.20824 0.94950 0.97506 0.98747 1.21426 0.93111 0.98860 0.99001 1.20364 0.94536 0.95595 0.98956 1.17787 0.86872 0.84610 0.85505 1.90587 1.58187 1.45256 1.54601 1.41904 1.08263 1.20516 1.46979 1.19846 0.82511 1.07445 1.32708 0.87451 1.25384 1.00879 0.95370 0.96356 1.69586 1.35514 1.11930 1.35924 0.85778 0.81533 0.78800 0.77775 1.20167 1.20711 1.19167 1.21157 0.94679 0.96958 0.97077 1.20876 0.93048 0.98850 1.01294 0.91384 0.91347 0.95844 0.95843 0.90327 0.91567 0.94150 0.90043 0.86122 0.85531 0.77097 0.91438 0.85198 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.57 60.07 0.57 0.79 16 2 N -0.54 -6.09 5.01 -252.72 -1.27 -7.36 16 3 C 0.02 0.20 9.24 60.06 0.56 0.75 16 4 C 0.10 1.09 5.11 -4.98 -0.03 1.06 16 5 C -0.09 -1.22 4.90 -104.52 -0.51 -1.73 16 6 C -0.10 -1.54 9.68 -39.64 -0.38 -1.92 16 7 C -0.10 -1.88 9.54 -39.16 -0.37 -2.25 16 8 C -0.09 -1.87 5.87 -104.97 -0.62 -2.49 16 9 C 0.46 11.82 7.72 -12.38 -0.10 11.72 16 10 O -0.60 -17.13 15.92 5.28 0.08 -17.05 16 11 N -0.54 -14.25 5.23 -11.87 -0.06 -14.32 16 12 C -0.30 -8.30 9.68 -15.00 -0.15 -8.44 16 13 H 0.11 3.14 7.15 -52.48 -0.38 2.76 16 14 C 0.02 0.62 5.50 -17.45 -0.10 0.53 16 15 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 16 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.08 -1.44 9.60 -39.17 -0.38 -1.81 16 21 C -0.12 -1.80 7.88 -39.64 -0.31 -2.11 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 0.95 5.88 -51.93 -0.31 0.64 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 29 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.13 2.25 6.41 -52.49 -0.34 1.92 16 32 H 0.39 9.80 5.93 -40.82 -0.24 9.56 16 33 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.13 2.40 7.65 -52.49 -0.40 2.00 16 35 H 0.12 1.41 7.97 -52.49 -0.42 0.99 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -30.99 298.48 -7.43 -38.42 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.58 Total: 9.16 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.81 Total: -5.92 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.60 Total: -44.82 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.08 Total: -17.05 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.99 -7.43 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.700 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds