Wall clock time and date at job start Mon Mar 30 2020 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38063 * 119.57494 * 2 1 4 4 C 1.38845 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38338 * 118.50695 * 0.25134 * 4 3 2 6 6 C 1.39102 * 119.09651 * 359.48210 * 5 4 3 7 7 N 1.39003 * 119.70417 * 180.27327 * 6 5 4 8 8 C 1.46500 * 120.00314 * 0.25316 * 7 6 5 9 9 C 1.52998 * 109.47379 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47266 * 300.00227 * 9 8 7 11 11 C 1.52996 * 109.46916 * 60.00114 * 9 8 7 12 12 C 1.53002 * 109.47132 * 180.02562 * 9 8 7 13 13 C 1.50702 * 109.47149 * 180.02562 * 12 9 8 14 14 H 1.08003 * 120.00043 * 359.97438 * 13 12 9 15 15 C 1.37874 * 120.00216 * 180.02562 * 13 12 9 16 16 N 1.31508 * 120.00345 * 180.02562 * 15 13 12 17 17 Si 1.86809 * 119.99830 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46916 * 89.99943 * 17 15 13 19 19 H 1.48496 * 109.47148 * 210.00402 * 17 15 13 20 20 H 1.48504 * 109.46805 * 330.00353 * 17 15 13 21 21 N 1.31948 * 119.57261 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47390 * 90.00120 * 1 2 3 23 23 H 1.09000 * 109.46998 * 210.00381 * 1 2 3 24 24 H 1.09005 * 109.47089 * 330.00212 * 1 2 3 25 25 H 1.08000 * 120.33564 * 359.97225 * 3 2 1 26 26 H 1.08002 * 120.74353 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.45228 * 179.72755 * 5 4 3 28 28 H 0.97006 * 120.00266 * 180.25403 * 7 6 5 29 29 H 1.09004 * 109.46931 * 300.00213 * 8 7 6 30 30 H 1.09001 * 109.46680 * 59.99915 * 8 7 6 31 31 H 1.09003 * 109.47022 * 59.99723 * 10 9 8 32 32 H 1.08997 * 109.47199 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47065 * 300.00192 * 10 9 8 34 34 H 1.08999 * 109.47579 * 60.00462 * 11 9 8 35 35 H 1.09004 * 109.47356 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47274 * 299.99901 * 11 9 8 37 37 H 1.09004 * 109.46949 * 300.00133 * 12 9 8 38 38 H 1.09001 * 109.46908 * 59.99986 * 12 9 8 39 39 H 0.96999 * 120.00520 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0064 6 6 3.4815 -1.1950 -0.0005 7 7 4.1267 -2.4263 -0.0005 8 6 5.5904 -2.4863 -0.0011 9 6 6.0409 -3.9485 -0.0004 10 6 5.5023 -4.6475 1.2495 11 6 5.5013 -4.6490 -1.2489 12 6 7.5697 -4.0111 -0.0003 13 6 8.0134 -5.4513 -0.0002 14 1 7.2786 -6.2428 0.0002 15 6 9.3575 -5.7586 0.0004 16 7 9.7447 -7.0154 -0.0001 17 14 10.6285 -4.3896 0.0003 18 1 10.9648 -4.0264 1.4004 19 1 11.8541 -4.8521 -0.6992 20 1 10.0769 -3.2021 -0.7003 21 7 2.1582 -1.1476 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6469 2.1352 -0.0005 26 1 4.1329 2.1206 -0.0010 27 1 5.3110 -0.0650 -0.0114 28 1 3.6077 -3.2458 -0.0002 29 1 5.9741 -1.9879 -0.8914 30 1 5.9748 -1.9876 0.8886 31 1 4.4132 -4.6028 1.2499 32 1 5.8236 -5.6890 1.2503 33 1 5.8867 -4.1484 2.1390 34 1 5.8850 -4.1511 -2.1394 35 1 5.8226 -5.6906 -1.2487 36 1 4.4123 -4.6044 -1.2485 37 1 7.9537 -3.5130 -0.8906 38 1 7.9537 -3.5122 0.8894 39 1 10.6903 -7.2316 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124526444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:16:57 Heat of formation + Delta-G solvation = 0.753238 kcal Electronic energy + Delta-G solvation = -17810.545259 eV Core-core repulsion = 15137.586575 eV Total energy + Delta-G solvation = -2672.958684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.16729 -39.23638 -35.99332 -34.33178 -33.53744 -31.89080 -29.65306 -28.03626 -27.93346 -27.38284 -24.51155 -23.55754 -22.28918 -19.76493 -18.90792 -18.32607 -17.39123 -16.51716 -16.20696 -16.03678 -15.46655 -15.33121 -15.26287 -14.61740 -14.27011 -14.20350 -14.08208 -13.75036 -13.38269 -12.99281 -12.91733 -12.83983 -12.65619 -12.60896 -12.31025 -12.14674 -11.75622 -11.56642 -11.20965 -11.03492 -10.92758 -10.70268 -10.41216 -10.31312 -8.54451 -8.21676 -6.22941 0.41532 0.62656 1.38051 1.39935 1.50301 2.25292 2.40210 3.02033 3.13734 3.67653 3.89216 4.00446 4.04039 4.13700 4.25975 4.42473 4.51881 4.63630 4.68971 4.70087 4.78620 4.84999 4.87326 4.92004 5.00510 5.05495 5.23512 5.27057 5.29849 5.35956 5.38452 5.46690 5.52009 5.65048 5.73318 5.80318 6.15800 6.38926 6.69283 6.84445 7.33238 7.39819 8.94374 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041464 B = 0.004482 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.120527 B = 6245.777120 C = 6719.230142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.154 3.846 3 C -0.243 4.243 4 C -0.032 4.032 5 C -0.264 4.264 6 C 0.390 3.610 7 N -0.718 5.718 8 C 0.148 3.852 9 C -0.057 4.057 10 C -0.123 4.123 11 C -0.122 4.122 12 C 0.000 4.000 13 C -0.506 4.506 14 H 0.045 0.955 15 C 0.002 3.998 16 N -0.955 5.955 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.291 1.291 20 H -0.244 1.244 21 N -0.578 5.578 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.135 0.865 28 H 0.402 0.598 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 18.491 -0.042 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.016 3.984 3 C -0.265 4.265 4 C -0.057 4.057 5 C -0.289 4.289 6 C 0.154 3.846 7 N -0.350 5.350 8 C 0.024 3.976 9 C -0.058 4.058 10 C -0.180 4.180 11 C -0.180 4.180 12 C -0.038 4.038 13 C -0.544 4.544 14 H 0.063 0.937 15 C -0.194 4.194 16 N -0.596 5.596 17 Si 0.765 3.235 18 H -0.196 1.196 19 H -0.217 1.217 20 H -0.168 1.168 21 N -0.298 5.298 22 H 0.104 0.896 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.174 0.826 26 H 0.176 0.824 27 H 0.153 0.847 28 H 0.238 0.762 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.938 17.618 -0.044 23.099 hybrid contribution 1.417 0.044 0.013 1.418 sum -13.521 17.662 -0.031 22.243 Atomic orbital electron populations 1.20783 0.87130 1.04051 1.03735 1.21515 0.97821 0.87587 0.91480 1.21919 0.94937 0.99426 1.10221 1.21675 0.94713 0.97888 0.91453 1.21606 1.01319 0.92364 1.13632 1.18615 0.88447 0.86968 0.90573 1.44665 1.05923 1.04705 1.79737 1.21400 0.78421 0.96563 1.01260 1.20531 0.96094 0.93065 0.96089 1.21680 0.99290 1.00396 0.96634 1.21673 0.99278 1.00391 0.96635 1.19544 0.92262 0.95394 0.96576 1.21391 0.92000 0.92520 1.48528 0.93701 1.25917 1.01089 0.97488 0.94904 1.70059 1.16357 1.19591 1.53638 0.85807 0.78292 0.80512 0.78924 1.19573 1.21718 1.16776 1.66971 1.08051 1.31737 1.23039 0.89584 0.91440 0.88312 0.82558 0.82379 0.84729 0.76187 0.91755 0.91710 0.92544 0.93938 0.93271 0.93297 0.93931 0.92538 0.96073 0.96227 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.17 71.23 0.72 -0.82 16 2 C 0.15 3.53 6.78 42.50 0.29 3.82 16 3 C -0.24 -4.62 9.73 22.37 0.22 -4.41 16 4 C -0.03 -0.63 10.17 22.44 0.23 -0.40 16 5 C -0.26 -6.60 9.33 22.50 0.21 -6.39 16 6 C 0.39 11.27 7.65 133.05 1.02 12.29 16 7 N -0.72 -20.73 5.13 -345.08 -1.77 -22.51 16 8 C 0.15 4.40 3.78 86.38 0.33 4.73 16 9 C -0.06 -2.06 0.54 -52.18 -0.03 -2.08 16 10 C -0.12 -4.38 8.05 71.98 0.58 -3.80 16 11 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 12 C 0.00 0.00 3.11 29.85 0.09 0.10 16 13 C -0.51 -27.58 8.20 25.60 0.21 -27.37 16 14 H 0.04 2.69 5.92 -2.91 -0.02 2.67 16 15 C 0.00 0.11 5.47 84.65 0.46 0.57 16 16 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 17 Si 0.94 43.39 27.47 68.60 1.88 45.27 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 21 N -0.58 -16.71 10.30 -181.34 -1.87 -18.58 16 22 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 0.99 8.08 -2.38 -0.02 0.97 16 25 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 26 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.13 3.13 6.71 -2.91 -0.02 3.11 16 28 H 0.40 11.68 6.29 -92.70 -0.58 11.09 16 29 H 0.06 1.85 7.92 -2.39 -0.02 1.84 16 30 H 0.06 1.86 7.94 -2.39 -0.02 1.84 16 31 H 0.06 1.74 6.86 -2.39 -0.02 1.72 16 32 H 0.04 1.75 6.62 -2.39 -0.02 1.74 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 36 H 0.06 1.74 6.86 -2.39 -0.02 1.72 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 38 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.63 310.20 3.85 -61.78 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.39 Total: 20.54 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.91 Total: -27.57 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.34 Total: -100.02 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -65.63 3.85 -61.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124526444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.538 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds