Wall clock time and date at job start Mon Mar 30 2020 18:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47118 * 57.08212 * 3 2 1 5 5 C 1.50699 * 109.47061 * 177.08231 * 3 2 1 6 6 H 1.08005 * 119.99517 * 120.00330 * 5 3 2 7 7 C 1.37868 * 120.00430 * 300.00022 * 5 3 2 8 8 N 1.31512 * 119.99867 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00394 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47060 * 59.99823 * 9 7 5 11 11 H 1.48499 * 109.47248 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47289 * 299.99974 * 9 7 5 13 13 N 1.46902 * 109.47032 * 297.08458 * 3 2 1 14 14 C 1.46897 * 110.99792 * 107.29402 * 13 3 2 15 15 H 1.08993 * 109.47394 * 319.44230 * 14 13 3 16 16 C 1.53004 * 109.46707 * 199.44392 * 14 13 3 17 17 C 1.52999 * 109.47207 * 63.40715 * 16 14 13 18 18 C 1.50701 * 109.47158 * 79.44926 * 14 13 3 19 19 C 1.38671 * 120.41823 * 219.99629 * 18 14 13 20 20 C 1.38626 * 118.42263 * 179.97438 * 19 18 14 21 21 C 1.38230 * 119.16042 * 0.02562 * 20 19 18 22 22 N 1.31856 * 120.76169 * 359.97438 * 21 20 19 23 23 C 1.31883 * 121.72671 * 359.70716 * 22 21 20 24 24 H 1.08997 * 109.47105 * 184.88238 * 1 2 3 25 25 H 1.08999 * 109.47123 * 304.87627 * 1 2 3 26 26 H 1.08995 * 109.46804 * 64.88078 * 1 2 3 27 27 H 1.08995 * 109.47579 * 239.99706 * 2 1 3 28 28 H 1.09005 * 109.47079 * 119.99416 * 2 1 3 29 29 H 0.97002 * 120.00408 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99984 * 231.24587 * 13 3 2 31 31 H 1.09006 * 109.47209 * 183.40327 * 16 14 13 32 32 H 1.08993 * 109.47449 * 303.40191 * 16 14 13 33 33 H 1.08994 * 109.46977 * 56.93054 * 17 16 14 34 34 H 1.09001 * 109.47029 * 176.93494 * 17 16 14 35 35 H 1.09001 * 109.46624 * 296.93181 * 17 16 14 36 36 H 1.08001 * 120.78737 * 359.97438 * 19 18 14 37 37 H 1.07998 * 120.42290 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.61589 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.61756 * 180.30723 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6346 1.9712 0.8627 5 6 3.5453 1.4431 0.0723 6 1 4.1237 1.8973 -0.7187 7 6 4.1840 0.8641 1.1482 8 7 3.4797 0.3116 2.1116 9 14 6.0499 0.8642 1.2374 10 1 6.5454 2.2642 1.2370 11 1 6.4859 0.1857 2.4843 12 1 6.6018 0.1435 0.0622 13 7 1.6087 2.1144 -1.2331 14 6 0.5414 3.0855 -0.9578 15 1 -0.1532 2.6655 -0.2305 16 6 -0.2070 3.4018 -2.2542 17 6 -0.8900 2.1340 -2.7712 18 6 1.1442 4.3509 -0.4043 19 6 0.5199 5.0322 0.6296 20 6 1.1109 6.1915 1.1075 21 6 2.2942 6.6271 0.5412 22 7 2.8599 5.9535 -0.4411 23 6 2.3293 4.8437 -0.9165 24 1 -0.3633 -1.0239 0.0875 25 1 -0.3633 0.5876 0.8431 26 1 -0.3633 0.4362 -0.9304 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9291 -0.0955 2.8688 30 1 2.3888 2.5560 -1.6961 31 1 -0.9592 4.1670 -2.0621 32 1 0.4982 3.7651 -3.0016 33 1 -1.5548 1.7402 -2.0025 34 1 -1.4676 2.3710 -3.6647 35 1 -0.1338 1.3876 -3.0148 36 1 -0.4048 4.6682 1.0525 37 1 0.6526 6.7474 1.9121 38 1 2.7608 7.5297 0.9075 39 1 2.8242 4.3164 -1.7186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:50 Heat of formation + Delta-G solvation = 19.152124 kcal Electronic energy + Delta-G solvation = -18785.345388 eV Core-core repulsion = 16113.184540 eV Total energy + Delta-G solvation = -2672.160849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97526 -37.03215 -34.11227 -31.99041 -31.60131 -31.10110 -29.69586 -26.67734 -24.88305 -23.31200 -22.65134 -22.32424 -20.06080 -19.37174 -17.10989 -16.41260 -15.92028 -15.10953 -14.82693 -14.29059 -13.88362 -13.85731 -13.34588 -13.27591 -12.73282 -12.61130 -12.18870 -11.98190 -11.86690 -11.33194 -11.19376 -11.07174 -10.92947 -10.78696 -10.71252 -10.47509 -10.09455 -9.67466 -9.50647 -9.33264 -9.07972 -8.86205 -8.55102 -8.41272 -7.33687 -6.02399 -4.10036 1.49296 1.65420 3.31259 3.35136 3.38826 4.18586 4.40477 4.74192 5.04553 5.13891 5.18453 5.28702 5.32535 5.45577 5.55188 5.62539 5.84912 5.86954 6.07272 6.16952 6.25107 6.27956 6.36456 6.41800 6.46943 6.50234 6.63717 6.69745 6.79517 7.04491 7.07892 7.15747 7.46462 7.55694 7.76817 7.96157 8.21079 8.33472 8.35401 8.63088 9.00471 9.56092 11.02032 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015559 B = 0.009755 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.129069 B = 2869.697955 C = 4023.568065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.012 0.988 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.129 3.871 15 H 0.083 0.917 16 C -0.105 4.105 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.074 4.074 20 C -0.176 4.176 21 C 0.083 3.917 22 N -0.484 5.484 23 C 0.115 3.885 24 H 0.026 0.974 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 7.527 -4.203 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.029 0.971 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.305 5.305 14 C 0.017 3.983 15 H 0.101 0.899 16 C -0.143 4.143 17 C -0.197 4.197 18 C -0.146 4.146 19 C -0.101 4.101 20 C -0.196 4.196 21 C -0.074 4.074 22 N -0.192 5.192 23 C -0.043 4.043 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.276 7.205 -4.567 11.213 hybrid contribution 0.813 0.379 1.209 1.505 sum -6.464 7.585 -3.358 10.516 Atomic orbital electron populations 1.21885 0.99653 0.98639 1.00208 1.21517 0.91488 0.99477 1.01774 1.19108 0.93639 0.90907 0.85131 0.97072 1.21423 0.91436 1.37591 1.06088 0.92602 1.24873 0.98099 0.95054 0.95544 1.69871 1.35051 1.37798 1.09764 0.86687 0.85934 0.78240 0.77357 1.20343 1.21321 1.20150 1.60988 1.12970 1.28798 1.27698 1.20729 0.94889 0.86908 0.95756 0.89929 1.21492 0.98528 0.97669 0.96644 1.21673 1.00354 0.98294 0.99421 1.21924 0.96876 0.98893 0.96902 1.21450 0.99395 0.94144 0.95071 1.22030 0.97915 0.98037 1.01587 1.22615 0.92892 0.98899 0.93032 1.67628 1.32715 1.07516 1.11351 1.22464 0.92146 0.91561 0.98101 0.95524 0.94891 0.92910 0.94527 0.89509 0.92914 0.84981 0.92932 0.92313 0.93232 0.94151 0.90922 0.85444 0.85464 0.83498 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.80 37.16 0.33 -2.56 16 2 C -0.10 -2.44 5.44 -26.73 -0.15 -2.59 16 3 C 0.22 5.23 1.93 -68.86 -0.13 5.10 16 4 H 0.01 0.31 7.32 -51.93 -0.38 -0.07 16 5 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 6 H 0.06 1.47 7.36 -52.48 -0.39 1.09 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -25.06 11.30 55.43 0.63 -24.43 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.15 5.08 -102.17 -0.52 -13.67 16 14 C 0.13 2.16 1.55 -68.86 -0.11 2.06 16 15 H 0.08 1.46 6.75 -51.93 -0.35 1.11 16 16 C -0.11 -1.47 5.60 -26.73 -0.15 -1.62 16 17 C -0.14 -1.88 8.74 37.16 0.32 -1.56 16 18 C -0.14 -2.44 4.53 -104.48 -0.47 -2.91 16 19 C -0.07 -1.16 9.82 -39.28 -0.39 -1.54 16 20 C -0.18 -2.53 10.11 -39.44 -0.40 -2.92 16 21 C 0.08 1.28 11.18 -17.54 -0.20 1.08 16 22 N -0.48 -8.77 10.36 -13.25 -0.14 -8.90 16 23 C 0.11 2.07 10.36 -17.55 -0.18 1.88 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.64 8.05 -51.93 -0.42 0.23 16 26 H 0.05 0.95 5.32 -51.93 -0.28 0.68 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 2.30 6.00 -51.93 -0.31 1.99 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.33 6.51 5.63 -39.29 -0.22 6.29 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.66 7.31 -51.93 -0.38 0.28 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.15 2.61 6.50 -52.49 -0.34 2.26 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -28.63 310.68 -8.26 -36.89 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.98 Total: 7.16 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.91 Total: -18.16 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.03 Total: -47.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.63 -8.26 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.037 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds