Wall clock time and date at job start Mon Mar 30 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00570 * 2 1 4 4 C 1.50697 * 109.47017 * 269.99970 * 3 2 1 5 5 H 1.08001 * 120.00287 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00131 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00104 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99693 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47015 * 89.99777 * 8 6 4 10 10 H 1.48506 * 109.46787 * 209.99445 * 8 6 4 11 11 H 1.48491 * 109.47379 * 329.99338 * 8 6 4 12 12 C 1.34786 * 119.99466 * 180.02562 * 2 1 3 13 13 O 1.21587 * 119.99823 * 180.02562 * 12 2 1 14 14 N 1.34773 * 119.99988 * 359.97438 * 12 2 1 15 15 C 1.46497 * 119.99546 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.47012 * 180.02562 * 15 14 12 17 17 C 1.38238 * 119.99792 * 90.00154 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.98090 * 16 15 14 22 22 H 1.09001 * 109.46606 * 270.00415 * 1 2 3 23 23 H 1.09002 * 109.46738 * 30.00155 * 1 2 3 24 24 H 1.08999 * 109.47506 * 149.99954 * 1 2 3 25 25 H 1.09005 * 109.46942 * 29.99788 * 3 2 1 26 26 H 1.09004 * 109.47361 * 150.00004 * 3 2 1 27 27 H 0.97003 * 120.00036 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00430 * 0.02562 * 14 12 2 29 29 H 1.09005 * 109.47643 * 60.00506 * 15 14 12 30 30 H 1.09000 * 109.47513 * 299.99670 * 15 14 12 31 31 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 35 35 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1263 2.8778 -1.6728 7 7 3.3459 3.2571 -2.9127 8 14 3.7333 3.9289 -0.2530 9 1 5.1068 3.5077 0.1229 10 1 3.7483 5.3557 -0.6646 11 1 2.8274 3.7592 0.9113 12 6 2.1388 -1.1673 -0.0005 13 8 3.3547 -1.1674 -0.0001 14 7 1.4648 -2.3344 -0.0005 15 6 2.1973 -3.6032 -0.0005 16 6 1.2179 -4.7486 -0.0012 17 6 0.7693 -5.2737 -1.1986 18 6 -0.1286 -6.3247 -1.1992 19 6 -0.5774 -6.8510 -0.0024 20 6 -0.1329 -6.3225 1.1951 21 6 0.7686 -5.2745 1.1957 22 1 -0.3632 0.0001 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6086 2.0284 0.5138 26 1 3.1501 1.1383 0.5138 27 1 3.8228 4.0830 -3.0900 28 1 0.4949 -2.3344 -0.0005 29 1 2.8240 -3.6610 0.8895 30 1 2.8240 -3.6610 -0.8905 31 1 1.1203 -4.8627 -2.1338 32 1 -0.4795 -6.7346 -2.1348 33 1 -1.2787 -7.6724 -0.0029 34 1 -0.4869 -6.7308 2.1301 35 1 1.1197 -4.8648 2.1312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139556963.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:16 Heat of formation + Delta-G solvation = -19.604297 kcal Electronic energy + Delta-G solvation = -17347.295021 eV Core-core repulsion = 14537.620474 eV Total energy + Delta-G solvation = -2809.674548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = -0.16 seconds Orbital eigenvalues (eV) -41.15623 -40.01903 -36.76628 -35.94351 -34.64024 -32.33327 -31.79096 -30.24995 -27.65584 -26.74298 -24.20233 -23.46089 -22.21611 -20.99338 -19.12549 -19.05047 -17.72070 -17.29929 -16.76606 -16.29715 -15.99909 -15.86290 -15.30367 -14.96175 -14.47929 -14.34341 -14.17548 -13.83404 -13.64190 -13.48848 -13.44141 -13.20009 -12.80355 -12.40570 -12.01911 -11.97604 -11.90734 -11.73200 -11.18534 -10.81018 -10.18574 -9.82517 -9.77441 -9.28227 -8.32131 -6.37173 0.30115 0.49823 1.34714 1.39781 1.48083 1.89430 2.28101 2.33521 2.86602 3.02308 3.26464 3.67800 3.94293 4.16274 4.30548 4.30974 4.38546 4.57290 4.61575 4.66679 4.78397 4.79498 4.90283 4.94291 5.06192 5.16852 5.47028 5.50512 5.54471 5.60509 5.61960 5.68018 6.04934 6.09508 6.30511 6.63729 7.12025 7.24831 7.69181 8.85193 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.046213 B = 0.004316 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.742880 B = 6486.103251 C = 6573.728249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.623 5.623 3 C 0.240 3.760 4 C -0.538 4.538 5 H 0.025 0.975 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.235 1.235 12 C 0.694 3.306 13 O -0.641 6.641 14 N -0.730 5.730 15 C 0.182 3.818 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.107 4.107 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.268 0.732 28 H 0.407 0.593 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -18.861 9.886 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.358 5.358 3 C 0.117 3.883 4 C -0.576 4.576 5 H 0.043 0.957 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.158 1.158 12 C 0.395 3.605 13 O -0.522 6.522 14 N -0.389 5.389 15 C 0.058 3.942 16 C -0.113 4.113 17 C -0.133 4.133 18 C -0.144 4.144 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.126 4.126 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.245 0.755 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.213 -18.707 9.788 23.906 hybrid contribution 0.326 0.762 -0.295 0.880 sum -10.887 -17.945 9.493 23.036 Atomic orbital electron populations 1.21850 0.77981 1.03547 1.02704 1.47080 1.07782 1.04677 1.76300 1.19248 0.92522 0.81335 0.95153 1.21619 1.36827 1.06641 0.92547 0.95686 1.25888 0.95240 0.98965 0.98780 1.70059 1.42800 1.24531 1.21392 0.85665 0.79581 0.77596 0.79774 1.20246 1.19937 1.15839 1.16155 0.84968 0.81405 0.77969 1.90835 1.14163 1.87014 1.60234 1.45109 1.10026 1.03254 1.80472 1.19952 0.92669 0.79718 1.01859 1.19761 0.99483 0.97443 0.94618 1.21268 0.97578 0.96993 0.97439 1.21436 0.97179 0.96211 0.99623 1.21575 0.99504 1.00004 0.92108 1.21474 0.97059 0.96171 0.99491 1.21279 0.97209 0.96751 0.97335 0.90311 0.91053 0.90488 0.92725 0.96290 0.92277 0.75525 0.91499 0.92836 0.86248 0.84055 0.83400 0.83526 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.20 127.77 1.30 3.73 16 2 N -0.62 -26.64 2.86 -869.29 -2.48 -29.13 16 3 C 0.24 12.10 4.23 85.63 0.36 12.46 16 4 C -0.54 -32.63 9.94 25.60 0.25 -32.38 16 5 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 6 C 0.01 0.54 5.47 84.66 0.46 1.00 16 7 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 8 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.24 -9.95 6.54 99.48 0.65 -9.29 16 12 C 0.69 30.50 8.28 179.05 1.48 31.98 16 13 O -0.64 -34.73 15.92 -3.99 -0.06 -34.80 16 14 N -0.73 -23.39 5.41 -482.28 -2.61 -26.00 16 15 C 0.18 5.23 5.80 85.64 0.50 5.73 16 16 C -0.11 -2.48 5.25 -19.86 -0.10 -2.58 16 17 C -0.11 -2.33 9.70 22.27 0.22 -2.11 16 18 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 19 C -0.11 -1.53 10.05 22.27 0.22 -1.31 16 20 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 21 C -0.11 -1.95 9.70 22.27 0.22 -1.74 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 24 H 0.08 1.89 6.36 -2.39 -0.02 1.88 16 25 H 0.05 2.48 7.13 -2.38 -0.02 2.46 16 26 H 0.02 1.03 6.85 -2.38 -0.02 1.01 16 27 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 28 H 0.41 10.48 6.19 -92.71 -0.57 9.91 16 29 H 0.07 1.97 8.09 -2.38 -0.02 1.95 16 30 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -80.08 300.66 2.84 -77.24 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.45 Total: 14.99 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.36 Total: 11.45 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -4.80 Total: -115.94 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.06 Total: -34.80 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -80.08 2.84 -77.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139556963.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.633 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.16 seconds