Wall clock time and date at job start Mon Mar 30 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.34222 * 125.03772 * 274.69886 * 11 10 9 13 13 C 1.46496 * 106.99687 * 179.91181 * 12 11 10 14 14 C 1.40663 * 106.05982 * 0.34295 * 13 12 11 15 15 C 1.39091 * 119.43992 * 179.79988 * 14 13 12 16 16 C 1.37758 * 119.94353 * 359.97438 * 15 14 13 17 17 C 1.38800 * 120.68027 * 0.03293 * 16 15 14 18 18 C 1.37755 * 120.37253 * 359.96937 * 17 16 15 19 19 Cl 1.73599 * 120.18947 * 180.02562 * 18 17 16 20 20 N 1.36860 * 125.03636 * 94.99809 * 11 10 9 21 21 H 0.96999 * 125.06145 * 0.02562 * 20 11 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.07997 * 126.50435 * 0.03152 * 12 11 10 28 28 H 1.07998 * 120.03415 * 179.97438 * 15 14 13 29 29 H 1.07997 * 119.66380 * 180.02562 * 16 15 14 30 30 H 1.08000 * 119.81333 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.0287 -5.5892 1.0968 13 6 0.3624 -6.8132 0.6450 14 6 0.4920 -6.8325 -0.7555 15 6 -0.0468 -7.8924 -1.4773 16 6 -0.6999 -8.9111 -0.8190 17 6 -0.8286 -8.8933 0.5629 18 6 -0.3029 -7.8537 1.2981 19 17 -0.4660 -7.8365 3.0263 20 7 1.1829 -5.6968 -1.1148 21 1 1.4168 -5.4510 -2.0236 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.1269 -5.2506 2.1176 28 1 0.0467 -7.9167 -2.5530 29 1 -1.1162 -9.7320 -1.3839 30 1 -1.3438 -9.6991 1.0646 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:15 Heat of formation + Delta-G solvation = 27.072989 kcal Electronic energy + Delta-G solvation = -14864.120548 eV Core-core repulsion = 12263.627487 eV Total energy + Delta-G solvation = -2600.493061 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06423 -37.25946 -36.05063 -33.82829 -31.82551 -31.25148 -29.14500 -28.05233 -25.21966 -22.42710 -21.77198 -21.02717 -19.68067 -17.64219 -16.49502 -16.00861 -15.15217 -14.62293 -14.31468 -14.29839 -14.18787 -13.16229 -12.73593 -12.65384 -12.42446 -12.10910 -11.78549 -11.29514 -11.10889 -11.00062 -10.87133 -10.72572 -10.60767 -10.02921 -9.74120 -9.29209 -9.19028 -8.43045 -8.00963 -7.37917 -6.06914 -4.11195 1.10375 1.64551 2.34314 3.03769 3.27022 3.34030 3.35424 3.38593 3.88244 4.40089 4.86463 4.98364 5.18024 5.29020 5.30864 5.43968 5.70975 5.74561 5.96042 6.14507 6.21053 6.41914 6.44210 6.45896 6.76526 6.81529 7.04014 7.30922 7.57163 7.69108 7.78021 7.91079 8.29388 8.95737 9.53728 11.04001 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.004649 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.133846 B = 6021.963498 C = 6480.515856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.061 4.061 11 C 0.122 3.878 12 C -0.212 4.212 13 C -0.093 4.093 14 C 0.102 3.898 15 C -0.123 4.123 16 C -0.103 4.103 17 C -0.143 4.143 18 C 0.009 3.991 19 Cl -0.076 7.076 20 N -0.589 5.589 21 H 0.416 0.584 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.015 0.985 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -16.654 -1.086 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.099 4.099 11 C 0.014 3.986 12 C -0.236 4.236 13 C -0.099 4.099 14 C -0.007 4.007 15 C -0.144 4.144 16 C -0.122 4.122 17 C -0.163 4.163 18 C -0.018 4.018 19 Cl -0.047 7.047 20 N -0.192 5.192 21 H 0.253 0.747 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.031 -16.463 -1.026 16.495 hybrid contribution 0.373 1.083 -0.315 1.188 sum 0.343 -15.379 -1.342 15.442 Atomic orbital electron populations 1.69981 1.06105 1.26680 1.50309 1.25021 0.94836 0.99343 0.95111 0.86520 0.80080 0.83652 0.77652 1.19667 1.21018 1.20900 1.21230 0.93100 0.90761 1.51306 0.92385 1.19103 0.93573 0.90221 0.97933 1.20666 0.98223 0.88632 1.02357 1.21065 0.98302 0.94269 0.84950 1.21362 1.08156 0.95536 0.98553 1.18941 1.02519 0.96286 0.92184 1.18078 0.99157 0.90081 0.93333 1.20058 1.01727 0.93445 0.99199 1.20589 0.99959 0.98325 0.93376 1.20684 1.03369 0.98360 0.93886 1.20246 1.01592 0.96025 0.83914 1.98342 1.96542 1.98427 1.11430 1.41910 1.49413 1.18613 1.09252 0.74690 0.92912 0.95745 0.96622 0.91967 0.90092 0.83487 0.86007 0.85258 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.72 4.95 -27.88 -0.14 0.58 16 10 C -0.06 -1.17 5.66 -27.89 -0.16 -1.33 16 11 C 0.12 2.19 6.34 -81.77 -0.52 1.67 16 12 C -0.21 -3.82 10.87 -37.67 -0.41 -4.23 16 13 C -0.09 -1.58 6.21 -105.11 -0.65 -2.23 16 14 C 0.10 1.57 7.27 -83.99 -0.61 0.96 16 15 C -0.12 -1.55 10.07 -39.44 -0.40 -1.95 16 16 C -0.10 -1.18 10.01 -39.55 -0.40 -1.57 16 17 C -0.14 -1.80 9.81 -39.55 -0.39 -2.19 16 18 C 0.01 0.14 6.35 -39.21 -0.25 -0.11 16 19 Cl -0.08 -1.08 28.91 -51.86 -1.50 -2.58 16 20 N -0.59 -9.15 6.07 -6.96 -0.04 -9.20 16 21 H 0.42 5.34 8.96 -40.82 -0.37 4.97 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 281.04 15.07 4.24 4.24 Total: -1.00 -30.30 281.04 -9.21 -39.51 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -3.29 Total: 1.11 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -4.33 Total: -23.49 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.69 Total: -34.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.30 -9.21 -39.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.585 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds