Wall clock time and date at job start Mon Mar 30 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.34222 * 125.03772 * 274.69886 * 11 10 9 13 13 C 1.46496 * 106.99687 * 179.91181 * 12 11 10 14 14 C 1.40663 * 106.05982 * 0.34295 * 13 12 11 15 15 C 1.39091 * 119.43992 * 179.79988 * 14 13 12 16 16 C 1.37758 * 119.94353 * 359.97438 * 15 14 13 17 17 C 1.38800 * 120.68027 * 0.03293 * 16 15 14 18 18 C 1.37755 * 120.37253 * 359.96937 * 17 16 15 19 19 Cl 1.73599 * 120.18947 * 180.02562 * 18 17 16 20 20 N 1.36860 * 125.03636 * 94.99809 * 11 10 9 21 21 H 0.96999 * 125.06145 * 0.02562 * 20 11 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.07997 * 126.50435 * 0.03152 * 12 11 10 28 28 H 1.07998 * 120.03415 * 179.97438 * 15 14 13 29 29 H 1.07997 * 119.66380 * 180.02562 * 16 15 14 30 30 H 1.08000 * 119.81333 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.0287 -5.5892 1.0968 13 6 0.3624 -6.8132 0.6450 14 6 0.4920 -6.8325 -0.7555 15 6 -0.0468 -7.8924 -1.4773 16 6 -0.6999 -8.9111 -0.8190 17 6 -0.8286 -8.8933 0.5629 18 6 -0.3029 -7.8537 1.2981 19 17 -0.4660 -7.8365 3.0263 20 7 1.1829 -5.6968 -1.1148 21 1 1.4168 -5.4510 -2.0236 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 1.1269 -5.2506 2.1176 28 1 0.0467 -7.9167 -2.5530 29 1 -1.1162 -9.7320 -1.3839 30 1 -1.3438 -9.6991 1.0646 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:15 Heat of formation + Delta-G solvation = 10.611650 kcal Electronic energy + Delta-G solvation = -14864.834365 eV Core-core repulsion = 12263.627487 eV Total energy + Delta-G solvation = -2601.206878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.062 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.25088 -38.38057 -37.15861 -35.72759 -33.50218 -32.56365 -30.29165 -29.51837 -26.97208 -23.90075 -23.06409 -22.35558 -21.05946 -18.87142 -18.45144 -17.18607 -16.55330 -16.28585 -15.60588 -15.40848 -15.36545 -14.81096 -14.40793 -14.04168 -13.78063 -13.58805 -13.03922 -12.94608 -12.77417 -12.45207 -12.15601 -12.05181 -11.91688 -11.76580 -11.56902 -11.24810 -10.58850 -10.47743 -9.15924 -8.60028 -8.20751 -6.33427 0.00689 0.58360 1.25564 1.41085 1.41937 1.54809 1.71386 2.17027 2.41344 2.80657 3.12883 3.71166 3.96395 4.16526 4.20801 4.35682 4.42555 4.52953 4.74721 4.79243 4.96460 4.99377 5.04971 5.38181 5.45105 5.47061 5.54305 5.69966 5.80175 5.85278 6.11714 6.18040 6.63761 6.84380 7.36789 8.90825 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.004649 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.133846 B = 6021.963498 C = 6480.515856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.037 3.963 10 C -0.044 4.044 11 C 0.104 3.896 12 C -0.228 4.228 13 C -0.126 4.126 14 C 0.090 3.910 15 C -0.124 4.124 16 C -0.089 4.089 17 C -0.137 4.137 18 C -0.012 4.012 19 Cl -0.079 7.079 20 N -0.584 5.584 21 H 0.427 0.573 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.138 0.862 28 H 0.153 0.847 29 H 0.173 0.827 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 -18.120 -2.293 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.001 4.001 10 C -0.082 4.082 11 C -0.004 4.004 12 C -0.252 4.252 13 C -0.131 4.131 14 C -0.018 4.018 15 C -0.144 4.144 16 C -0.108 4.108 17 C -0.157 4.157 18 C -0.039 4.039 19 Cl -0.050 7.050 20 N -0.188 5.188 21 H 0.266 0.734 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.190 0.810 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.389 -17.947 -2.248 18.091 hybrid contribution 0.159 1.387 0.061 1.397 sum 0.547 -16.560 -2.188 16.713 Atomic orbital electron populations 1.70124 1.07991 1.27756 1.51606 1.25992 0.95674 1.03481 0.94640 0.85374 0.79248 0.78638 0.77633 1.18153 1.20499 1.20657 1.21705 0.93828 0.91825 1.50605 0.91343 1.18913 0.93934 0.92227 0.94991 1.20328 0.97026 0.87514 1.03345 1.20711 0.99510 0.94211 0.86014 1.21461 1.08678 0.96720 0.98362 1.19127 1.04016 0.96637 0.93336 1.18481 0.99453 0.90680 0.93213 1.20520 1.00695 0.92374 1.00819 1.21145 0.98041 0.98638 0.93005 1.21128 1.02052 0.97861 0.94652 1.20508 1.02550 0.96669 0.84161 1.98334 1.96575 1.98460 1.11657 1.41803 1.49327 1.18540 1.09144 0.73424 0.92803 0.99122 0.99193 0.90368 0.89657 0.84382 0.82914 0.80984 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.04 1.91 4.95 29.85 0.15 2.05 16 10 C -0.04 -1.74 5.66 29.85 0.17 -1.58 16 11 C 0.10 3.83 6.34 40.86 0.26 4.09 16 12 C -0.23 -8.52 10.87 23.51 0.26 -8.27 16 13 C -0.13 -4.24 6.21 -20.18 -0.13 -4.36 16 14 C 0.09 2.67 7.27 39.02 0.28 2.96 16 15 C -0.12 -2.70 10.07 22.36 0.23 -2.48 16 16 C -0.09 -1.66 10.01 22.29 0.22 -1.43 16 17 C -0.14 -3.05 9.81 22.29 0.22 -2.83 16 18 C -0.01 -0.35 6.35 22.51 0.14 -0.20 16 19 Cl -0.08 -2.23 28.91 -2.72 -0.08 -2.31 16 20 N -0.58 -18.00 6.07 -175.92 -1.07 -19.07 16 21 H 0.43 10.67 8.96 -92.71 -0.83 9.84 16 22 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 23 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 28 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -67.01 281.04 3.98 -63.02 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.33 Total: 10.73 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 2.49 Total: -41.32 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -0.78 Total: -75.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.08 Total: -2.31 kcal Total: -67.01 3.98 -63.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.632 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds