Wall clock time and date at job start Mon Mar 30 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48501 * 109.47123 * 269.99953 * 3 2 1 5 5 H 1.48504 * 109.47323 * 29.99816 * 3 2 1 6 6 H 1.48500 * 109.47236 * 149.99422 * 3 2 1 7 7 C 1.37883 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47103 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46758 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46972 * 179.97438 * 11 10 9 13 13 C 1.47897 * 110.99555 * 69.87474 * 12 11 10 14 14 C 1.54000 * 107.05672 * 145.84575 * 13 12 11 15 15 C 1.54598 * 105.22213 * 358.72428 * 14 13 12 16 16 C 1.48533 * 111.00245 * 187.27424 * 12 11 10 17 17 H 1.09003 * 110.66452 * 318.71648 * 16 12 11 18 18 C 1.50697 * 110.66703 * 81.67494 * 16 12 11 19 19 C 1.34851 * 125.89225 * 209.99869 * 18 16 12 20 20 C 1.40888 * 107.41731 * 180.02562 * 19 18 16 21 21 C 1.34849 * 107.41932 * 0.02562 * 20 19 18 22 22 N 1.36341 * 108.21753 * 359.73625 * 21 20 19 23 23 H 0.97000 * 125.63711 * 180.27245 * 22 21 20 24 24 H 0.96998 * 119.99636 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46704 * 60.00476 * 9 7 2 26 26 H 1.08996 * 109.47390 * 300.00680 * 9 7 2 27 27 H 1.09004 * 109.47037 * 60.00576 * 10 9 7 28 28 H 1.08991 * 109.47132 * 300.00218 * 10 9 7 29 29 H 1.09004 * 109.46873 * 60.00480 * 11 10 9 30 30 H 1.08991 * 109.47481 * 300.00009 * 11 10 9 31 31 H 1.09000 * 109.91881 * 26.49521 * 13 12 11 32 32 H 1.08997 * 109.91908 * 265.19336 * 13 12 11 33 33 H 1.09002 * 110.31026 * 117.69182 * 14 13 12 34 34 H 1.09000 * 110.30915 * 239.76211 * 14 13 12 35 35 H 1.09003 * 110.72246 * 96.45403 * 15 14 13 36 36 H 1.09003 * 110.72391 * 219.72762 * 15 14 13 37 37 H 1.07998 * 126.29008 * 359.97438 * 19 18 16 38 38 H 1.08004 * 126.28584 * 180.02562 * 20 19 18 39 39 H 1.08001 * 125.88769 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0046 12 7 2.4346 -6.1038 0.0050 13 6 3.1410 -6.1966 1.3010 14 6 3.3917 -7.6916 1.5728 15 6 2.7580 -8.4339 0.3738 16 6 1.7349 -7.4024 -0.1689 17 1 0.8173 -7.4266 0.4191 18 6 1.4386 -7.6562 -1.6244 19 6 0.3954 -8.3611 -2.1077 20 6 0.4958 -8.3530 -3.5129 21 6 1.5967 -7.6440 -3.8350 22 7 2.1765 -7.2091 -2.6802 23 1 2.9820 -6.6720 -2.6196 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8718 -3.6037 0.8928 28 1 2.8718 -3.6052 -0.8872 29 1 0.8532 -5.0458 -0.8852 30 1 0.8537 -5.0438 0.8947 31 1 2.5220 -5.7741 2.0924 32 1 4.0910 -5.6651 1.2451 33 1 4.4618 -7.8933 1.6199 34 1 2.9091 -7.9932 2.5024 35 1 3.5113 -8.6628 -0.3800 36 1 2.2540 -9.3419 0.7050 37 1 -0.3748 -8.8438 -1.5245 38 1 -0.1842 -8.8276 -4.2050 39 1 1.9545 -7.4499 -4.8353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169975434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:46 Heat of formation + Delta-G solvation = 30.444195 kcal Electronic energy + Delta-G solvation = -17929.238850 eV Core-core repulsion = 15257.567663 eV Total energy + Delta-G solvation = -2671.671188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01185 -38.65196 -34.38052 -32.45548 -30.71238 -30.67568 -30.01145 -26.83175 -26.11252 -23.08358 -21.55900 -21.10907 -20.17529 -19.87882 -19.54909 -17.46984 -16.39194 -15.70142 -15.04820 -14.44369 -14.26034 -14.04731 -13.95313 -13.34386 -13.04330 -12.79810 -12.48030 -12.29138 -12.08558 -12.02355 -11.45008 -11.39846 -11.16837 -11.06312 -10.80299 -10.64398 -10.51090 -10.47919 -9.65721 -9.33361 -9.05802 -8.65880 -8.34052 -8.30799 -7.84874 -5.98798 -4.01088 2.45138 3.15380 3.32246 3.38295 3.41656 3.57385 4.09939 4.46981 4.67740 4.72142 4.96778 5.20761 5.30287 5.35957 5.36886 5.50739 5.62682 5.66766 5.77665 5.78206 5.80231 5.88183 5.98500 6.08299 6.18435 6.31204 6.39234 6.42530 6.65378 6.74728 6.99388 7.12027 7.23593 7.29498 7.41381 7.69061 7.83049 7.83977 8.01494 8.44468 9.06068 9.62815 11.12678 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.004867 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.262322 B = 5751.215461 C = 6480.336371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.048 3.952 12 N -0.519 5.519 13 C 0.038 3.962 14 C -0.132 4.132 15 C -0.111 4.111 16 C 0.126 3.874 17 H 0.071 0.929 18 C 0.045 3.955 19 C -0.206 4.206 20 C -0.204 4.204 21 C -0.020 4.020 22 N -0.537 5.537 23 H 0.419 0.581 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -18.184 -1.469 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.079 4.079 12 N -0.244 5.244 13 C -0.090 4.090 14 C -0.170 4.170 15 C -0.150 4.150 16 C 0.017 3.983 17 H 0.089 0.911 18 C -0.070 4.070 19 C -0.231 4.231 20 C -0.229 4.229 21 C -0.152 4.152 22 N -0.130 5.130 23 H 0.256 0.744 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.057 -17.857 -1.876 18.654 hybrid contribution 0.057 1.177 0.594 1.320 sum 5.113 -16.680 -1.283 17.493 Atomic orbital electron populations 1.69971 1.06063 1.26555 1.50948 1.25031 0.94838 0.99242 0.95379 0.86601 0.79834 0.83509 0.78100 1.20666 1.21225 1.19899 1.21237 0.92983 0.91043 1.50426 0.92749 1.19069 0.94021 0.91398 0.97082 1.21587 0.99044 0.92679 1.00561 1.22476 0.93771 0.91116 1.00536 1.64695 1.26316 1.01969 1.31376 1.22830 0.99822 0.95821 0.90553 1.22442 1.01296 0.95107 0.98163 1.22510 0.97864 0.97232 0.97352 1.21263 0.96719 0.90462 0.89829 0.91137 1.19935 0.95261 1.03107 0.88669 1.20592 1.00359 1.07482 0.94676 1.20788 0.99976 1.06834 0.95331 1.21795 0.98194 1.04749 0.90439 1.41882 1.24011 1.41937 1.05206 0.74399 0.93026 0.96672 0.96840 0.93554 0.92935 0.91197 0.94906 0.93278 0.90190 0.91122 0.91527 0.91020 0.90909 0.85305 0.85185 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.12 5.21 -26.73 -0.14 -2.26 16 11 C 0.05 0.86 4.70 -3.82 -0.02 0.85 16 12 N -0.52 -7.59 4.86 -223.89 -1.09 -8.68 16 13 C 0.04 0.49 5.79 -2.75 -0.02 0.48 16 14 C -0.13 -1.36 6.92 -25.37 -0.18 -1.53 16 15 C -0.11 -1.19 6.51 -24.79 -0.16 -1.35 16 16 C 0.13 1.64 2.76 -66.86 -0.18 1.46 16 17 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 18 C 0.05 0.62 5.77 -81.79 -0.47 0.15 16 19 C -0.21 -2.80 10.76 -39.78 -0.43 -3.23 16 20 C -0.20 -2.63 10.86 -39.78 -0.43 -3.07 16 21 C -0.02 -0.24 11.94 -16.75 -0.20 -0.44 16 22 N -0.54 -6.99 5.98 -9.12 -0.05 -7.05 16 23 H 0.42 5.12 8.94 -40.82 -0.37 4.75 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.96 7.52 -51.93 -0.39 0.57 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.33 7.82 -51.93 -0.41 0.92 16 30 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 31 H 0.05 0.68 7.57 -51.93 -0.39 0.29 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 39 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -31.01 318.70 -9.96 -40.98 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.56 Total: 1.91 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.78 Total: -22.22 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.41 Total: -42.36 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.01 -9.96 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169975434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.420 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds