Wall clock time and date at job start Mon Mar 30 2020 18:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38063 * 119.57494 * 2 1 4 4 C 1.38845 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38338 * 118.50695 * 0.25134 * 4 3 2 6 6 C 1.39102 * 119.09651 * 359.48210 * 5 4 3 7 7 N 1.39003 * 119.70417 * 180.27327 * 6 5 4 8 8 C 1.46500 * 120.00314 * 0.25316 * 7 6 5 9 9 C 1.52998 * 109.47379 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47266 * 300.00227 * 9 8 7 11 11 C 1.52996 * 109.46916 * 60.00114 * 9 8 7 12 12 C 1.53002 * 109.47132 * 180.02562 * 9 8 7 13 13 C 1.50702 * 109.47149 * 180.02562 * 12 9 8 14 14 H 1.08003 * 120.00043 * 359.97438 * 13 12 9 15 15 C 1.37874 * 120.00216 * 180.02562 * 13 12 9 16 16 N 1.31508 * 120.00345 * 180.02562 * 15 13 12 17 17 Si 1.86809 * 119.99830 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46916 * 89.99943 * 17 15 13 19 19 H 1.48496 * 109.47148 * 210.00402 * 17 15 13 20 20 H 1.48504 * 109.46805 * 330.00353 * 17 15 13 21 21 N 1.31948 * 119.57261 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47390 * 90.00120 * 1 2 3 23 23 H 1.09000 * 109.46998 * 210.00381 * 1 2 3 24 24 H 1.09005 * 109.47089 * 330.00212 * 1 2 3 25 25 H 1.08000 * 120.33564 * 359.97225 * 3 2 1 26 26 H 1.08002 * 120.74353 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.45228 * 179.72755 * 5 4 3 28 28 H 0.97006 * 120.00266 * 180.25403 * 7 6 5 29 29 H 1.09004 * 109.46931 * 300.00213 * 8 7 6 30 30 H 1.09001 * 109.46680 * 59.99915 * 8 7 6 31 31 H 1.09003 * 109.47022 * 59.99723 * 10 9 8 32 32 H 1.08997 * 109.47199 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47065 * 300.00192 * 10 9 8 34 34 H 1.08999 * 109.47579 * 60.00462 * 11 9 8 35 35 H 1.09004 * 109.47356 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47274 * 299.99901 * 11 9 8 37 37 H 1.09004 * 109.46949 * 300.00133 * 12 9 8 38 38 H 1.09001 * 109.46908 * 59.99986 * 12 9 8 39 39 H 0.96999 * 120.00520 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0064 6 6 3.4815 -1.1950 -0.0005 7 7 4.1267 -2.4263 -0.0005 8 6 5.5904 -2.4863 -0.0011 9 6 6.0409 -3.9485 -0.0004 10 6 5.5023 -4.6475 1.2495 11 6 5.5013 -4.6490 -1.2489 12 6 7.5697 -4.0111 -0.0003 13 6 8.0134 -5.4513 -0.0002 14 1 7.2786 -6.2428 0.0002 15 6 9.3575 -5.7586 0.0004 16 7 9.7447 -7.0154 -0.0001 17 14 10.6285 -4.3896 0.0003 18 1 10.9648 -4.0264 1.4004 19 1 11.8541 -4.8521 -0.6992 20 1 10.0769 -3.2021 -0.7003 21 7 2.1582 -1.1476 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6469 2.1352 -0.0005 26 1 4.1329 2.1206 -0.0010 27 1 5.3110 -0.0650 -0.0114 28 1 3.6077 -3.2458 -0.0002 29 1 5.9741 -1.9879 -0.8914 30 1 5.9748 -1.9876 0.8886 31 1 4.4132 -4.6028 1.2499 32 1 5.8236 -5.6890 1.2503 33 1 5.8867 -4.1484 2.1390 34 1 5.8850 -4.1511 -2.1394 35 1 5.8226 -5.6906 -1.2487 36 1 4.4123 -4.6044 -1.2485 37 1 7.9537 -3.5130 -0.8906 38 1 7.9537 -3.5122 0.8894 39 1 10.6903 -7.2316 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124526444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:59 Heat of formation + Delta-G solvation = 17.855480 kcal Electronic energy + Delta-G solvation = -17809.803650 eV Core-core repulsion = 15137.586575 eV Total energy + Delta-G solvation = -2672.217075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18291 -37.85171 -34.70896 -32.65886 -32.35485 -30.79141 -27.87801 -27.02001 -26.54562 -26.07752 -22.86600 -22.54266 -21.13748 -18.35116 -17.22387 -16.81117 -16.39211 -15.52416 -14.88275 -14.54151 -14.11016 -14.05898 -13.93945 -13.24587 -12.99611 -12.91661 -12.75185 -12.30698 -12.28339 -12.24120 -11.73578 -11.30200 -11.14483 -11.01702 -10.64443 -10.51272 -10.17207 -9.92217 -9.78563 -9.56035 -9.41553 -9.34360 -9.02041 -8.56252 -7.50624 -6.06258 -4.03783 1.34941 1.56562 3.28152 3.34754 3.36782 3.38495 3.97754 4.42518 4.56477 4.80467 5.14711 5.24134 5.25705 5.30971 5.37909 5.45612 5.49920 5.59544 5.60766 5.66415 5.97093 5.99147 6.07842 6.10549 6.19777 6.32774 6.36940 6.52915 6.59612 6.68189 6.88007 7.00797 7.03461 7.15498 7.22677 7.32476 7.73876 7.81256 8.33595 8.51113 8.98182 9.55905 11.06591 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041464 B = 0.004482 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.120527 B = 6245.777120 C = 6719.230142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.174 3.826 3 C -0.248 4.248 4 C -0.032 4.032 5 C -0.249 4.249 6 C 0.412 3.588 7 N -0.714 5.714 8 C 0.132 3.868 9 C -0.061 4.061 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.001 4.001 13 C -0.512 4.512 14 H 0.078 0.922 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 N -0.551 5.551 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.404 0.596 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 14.927 -0.040 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.035 3.965 3 C -0.271 4.271 4 C -0.057 4.057 5 C -0.274 4.274 6 C 0.175 3.825 7 N -0.345 5.345 8 C 0.008 3.992 9 C -0.061 4.061 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.039 4.039 13 C -0.549 4.549 14 H 0.096 0.904 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 N -0.271 5.271 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.242 0.758 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.892 14.018 -0.041 19.735 hybrid contribution 1.252 1.141 0.012 1.694 sum -12.640 15.159 -0.029 19.737 Atomic orbital electron populations 1.20702 0.89335 1.03136 1.02836 1.20856 0.96169 0.87640 0.91852 1.21506 0.94778 0.98621 1.12199 1.21255 0.94216 0.97414 0.92847 1.21417 1.00959 0.92011 1.13023 1.18413 0.87992 0.86746 0.89307 1.44839 1.06539 1.04490 1.78621 1.21700 0.77707 0.99064 1.00701 1.20658 0.98633 0.90863 0.95967 1.21773 0.97842 1.02425 0.96601 1.21765 0.97829 1.02415 0.96605 1.19593 0.89348 0.98555 0.96387 1.21078 0.92647 0.90771 1.50448 0.90377 1.25004 0.98544 0.95148 0.94746 1.69897 1.15969 1.17117 1.51245 0.86851 0.81312 0.83074 0.78456 1.20378 1.21479 1.19074 1.66973 1.07825 1.30120 1.22167 0.90589 0.90686 0.90879 0.85705 0.85406 0.85171 0.75849 0.92264 0.92276 0.94779 0.90887 0.93482 0.93477 0.90888 0.94776 0.96414 0.96860 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.00 0.37 -0.56 16 2 C 0.17 2.20 6.78 -82.61 -0.56 1.64 16 3 C -0.25 -2.80 9.73 -39.42 -0.38 -3.19 16 4 C -0.03 -0.37 10.17 -39.32 -0.40 -0.77 16 5 C -0.25 -3.39 9.33 -39.22 -0.37 -3.76 16 6 C 0.41 6.28 7.65 -155.01 -1.19 5.10 16 7 N -0.71 -10.79 5.13 -60.42 -0.31 -11.10 16 8 C 0.13 2.08 3.78 -4.04 -0.02 2.07 16 9 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 10 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 11 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 12 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 13 C -0.51 -13.62 8.20 -34.44 -0.28 -13.90 16 14 H 0.08 2.22 5.92 -52.48 -0.31 1.91 16 15 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 16 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 17 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 21 N -0.55 -8.37 10.30 -8.67 -0.09 -8.46 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.13 1.67 6.71 -52.49 -0.35 1.31 16 28 H 0.40 6.09 6.29 -40.82 -0.26 5.84 16 29 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 30 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 32 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 36 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 37 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 38 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -29.74 310.20 -8.15 -37.89 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.03 Total: 3.79 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.50 Total: -16.91 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.37 Total: -45.90 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.74 -8.15 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124526444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.741 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds