Wall clock time and date at job start Mon Mar 30 2020 18:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47144 * 2 1 4 4 C 1.46502 * 119.99770 * 269.99774 * 3 2 1 5 5 C 1.34769 * 120.00038 * 89.99761 * 3 2 1 6 6 O 1.21585 * 120.00276 * 0.02562 * 5 3 2 7 7 N 1.34775 * 120.00246 * 179.97438 * 5 3 2 8 8 C 1.39241 * 120.00634 * 184.27868 * 7 5 3 9 9 C 1.39484 * 119.83080 * 324.73067 * 8 7 5 10 10 C 1.36371 * 120.16900 * 180.24991 * 9 8 7 11 11 C 1.40872 * 119.82624 * 359.49977 * 10 9 8 12 12 C 1.41158 * 120.16235 * 180.22931 * 11 10 9 13 13 H 1.08003 * 120.00027 * 215.04999 * 12 11 10 14 14 C 1.39894 * 120.00332 * 35.05067 * 12 11 10 15 15 N 1.30884 * 119.99519 * 355.51675 * 14 12 11 16 16 Si 1.86797 * 120.00319 * 175.51268 * 14 12 11 17 17 H 1.48501 * 109.47008 * 90.00180 * 16 14 12 18 18 H 1.48499 * 109.47176 * 210.00402 * 16 14 12 19 19 H 1.48501 * 109.47117 * 330.00203 * 16 14 12 20 20 C 1.40868 * 119.67378 * 0.52078 * 11 10 9 21 21 C 1.36374 * 119.82768 * 359.73062 * 20 11 10 22 22 H 1.09002 * 109.46977 * 300.00222 * 1 2 3 23 23 H 1.08999 * 109.47062 * 60.00100 * 1 2 3 24 24 H 1.08995 * 109.47162 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47395 * 240.00116 * 2 1 3 26 26 H 1.08999 * 109.47062 * 119.99900 * 2 1 3 27 27 H 1.08999 * 109.47514 * 269.99833 * 4 3 2 28 28 H 1.09001 * 109.47261 * 30.00501 * 4 3 2 29 29 H 1.09004 * 109.46685 * 149.99694 * 4 3 2 30 30 H 0.97003 * 120.00205 * 4.28712 * 7 5 3 31 31 H 1.08004 * 119.91862 * 359.97422 * 9 8 7 32 32 H 1.07999 * 120.08849 * 179.73915 * 10 9 8 33 33 H 0.97008 * 119.99722 * 180.02562 * 15 14 12 34 34 H 1.07995 * 120.08821 * 179.71283 * 20 11 10 35 35 H 1.07999 * 119.91511 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2429 2.0166 1.1671 6 8 2.0407 1.4433 2.2201 7 7 2.6927 3.2871 1.1672 8 6 3.0095 3.9135 2.3696 9 6 2.2598 3.6395 3.5135 10 6 2.5608 4.2530 4.6936 11 6 3.6389 5.1575 4.7580 12 6 3.9598 5.7928 5.9769 13 1 4.3274 6.8084 5.9762 14 6 3.8017 5.1071 7.1860 15 7 3.2742 3.9093 7.1948 16 14 4.3435 5.9009 8.7878 17 1 3.2137 6.6732 9.3644 18 1 4.7625 4.8466 9.7459 19 1 5.4849 6.8142 8.5264 20 6 4.3912 5.4295 3.5985 21 6 4.0749 4.8122 2.4243 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.2920 1.9006 -1.5834 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 2.7956 3.7652 0.3295 31 1 1.4358 2.9430 3.4634 32 1 1.9768 4.0430 5.5774 33 1 3.1643 3.4340 8.0333 34 1 5.2161 6.1254 3.6392 35 1 4.6504 5.0200 1.5344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101741315.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:00 Heat of formation + Delta-G solvation = -20.316008 kcal Electronic energy + Delta-G solvation = -17660.915564 eV Core-core repulsion = 14851.210154 eV Total energy + Delta-G solvation = -2809.705410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.54598 -39.34085 -36.91427 -36.17191 -34.73301 -32.08066 -31.38523 -30.47050 -27.66232 -26.71911 -24.39137 -23.14346 -22.44170 -20.68984 -19.26733 -19.17489 -18.04265 -17.08866 -16.89927 -16.18619 -15.72438 -15.44607 -15.01508 -14.64157 -14.39430 -14.21213 -13.95086 -13.58651 -13.51155 -13.27980 -13.05724 -12.85283 -12.80384 -12.63453 -12.27251 -11.92886 -11.77470 -11.67504 -11.27535 -10.87729 -10.52712 -9.68177 -9.42993 -8.68137 -8.47285 -6.30510 0.87645 1.14936 1.39616 1.47864 1.55399 1.73934 2.19293 2.25905 2.84609 3.09917 3.71305 4.10680 4.25930 4.32012 4.44573 4.50471 4.54676 4.69231 4.81791 4.87569 4.95201 5.03987 5.13955 5.18271 5.30210 5.35348 5.44203 5.63050 5.71958 5.82951 6.06840 6.14821 6.18412 6.38780 6.73442 6.98354 7.04231 7.05447 7.65686 8.46018 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.043596 B = 0.004896 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.100309 B = 5718.012226 C = 6224.389027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 N -0.631 5.631 4 C 0.073 3.927 5 C 0.687 3.313 6 O -0.627 6.627 7 N -0.659 5.659 8 C 0.038 3.962 9 C -0.109 4.109 10 C -0.167 4.167 11 C 0.064 3.936 12 C -0.498 4.498 13 H 0.081 0.919 14 C 0.022 3.978 15 N -0.850 5.850 16 Si 0.992 3.008 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.254 1.254 20 C -0.207 4.207 21 C -0.109 4.109 22 H 0.023 0.977 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.413 0.587 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.281 0.719 34 H 0.115 0.885 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -3.238 -16.153 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.369 5.369 4 C -0.069 4.069 5 C 0.389 3.611 6 O -0.507 6.507 7 N -0.309 5.309 8 C -0.056 4.056 9 C -0.130 4.130 10 C -0.187 4.187 11 C 0.062 3.938 12 C -0.529 4.529 13 H 0.099 0.901 14 C -0.189 4.189 15 N -0.479 5.479 16 Si 0.812 3.188 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.178 1.178 20 C -0.227 4.227 21 C -0.130 4.130 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.133 0.867 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.252 0.748 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.992 -3.871 -15.329 15.935 hybrid contribution 0.045 0.234 0.744 0.782 sum -1.947 -3.637 -14.584 15.157 Atomic orbital electron populations 1.22098 0.95575 1.02936 1.01323 1.21448 0.94627 0.80437 1.03349 1.47211 1.69834 1.15235 1.04633 1.22018 1.03059 0.97522 0.84329 1.16286 0.78800 0.81565 0.84497 1.90897 1.60083 1.67657 1.32082 1.42044 1.68737 1.11804 1.08319 1.17182 0.99921 1.02495 0.85988 1.20661 0.99484 0.99379 0.93469 1.21164 0.99297 1.01984 0.96278 1.18054 0.90083 0.92191 0.93503 1.19767 1.40697 1.01089 0.91330 0.90134 1.26863 0.92820 0.94818 1.04427 1.69935 1.35537 1.12823 1.29570 0.85061 0.79527 0.78464 0.75715 1.18681 1.19841 1.17802 1.20951 1.02050 1.06191 0.93463 1.20405 0.95461 0.98771 0.98319 0.95791 0.90918 0.89832 0.86738 0.92854 0.91170 0.87974 0.90985 0.74778 0.88873 0.87888 0.90839 0.86729 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 71.98 0.74 -2.55 16 2 C 0.12 2.76 6.13 86.38 0.53 3.29 16 3 N -0.63 -16.27 2.87 -864.91 -2.49 -18.75 16 4 C 0.07 1.05 10.24 127.77 1.31 2.36 16 5 C 0.69 25.97 8.11 179.06 1.45 27.42 16 6 O -0.63 -30.77 13.34 -3.98 -0.05 -30.82 16 7 N -0.66 -23.57 5.18 -316.79 -1.64 -25.21 16 8 C 0.04 1.75 6.31 38.57 0.24 1.99 16 9 C -0.11 -5.91 8.61 22.13 0.19 -5.72 16 10 C -0.17 -9.75 8.61 22.48 0.19 -9.55 16 11 C 0.06 3.63 5.55 -21.27 -0.12 3.51 16 12 C -0.50 -27.91 9.02 23.39 0.21 -27.70 16 13 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 14 C 0.02 1.16 5.42 85.24 0.46 1.62 16 15 N -0.85 -48.78 10.61 21.82 0.23 -48.55 16 16 Si 0.99 40.62 29.56 68.60 2.03 42.65 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 20 C -0.21 -10.09 9.74 22.48 0.22 -9.87 16 21 C -0.11 -4.68 9.90 22.13 0.22 -4.46 16 22 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.11 1.59 8.07 -2.39 -0.02 1.57 16 26 H 0.05 1.53 7.42 -2.39 -0.02 1.51 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 29 H 0.07 0.96 6.30 -2.38 -0.02 0.95 16 30 H 0.41 10.78 6.51 -92.71 -0.60 10.18 16 31 H 0.09 5.23 6.22 -2.91 -0.02 5.21 16 32 H 0.10 6.44 6.15 -2.91 -0.02 6.42 16 33 H 0.28 14.80 8.30 -92.70 -0.77 14.03 16 34 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 35 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -75.04 294.34 4.22 -70.82 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.49 Total: 29.54 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 5.65 Total: -19.67 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -3.89 Total: -92.51 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -75.04 4.22 -70.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101741315.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.500 kcal (2) G-P(sol) polarization free energy of solvation -75.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds