Wall clock time and date at job start Mon Mar 30 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48501 * 109.47123 * 269.99953 * 3 2 1 5 5 H 1.48504 * 109.47323 * 29.99816 * 3 2 1 6 6 H 1.48500 * 109.47236 * 149.99422 * 3 2 1 7 7 C 1.37883 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47103 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46758 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46972 * 179.97438 * 11 10 9 13 13 C 1.47897 * 110.99555 * 69.87474 * 12 11 10 14 14 C 1.54000 * 107.05672 * 145.84575 * 13 12 11 15 15 C 1.54598 * 105.22213 * 358.72428 * 14 13 12 16 16 C 1.48533 * 111.00245 * 187.27424 * 12 11 10 17 17 H 1.09003 * 110.66452 * 318.71648 * 16 12 11 18 18 C 1.50697 * 110.66703 * 81.67494 * 16 12 11 19 19 C 1.34851 * 125.89225 * 209.99869 * 18 16 12 20 20 C 1.40888 * 107.41731 * 180.02562 * 19 18 16 21 21 C 1.34849 * 107.41932 * 0.02562 * 20 19 18 22 22 N 1.36341 * 108.21753 * 359.73625 * 21 20 19 23 23 H 0.97000 * 125.63711 * 180.27245 * 22 21 20 24 24 H 0.96998 * 119.99636 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46704 * 60.00476 * 9 7 2 26 26 H 1.08996 * 109.47390 * 300.00680 * 9 7 2 27 27 H 1.09004 * 109.47037 * 60.00576 * 10 9 7 28 28 H 1.08991 * 109.47132 * 300.00218 * 10 9 7 29 29 H 1.09004 * 109.46873 * 60.00480 * 11 10 9 30 30 H 1.08991 * 109.47481 * 300.00009 * 11 10 9 31 31 H 1.09000 * 109.91881 * 26.49521 * 13 12 11 32 32 H 1.08997 * 109.91908 * 265.19336 * 13 12 11 33 33 H 1.09002 * 110.31026 * 117.69182 * 14 13 12 34 34 H 1.09000 * 110.30915 * 239.76211 * 14 13 12 35 35 H 1.09003 * 110.72246 * 96.45403 * 15 14 13 36 36 H 1.09003 * 110.72391 * 219.72762 * 15 14 13 37 37 H 1.07998 * 126.29008 * 359.97438 * 19 18 16 38 38 H 1.08004 * 126.28584 * 180.02562 * 20 19 18 39 39 H 1.08001 * 125.88769 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0046 12 7 2.4346 -6.1038 0.0050 13 6 3.1410 -6.1966 1.3010 14 6 3.3917 -7.6916 1.5728 15 6 2.7580 -8.4339 0.3738 16 6 1.7349 -7.4024 -0.1689 17 1 0.8173 -7.4266 0.4191 18 6 1.4386 -7.6562 -1.6244 19 6 0.3954 -8.3611 -2.1077 20 6 0.4958 -8.3530 -3.5129 21 6 1.5967 -7.6440 -3.8350 22 7 2.1765 -7.2091 -2.6802 23 1 2.9820 -6.6720 -2.6196 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8718 -3.6037 0.8928 28 1 2.8718 -3.6052 -0.8872 29 1 0.8532 -5.0458 -0.8852 30 1 0.8537 -5.0438 0.8947 31 1 2.5220 -5.7741 2.0924 32 1 4.0910 -5.6651 1.2451 33 1 4.4618 -7.8933 1.6199 34 1 2.9091 -7.9932 2.5024 35 1 3.5113 -8.6628 -0.3800 36 1 2.2540 -9.3419 0.7050 37 1 -0.3748 -8.8438 -1.5245 38 1 -0.1842 -8.8276 -4.2050 39 1 1.9545 -7.4499 -4.8353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169975434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:45 Heat of formation + Delta-G solvation = 11.748499 kcal Electronic energy + Delta-G solvation = -17930.049556 eV Core-core repulsion = 15257.567663 eV Total energy + Delta-G solvation = -2672.481894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.00546 -39.75701 -36.20043 -34.29810 -31.82673 -31.68700 -31.47921 -27.97624 -27.78586 -24.81538 -22.67116 -22.47591 -21.33025 -20.92211 -20.83253 -18.58469 -18.41099 -16.94738 -16.52537 -16.18203 -15.62264 -15.19437 -15.01191 -14.48455 -14.31850 -14.13328 -13.94267 -13.73031 -13.41117 -13.10184 -13.01904 -12.86809 -12.57396 -12.34505 -12.30104 -12.19574 -12.03727 -11.56600 -11.44133 -11.37834 -11.12303 -10.58069 -9.66320 -9.51764 -8.84106 -8.22294 -6.34013 1.38395 1.40105 1.45564 1.51307 2.15620 2.39000 2.59958 2.95373 3.10778 3.69578 3.76129 4.02612 4.17049 4.24614 4.29684 4.37245 4.49743 4.60967 4.66725 4.67720 4.78058 4.82815 4.93448 4.97405 4.98955 5.05821 5.13056 5.22017 5.30340 5.42144 5.43912 5.49154 5.68833 5.82099 5.87009 5.99350 6.21144 6.24598 6.37154 6.82706 6.86846 7.35539 8.89857 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.004867 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.262322 B = 5751.215461 C = 6480.336371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.083 4.083 11 C 0.065 3.935 12 N -0.519 5.519 13 C 0.031 3.969 14 C -0.122 4.122 15 C -0.102 4.102 16 C 0.125 3.875 17 H 0.066 0.934 18 C 0.029 3.971 19 C -0.222 4.222 20 C -0.222 4.222 21 C -0.021 4.021 22 N -0.541 5.541 23 H 0.421 0.579 24 H 0.264 0.736 25 H -0.013 1.013 26 H -0.011 1.011 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -18.759 -1.439 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.063 4.063 12 N -0.243 5.243 13 C -0.096 4.096 14 C -0.160 4.160 15 C -0.141 4.141 16 C 0.016 3.984 17 H 0.084 0.916 18 C -0.086 4.086 19 C -0.247 4.247 20 C -0.246 4.246 21 C -0.153 4.153 22 N -0.135 5.135 23 H 0.258 0.742 24 H 0.073 0.927 25 H 0.005 0.995 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.622 -18.453 -1.843 19.692 hybrid contribution -0.470 1.327 0.561 1.516 sum 6.152 -17.126 -1.282 18.242 Atomic orbital electron populations 1.70109 1.07900 1.27825 1.51650 1.26015 0.95769 1.03478 0.94624 0.85422 0.78675 0.78254 0.78553 1.19726 1.20631 1.18617 1.21665 0.93492 0.92276 1.50613 0.92195 1.18962 0.94391 0.93316 0.94468 1.21305 0.97778 0.92412 1.00597 1.22106 0.93627 0.91045 0.99510 1.64619 1.25424 1.01761 1.32507 1.22928 0.99194 0.98171 0.89355 1.22411 1.02516 0.92538 0.98535 1.22484 0.97157 0.97123 0.97297 1.21337 0.97183 0.90099 0.89773 0.91588 1.20097 0.95729 1.03664 0.89125 1.20868 1.00624 1.07806 0.95413 1.21106 1.00721 1.07404 0.95397 1.22305 0.97822 1.03838 0.91318 1.41974 1.24129 1.41982 1.05406 0.74173 0.92736 0.99484 0.99300 0.93062 0.93068 0.92747 0.95508 0.94220 0.90336 0.89486 0.90106 0.91059 0.89093 0.84557 0.83678 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.08 -3.54 5.21 30.59 0.16 -3.38 16 11 C 0.07 2.37 4.70 86.30 0.41 2.78 16 12 N -0.52 -14.86 4.86 -862.26 -4.19 -19.05 16 13 C 0.03 0.78 5.79 86.45 0.50 1.28 16 14 C -0.12 -2.19 6.92 31.48 0.22 -1.97 16 15 C -0.10 -1.95 6.51 31.85 0.21 -1.74 16 16 C 0.12 3.13 2.76 44.57 0.12 3.26 16 17 H 0.07 1.72 8.02 -2.39 -0.02 1.70 16 18 C 0.03 0.76 5.77 41.08 0.24 1.00 16 19 C -0.22 -5.90 10.76 22.14 0.24 -5.66 16 20 C -0.22 -5.49 10.86 22.14 0.24 -5.25 16 21 C -0.02 -0.49 11.94 83.21 0.99 0.51 16 22 N -0.54 -13.64 5.98 -182.77 -1.09 -14.73 16 23 H 0.42 9.95 8.94 -92.71 -0.83 9.13 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.05 2.12 7.52 -2.39 -0.02 2.10 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 2.13 7.82 -2.39 -0.02 2.11 16 30 H 0.03 0.99 7.82 -2.39 -0.02 0.97 16 31 H 0.04 1.07 7.57 -2.39 -0.02 1.05 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 38 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -66.82 318.70 1.38 -65.45 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.18 Total: 17.91 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.17 Total: -38.63 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -5.00 Total: -91.59 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.82 1.38 -65.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169975434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.198 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds