Wall clock time and date at job start Mon Mar 30 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 H 1.09002 * 109.47727 * 305.88226 * 3 2 1 5 5 C 1.50703 * 109.46815 * 185.88047 * 3 2 1 6 6 H 1.07994 * 120.00193 * 245.55630 * 5 3 2 7 7 C 1.37881 * 119.99749 * 65.28908 * 5 3 2 8 8 N 1.31512 * 119.99858 * 192.92256 * 7 5 3 9 9 Si 1.86798 * 120.00201 * 12.91574 * 7 5 3 10 10 H 1.48497 * 109.46984 * 84.96956 * 9 7 5 11 11 H 1.48493 * 109.47312 * 204.97201 * 9 7 5 12 12 H 1.48503 * 109.47050 * 324.97083 * 9 7 5 13 13 N 1.46895 * 109.47201 * 65.88638 * 3 2 1 14 14 C 1.46904 * 111.00193 * 256.39163 * 13 3 2 15 15 H 1.08997 * 109.46591 * 36.10652 * 14 13 3 16 16 C 1.52994 * 109.46976 * 276.11026 * 14 13 3 17 17 C 1.50701 * 109.47462 * 156.10718 * 14 13 3 18 18 C 1.38226 * 119.61610 * 205.00546 * 17 14 13 19 19 C 1.38631 * 119.15614 * 179.97438 * 18 17 14 20 20 C 1.38670 * 118.42188 * 359.97438 * 19 18 17 21 21 C 1.38180 * 119.16551 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.62048 * 179.97438 * 21 20 19 23 23 N 1.31853 * 119.61589 * 24.72342 * 17 14 13 24 24 H 1.09003 * 109.47465 * 179.85505 * 1 2 3 25 25 H 1.08998 * 109.47285 * 299.86274 * 1 2 3 26 26 H 1.09001 * 109.47137 * 59.85784 * 1 2 3 27 27 H 1.09002 * 109.46621 * 240.00214 * 2 1 3 28 28 H 1.08993 * 109.46986 * 120.00341 * 2 1 3 29 29 H 0.97003 * 120.00337 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00480 * 20.34440 * 13 3 2 31 31 H 1.08997 * 109.47155 * 299.99281 * 16 14 13 32 32 H 1.08999 * 109.47746 * 59.99778 * 16 14 13 33 33 H 1.09002 * 109.47085 * 179.97438 * 16 14 13 34 34 H 1.08001 * 120.42435 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.78903 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.41583 * 179.97438 * 20 19 18 37 37 H 1.09007 * 109.46905 * 90.00003 * 22 21 20 38 38 H 1.08994 * 109.47400 * 210.00539 * 22 21 20 39 39 H 1.09000 * 109.47184 * 330.00613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9859 -0.8326 5 6 3.5399 1.4449 -0.1456 6 1 4.1603 1.8035 0.6624 7 6 4.1204 0.9842 -1.3083 8 7 5.4132 0.7458 -1.3481 9 14 3.0708 0.6984 -2.8268 10 1 2.9228 1.9735 -3.5733 11 1 3.7240 -0.3119 -3.6971 12 1 1.7309 0.2064 -2.4169 13 7 1.6697 2.0927 1.2641 14 6 0.5328 3.0035 1.0744 15 1 -0.1540 2.5795 0.3419 16 6 1.0414 4.3565 0.5732 17 6 -0.1849 3.1912 2.3862 18 6 -1.5202 3.5483 2.3893 19 6 -2.1712 3.7179 3.6014 20 6 -1.4517 3.5205 4.7703 21 6 -0.1193 3.1634 4.6887 22 6 0.6725 2.9468 5.9525 23 7 0.4667 3.0073 3.5176 24 1 -0.3634 -1.0277 -0.0026 25 1 -0.3634 0.5117 0.8912 26 1 -0.3633 0.5160 -0.8887 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.8216 0.4213 -2.1660 30 1 1.4694 1.4082 1.9778 31 1 1.7282 4.7806 1.3057 32 1 1.5605 4.2209 -0.3757 33 1 0.1978 5.0322 0.4320 34 1 -2.0497 3.6934 1.4592 35 1 -3.2142 3.9964 3.6346 36 1 -1.9267 3.6444 5.7323 37 1 0.5971 1.9020 6.2540 38 1 1.7177 3.1991 5.7741 39 1 0.2752 3.5828 6.7436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:43 Heat of formation + Delta-G solvation = 32.248818 kcal Electronic energy + Delta-G solvation = -18394.206313 eV Core-core repulsion = 15722.613379 eV Total energy + Delta-G solvation = -2671.592933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27742 -37.07988 -33.93826 -32.74070 -31.91399 -31.02871 -28.95203 -27.29410 -26.77902 -23.88045 -22.50877 -22.02712 -20.35239 -19.67914 -16.89667 -16.29755 -16.19418 -15.26142 -14.97614 -14.54334 -14.11306 -13.83580 -13.44181 -13.17948 -12.91113 -12.63533 -12.52395 -12.23034 -12.04592 -11.82757 -11.74649 -11.47725 -11.28375 -10.82481 -10.81751 -10.64704 -10.24077 -9.86490 -9.72406 -9.38134 -9.19062 -9.10991 -8.68731 -8.32565 -7.19850 -5.96525 -3.88619 1.18198 1.38903 3.32374 3.40479 3.42821 3.87129 4.30761 4.49991 4.71046 4.75410 5.06779 5.10375 5.29366 5.35388 5.48676 5.59279 5.64264 5.66697 5.79574 5.81590 5.87756 5.90647 6.05203 6.06341 6.15194 6.19653 6.33223 6.44437 6.51864 6.61515 6.76087 6.82742 6.87960 6.94786 7.26514 7.86016 8.02703 8.26841 8.52248 8.84175 9.22401 9.69673 11.17260 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.006041 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.152696 B = 4633.900876 C = 4864.104632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.155 4.155 3 C 0.191 3.809 4 H 0.022 0.978 5 C -0.490 4.490 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.252 1.252 13 N -0.652 5.652 14 C 0.131 3.869 15 H 0.051 0.949 16 C -0.131 4.131 17 C 0.145 3.855 18 C -0.181 4.181 19 C -0.074 4.074 20 C -0.187 4.187 21 C 0.128 3.872 22 C -0.103 4.103 23 N -0.456 5.456 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.261 0.739 30 H 0.335 0.665 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.033 4.701 9.497 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.082 3.918 4 H 0.039 0.961 5 C -0.529 4.529 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.683 3.317 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.177 1.177 13 N -0.283 5.283 14 C 0.020 3.980 15 H 0.068 0.932 16 C -0.189 4.189 17 C 0.006 3.994 18 C -0.202 4.202 19 C -0.100 4.100 20 C -0.207 4.207 21 C -0.010 4.010 22 C -0.161 4.161 23 N -0.165 5.165 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.519 4.889 9.298 17.921 hybrid contribution -2.217 -0.586 -1.078 2.534 sum -16.737 4.304 8.220 19.137 Atomic orbital electron populations 1.21928 0.98740 1.00136 1.00312 1.22698 0.92600 1.01910 1.02224 1.19635 0.96859 0.88100 0.87187 0.96071 1.21018 0.89137 1.40666 1.02063 0.90075 1.24912 0.94670 0.95127 0.98485 1.69949 1.10670 1.45700 1.27473 0.87403 0.82049 0.78136 0.84092 1.20646 1.21689 1.17693 1.60563 1.34800 1.23203 1.09728 1.20552 0.91778 0.96306 0.89384 0.93176 1.21747 1.00175 0.94577 1.02421 1.21598 0.90528 0.92811 0.94435 1.21921 0.95894 1.03404 0.98954 1.21473 0.99851 0.96386 0.92305 1.21888 0.95583 1.04131 0.99136 1.21383 0.91543 0.94059 0.94042 1.20704 1.00751 1.02403 0.92223 1.67430 1.38457 1.13439 0.97201 0.94006 0.93904 0.93678 0.91608 0.92430 0.92920 0.84560 0.91831 0.91278 0.93845 0.85160 0.85250 0.85350 0.90528 0.90091 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.88 37.16 0.33 -2.41 16 2 C -0.16 -3.36 4.53 -26.73 -0.12 -3.48 16 3 C 0.19 4.49 1.50 -68.87 -0.10 4.38 16 4 H 0.02 0.51 5.88 -51.93 -0.31 0.21 16 5 C -0.49 -13.95 9.29 -34.44 -0.32 -14.27 16 6 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 7 C 0.07 2.00 5.36 -17.82 -0.10 1.90 16 8 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 9 Si 0.86 21.16 25.85 -169.99 -4.39 16.76 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.25 -5.79 5.30 56.52 0.30 -5.49 16 13 N -0.65 -13.81 5.60 -102.17 -0.57 -14.39 16 14 C 0.13 2.33 1.92 -68.86 -0.13 2.20 16 15 H 0.05 0.87 6.43 -51.93 -0.33 0.53 16 16 C -0.13 -2.26 9.37 37.15 0.35 -1.92 16 17 C 0.14 2.33 5.71 -82.59 -0.47 1.86 16 18 C -0.18 -2.37 9.77 -39.44 -0.39 -2.75 16 19 C -0.07 -0.82 10.18 -39.28 -0.40 -1.22 16 20 C -0.19 -2.12 9.74 -39.44 -0.38 -2.50 16 21 C 0.13 1.74 6.78 -82.59 -0.56 1.18 16 22 C -0.10 -1.10 10.17 36.00 0.37 -0.74 16 23 N -0.46 -7.62 9.21 -5.74 -0.05 -7.68 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.72 6.62 -51.93 -0.34 0.38 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.51 4.67 -51.93 -0.24 1.27 16 28 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.34 7.05 7.05 -39.29 -0.28 6.77 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.29 7.69 -51.93 -0.40 0.90 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -31.47 311.15 -7.69 -39.16 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.20 Total: 6.30 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.93 Total: -17.78 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.15 Total: -49.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.39 Total: 16.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.47 -7.69 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.404 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds