Wall clock time and date at job start Mon Mar 30 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99728 * 2 1 4 4 C 1.46902 * 110.99874 * 123.94675 * 2 1 3 5 5 H 1.08996 * 109.47533 * 296.95013 * 4 2 1 6 6 C 1.50704 * 109.46932 * 176.94633 * 4 2 1 7 7 O 1.21296 * 119.99849 * 332.95717 * 6 4 2 8 8 N 1.34772 * 120.00131 * 152.95758 * 6 4 2 9 9 C 1.37096 * 120.00266 * 180.02562 * 8 6 4 10 10 H 1.08001 * 119.99937 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00016 * 180.02562 * 9 8 6 12 12 N 1.31404 * 120.00007 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99745 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47510 * 59.99979 * 13 11 9 15 15 H 1.48501 * 109.47106 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47263 * 299.99868 * 13 11 9 17 17 C 1.50705 * 109.46958 * 56.95118 * 4 2 1 18 18 C 1.38242 * 119.99723 * 46.45235 * 17 4 2 19 19 C 1.38232 * 119.99528 * 179.81038 * 18 17 4 20 20 C 1.38237 * 120.00040 * 0.40025 * 19 18 17 21 21 C 1.38228 * 120.00178 * 359.85142 * 20 19 18 22 22 C 1.38234 * 120.00036 * 226.72591 * 17 4 2 23 23 H 1.09001 * 109.47607 * 60.00385 * 1 2 3 24 24 H 1.09007 * 109.47517 * 299.99701 * 1 2 3 25 25 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46927 * 61.82728 * 3 2 1 27 27 H 1.08999 * 109.46832 * 181.82813 * 3 2 1 28 28 H 1.09003 * 109.46639 * 301.83100 * 3 2 1 29 29 H 0.97005 * 119.99819 * 0.02562 * 8 6 4 30 30 H 0.97001 * 120.00284 * 180.02562 * 12 11 9 31 31 H 1.07998 * 120.00137 * 0.02562 * 18 17 4 32 32 H 1.08001 * 119.99886 * 180.22690 * 19 18 17 33 33 H 1.08001 * 119.99775 * 179.83753 * 20 19 18 34 34 H 1.07998 * 120.00392 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.99732 * 359.97438 * 22 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.6908 -0.2886 2.0691 6 6 3.5000 -0.8066 1.0627 7 8 4.0564 -0.7153 -0.0113 8 7 4.2274 -0.9445 2.1888 9 6 5.5962 -0.9810 2.1206 10 1 6.0916 -0.8989 1.1645 11 6 6.3461 -1.1237 3.2817 12 7 5.7433 -1.2231 4.4451 13 14 8.2111 -1.1727 3.1888 14 1 8.7105 0.0922 2.5924 15 1 8.7708 -1.3299 4.5553 16 1 8.6348 -2.3189 2.3450 17 6 1.4520 -2.1708 1.0920 18 6 1.4632 -2.8779 -0.0959 19 6 0.9683 -4.1679 -0.1369 20 6 0.4547 -4.7479 1.0080 21 6 0.4388 -4.0390 2.1946 22 6 0.9372 -2.7503 2.2365 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6726 1.8846 0.9060 27 1 3.0845 1.3426 -0.0328 28 1 1.6195 1.9049 -0.8732 29 1 3.7825 -1.0178 3.0477 30 1 6.2668 -1.3223 5.2557 31 1 1.8617 -2.4236 -0.9910 32 1 0.9804 -4.7217 -1.0640 33 1 0.0657 -5.7549 0.9753 34 1 0.0372 -4.4919 3.0889 35 1 0.9248 -2.1964 3.1636 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170627610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:48 Heat of formation + Delta-G solvation = -21.143643 kcal Electronic energy + Delta-G solvation = -18208.960015 eV Core-core repulsion = 15399.218716 eV Total energy + Delta-G solvation = -2809.741299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17764 -39.46556 -37.61945 -35.89460 -33.43488 -32.57000 -31.72705 -28.99274 -28.15688 -26.65239 -23.78481 -23.24783 -22.60624 -20.71642 -19.84792 -18.04899 -17.74988 -16.84301 -16.53632 -16.47663 -15.71741 -15.41896 -15.26742 -15.15572 -14.79425 -14.20854 -13.90083 -13.65890 -13.47165 -13.27659 -13.14653 -12.94463 -12.78427 -12.51777 -12.45374 -12.13616 -11.88792 -11.85060 -11.48715 -10.51232 -10.03104 -9.76452 -9.52061 -9.28606 -8.48041 -5.97255 0.41780 0.55912 1.38124 1.39771 1.50917 2.00600 2.26576 2.75998 2.87054 3.17676 3.44253 3.80427 3.98337 4.19210 4.23987 4.30395 4.33898 4.39457 4.43150 4.63857 4.68850 4.70493 4.78206 4.99322 5.02866 5.09543 5.21720 5.38534 5.58946 5.65347 5.68076 5.86722 6.03159 6.15515 6.16613 6.57145 7.09798 7.51806 8.07436 8.69086 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.007390 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.464038 B = 3787.977850 C = 4523.667181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.533 5.533 3 C 0.028 3.972 4 C 0.126 3.874 5 H 0.059 0.941 6 C 0.453 3.547 7 O -0.610 6.610 8 N -0.568 5.568 9 C -0.334 4.334 10 H 0.079 0.921 11 C -0.011 4.011 12 N -0.918 5.918 13 Si 0.992 3.008 14 H -0.271 1.271 15 H -0.268 1.268 16 H -0.272 1.272 17 C -0.087 4.087 18 C -0.101 4.101 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.124 4.124 23 H 0.086 0.914 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.393 0.607 30 H 0.278 0.722 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 -2.901 -2.522 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.120 4.120 4 C 0.014 3.986 5 H 0.077 0.923 6 C 0.240 3.760 7 O -0.496 6.496 8 N -0.204 5.204 9 C -0.464 4.464 10 H 0.097 0.903 11 C -0.211 4.211 12 N -0.559 5.559 13 Si 0.816 3.184 14 H -0.196 1.196 15 H -0.193 1.193 16 H -0.198 1.198 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.142 4.142 23 H 0.105 0.895 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.226 0.774 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.355 -3.065 -3.468 13.193 hybrid contribution 0.712 0.597 1.202 1.519 sum -11.643 -2.468 -2.266 12.115 Atomic orbital electron populations 1.22456 0.85143 1.02639 1.01612 1.61636 1.08971 1.13921 1.41253 1.22375 1.00341 0.88032 1.01280 1.20260 0.91252 0.93411 0.93656 0.92291 1.20303 0.89080 0.82499 0.84123 1.90478 1.73278 1.56165 1.29645 1.41919 1.06505 1.64052 1.07958 1.19630 0.82300 1.49578 0.94873 0.90270 1.26043 1.04985 0.96087 0.93957 1.69666 1.38342 1.49406 0.98464 0.85004 0.76666 0.78982 0.77785 1.19568 1.19266 1.19773 1.19466 1.00012 0.94256 0.95045 1.21050 0.98355 0.95037 0.97514 1.21425 0.98961 0.94436 0.99980 1.21512 0.98967 1.00845 0.92262 1.21399 0.99678 0.93702 0.99273 1.21249 0.98848 0.96899 0.97226 0.89502 0.94902 0.91250 0.95101 0.93720 0.89104 0.77360 0.91213 0.87336 0.84145 0.83014 0.83323 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.27 127.69 1.18 1.95 16 2 N -0.53 -18.83 4.14 -932.15 -3.86 -22.69 16 3 C 0.03 0.94 9.23 127.69 1.18 2.12 16 4 C 0.13 4.94 2.07 43.43 0.09 5.03 16 5 H 0.06 2.18 7.94 -2.39 -0.02 2.16 16 6 C 0.45 22.85 5.84 87.66 0.51 23.36 16 7 O -0.61 -35.10 15.02 -3.08 -0.05 -35.15 16 8 N -0.57 -30.50 5.29 -306.98 -1.62 -32.12 16 9 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 10 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 11 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 12 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 13 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 C -0.09 -3.08 3.50 -19.86 -0.07 -3.15 16 18 C -0.10 -3.51 8.54 22.27 0.19 -3.32 16 19 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 20 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 21 C -0.12 -3.10 10.05 22.27 0.22 -2.87 16 22 C -0.12 -3.78 9.67 22.27 0.22 -3.57 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.07 1.85 6.37 -2.38 -0.02 1.83 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 1.88 6.24 -2.39 -0.01 1.87 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.39 20.33 7.90 -92.70 -0.73 19.59 16 30 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.11 4.22 7.92 -2.91 -0.02 4.20 16 32 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.13 3.59 7.99 -2.91 -0.02 3.56 16 Total: -1.00 -68.24 298.37 2.39 -65.85 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.35 Total: 33.71 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.25 Total: -5.20 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -5.20 Total: -104.77 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.05 Total: -35.15 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.24 2.39 -65.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170627610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.708 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds