Wall clock time and date at job start Mon Mar 30 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46953 * 2 1 4 4 H 1.09002 * 109.47727 * 305.88226 * 3 2 1 5 5 C 1.50703 * 109.46815 * 185.88047 * 3 2 1 6 6 H 1.07994 * 120.00193 * 245.55630 * 5 3 2 7 7 C 1.37881 * 119.99749 * 65.28908 * 5 3 2 8 8 N 1.31512 * 119.99858 * 192.92256 * 7 5 3 9 9 Si 1.86798 * 120.00201 * 12.91574 * 7 5 3 10 10 H 1.48497 * 109.46984 * 84.96956 * 9 7 5 11 11 H 1.48493 * 109.47312 * 204.97201 * 9 7 5 12 12 H 1.48503 * 109.47050 * 324.97083 * 9 7 5 13 13 N 1.46895 * 109.47201 * 65.88638 * 3 2 1 14 14 C 1.46904 * 111.00193 * 256.39163 * 13 3 2 15 15 H 1.08997 * 109.46591 * 36.10652 * 14 13 3 16 16 C 1.52994 * 109.46976 * 276.11026 * 14 13 3 17 17 C 1.50701 * 109.47462 * 156.10718 * 14 13 3 18 18 C 1.38226 * 119.61610 * 205.00546 * 17 14 13 19 19 C 1.38631 * 119.15614 * 179.97438 * 18 17 14 20 20 C 1.38670 * 118.42188 * 359.97438 * 19 18 17 21 21 C 1.38180 * 119.16551 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.62048 * 179.97438 * 21 20 19 23 23 N 1.31853 * 119.61589 * 24.72342 * 17 14 13 24 24 H 1.09003 * 109.47465 * 179.85505 * 1 2 3 25 25 H 1.08998 * 109.47285 * 299.86274 * 1 2 3 26 26 H 1.09001 * 109.47137 * 59.85784 * 1 2 3 27 27 H 1.09002 * 109.46621 * 240.00214 * 2 1 3 28 28 H 1.08993 * 109.46986 * 120.00341 * 2 1 3 29 29 H 0.97003 * 120.00337 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00480 * 20.34440 * 13 3 2 31 31 H 1.08997 * 109.47155 * 299.99281 * 16 14 13 32 32 H 1.08999 * 109.47746 * 59.99778 * 16 14 13 33 33 H 1.09002 * 109.47085 * 179.97438 * 16 14 13 34 34 H 1.08001 * 120.42435 * 359.97438 * 18 17 14 35 35 H 1.08005 * 120.78903 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.41583 * 179.97438 * 20 19 18 37 37 H 1.09007 * 109.46905 * 90.00003 * 22 21 20 38 38 H 1.08994 * 109.47400 * 210.00539 * 22 21 20 39 39 H 1.09000 * 109.47184 * 330.00613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9859 -0.8326 5 6 3.5399 1.4449 -0.1456 6 1 4.1603 1.8035 0.6624 7 6 4.1204 0.9842 -1.3083 8 7 5.4132 0.7458 -1.3481 9 14 3.0708 0.6984 -2.8268 10 1 2.9228 1.9735 -3.5733 11 1 3.7240 -0.3119 -3.6971 12 1 1.7309 0.2064 -2.4169 13 7 1.6697 2.0927 1.2641 14 6 0.5328 3.0035 1.0744 15 1 -0.1540 2.5795 0.3419 16 6 1.0414 4.3565 0.5732 17 6 -0.1849 3.1912 2.3862 18 6 -1.5202 3.5483 2.3893 19 6 -2.1712 3.7179 3.6014 20 6 -1.4517 3.5205 4.7703 21 6 -0.1193 3.1634 4.6887 22 6 0.6725 2.9468 5.9525 23 7 0.4667 3.0073 3.5176 24 1 -0.3634 -1.0277 -0.0026 25 1 -0.3634 0.5117 0.8912 26 1 -0.3633 0.5160 -0.8887 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.8216 0.4213 -2.1660 30 1 1.4694 1.4082 1.9778 31 1 1.7282 4.7806 1.3057 32 1 1.5605 4.2209 -0.3757 33 1 0.1978 5.0322 0.4320 34 1 -2.0497 3.6934 1.4592 35 1 -3.2142 3.9964 3.6346 36 1 -1.9267 3.6444 5.7323 37 1 0.5971 1.9020 6.2540 38 1 1.7177 3.1991 5.7741 39 1 0.2752 3.5828 6.7436 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:43 Heat of formation + Delta-G solvation = 10.654371 kcal Electronic energy + Delta-G solvation = -18395.142718 eV Core-core repulsion = 15722.613379 eV Total energy + Delta-G solvation = -2672.529339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30484 -38.67129 -35.42664 -34.02641 -33.61571 -32.24641 -30.45639 -28.69368 -28.23800 -25.16501 -24.17432 -23.03140 -21.70090 -21.40738 -18.86771 -17.49508 -17.29902 -16.74620 -16.39906 -15.82564 -15.64230 -15.19225 -14.92042 -14.55156 -14.44112 -13.83567 -13.76864 -13.59315 -13.30380 -13.08981 -12.98751 -12.89416 -12.63578 -12.58331 -12.39506 -12.33236 -11.88372 -11.68571 -11.27489 -11.19573 -10.68672 -10.54280 -10.15611 -9.67135 -8.86310 -8.22257 -6.19899 0.21137 0.47493 1.35939 1.38058 1.47094 2.39265 2.88114 3.10202 3.26404 3.46403 3.85345 4.01300 4.25110 4.27532 4.31961 4.36652 4.37903 4.44765 4.51911 4.66244 4.73098 4.80039 4.81905 4.85185 4.87766 5.00304 5.06483 5.16906 5.20393 5.25566 5.30517 5.33557 5.41035 5.52051 5.77121 5.89394 6.14835 6.76577 6.85976 6.87927 7.27579 7.43535 8.95703 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.006041 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.152696 B = 4633.900876 C = 4864.104632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.153 4.153 3 C 0.200 3.800 4 H 0.025 0.975 5 C -0.498 4.498 6 H 0.025 0.975 7 C 0.009 3.991 8 N -0.952 5.952 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.219 1.219 13 N -0.668 5.668 14 C 0.132 3.868 15 H 0.063 0.937 16 C -0.126 4.126 17 C 0.117 3.883 18 C -0.181 4.181 19 C -0.069 4.069 20 C -0.177 4.177 21 C 0.104 3.896 22 C -0.101 4.101 23 N -0.501 5.501 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.489 4.965 9.670 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.192 4.192 3 C 0.090 3.910 4 H 0.043 0.957 5 C -0.537 4.537 6 H 0.043 0.957 7 C -0.187 4.187 8 N -0.593 5.593 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.142 1.142 13 N -0.299 5.299 14 C 0.021 3.979 15 H 0.080 0.920 16 C -0.185 4.185 17 C -0.020 4.020 18 C -0.201 4.201 19 C -0.094 4.094 20 C -0.197 4.197 21 C -0.033 4.033 22 C -0.158 4.158 23 N -0.211 5.211 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.181 0.819 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.003 5.164 9.492 21.860 hybrid contribution -0.780 -0.595 -0.947 1.363 sum -19.783 4.569 8.545 22.029 Atomic orbital electron populations 1.21810 0.95066 1.01950 1.01220 1.22537 0.95816 0.99747 1.01099 1.19384 0.93377 0.89793 0.88429 0.95733 1.21292 0.91846 1.39947 1.00613 0.95681 1.25808 0.95953 0.94861 1.02067 1.70122 1.13111 1.47559 1.28523 0.86263 0.81540 0.78195 0.79020 1.20074 1.21725 1.14196 1.60354 1.37608 1.23383 1.08582 1.20549 0.90815 0.95091 0.91431 0.91981 1.21706 1.00840 0.95455 1.00453 1.21353 0.91840 0.95554 0.93300 1.22132 0.94544 1.02496 1.00906 1.21943 1.01501 0.94766 0.91224 1.22289 0.94468 1.01854 1.01039 1.21849 0.93172 0.94643 0.93681 1.20759 0.99411 1.03475 0.92190 1.67295 1.40287 1.15018 0.98501 0.91754 0.93109 0.92638 0.92853 0.93547 0.92883 0.84737 0.94064 0.93427 0.90361 0.83064 0.81332 0.81856 0.89900 0.92248 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.88 71.98 0.64 -4.02 16 2 C -0.15 -6.47 4.53 30.59 0.14 -6.33 16 3 C 0.20 9.47 1.50 44.17 0.07 9.54 16 4 H 0.02 1.16 5.88 -2.39 -0.01 1.15 16 5 C -0.50 -29.77 9.29 25.60 0.24 -29.53 16 6 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 7 C 0.01 0.56 5.36 84.66 0.45 1.01 16 8 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 9 Si 0.93 44.05 25.85 68.60 1.77 45.82 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.22 -9.19 5.30 99.48 0.53 -8.67 16 13 N -0.67 -29.02 5.60 -477.17 -2.67 -31.69 16 14 C 0.13 4.60 1.92 44.17 0.09 4.68 16 15 H 0.06 2.00 6.43 -2.39 -0.02 1.99 16 16 C -0.13 -4.36 9.37 71.98 0.67 -3.69 16 17 C 0.12 3.62 5.71 42.55 0.24 3.87 16 18 C -0.18 -4.10 9.77 22.36 0.22 -3.88 16 19 C -0.07 -1.22 10.18 22.47 0.23 -0.99 16 20 C -0.18 -3.33 9.74 22.36 0.22 -3.11 16 21 C 0.10 2.68 6.78 42.54 0.29 2.96 16 22 C -0.10 -2.05 10.17 71.24 0.72 -1.33 16 23 N -0.50 -16.65 9.21 -172.08 -1.59 -18.24 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.57 6.62 -2.39 -0.02 1.56 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 2.37 4.67 -2.39 -0.01 2.36 16 28 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.33 14.45 7.05 -89.70 -0.63 13.81 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.80 7.69 -2.39 -0.02 1.78 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -73.38 311.15 2.25 -71.13 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.22 Total: 25.15 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.22 Total: -30.82 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.96 Total: -111.28 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.77 Total: 45.82 kcal Total: -73.38 2.25 -71.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.785 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds